Wall clock time and date at job start Mon Mar 30 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99592 * 2 1 4 4 C 1.50701 * 109.47260 * 90.00114 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.34771 * 119.99877 * 179.97438 * 2 1 3 13 13 O 1.21591 * 119.99865 * 180.02562 * 12 2 1 14 14 N 1.34782 * 120.00294 * 0.02562 * 12 2 1 15 15 C 1.46502 * 119.99917 * 179.97438 * 14 12 2 16 16 H 1.08994 * 110.34291 * 327.28107 * 15 14 12 17 17 C 1.51096 * 110.38898 * 89.69514 * 15 14 12 18 18 C 1.30522 * 111.10375 * 135.24565 * 17 15 14 19 19 C 1.51100 * 111.10543 * 0.02562 * 18 17 15 20 20 H 1.09000 * 110.38581 * 224.75095 * 19 18 17 21 21 C 1.50697 * 110.48811 * 102.42287 * 19 18 17 22 22 O 1.20826 * 120.00187 * 244.64315 * 21 19 18 23 23 O 1.34232 * 119.99682 * 64.63791 * 21 19 18 24 24 C 1.54634 * 110.38352 * 205.00093 * 15 14 12 25 25 H 1.08998 * 109.46961 * 90.00626 * 1 2 3 26 26 H 1.08997 * 109.47067 * 210.00074 * 1 2 3 27 27 H 1.08998 * 109.47093 * 330.00362 * 1 2 3 28 28 H 1.09000 * 109.47197 * 329.99120 * 3 2 1 29 29 H 1.09007 * 109.46342 * 209.99692 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99785 * 359.97438 * 14 12 2 32 32 H 1.07999 * 124.44727 * 315.23077 * 17 15 14 33 33 H 1.08005 * 124.44630 * 179.97438 * 18 17 15 34 34 H 0.96698 * 116.99912 * 180.02562 * 23 21 19 35 35 H 1.09003 * 111.03829 * 334.58399 * 24 15 14 36 36 H 1.08996 * 111.04194 * 98.48225 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1213 2.8807 1.6726 7 7 3.5488 3.6207 0.6730 8 14 3.4258 3.4239 3.4338 9 1 4.2303 2.3931 4.1377 10 1 4.1641 4.7124 3.4337 11 1 2.1258 3.5979 4.1300 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1976 -3.6031 0.0005 16 1 3.1316 -3.5013 -0.5519 17 6 2.4673 -4.0552 1.4168 18 6 2.2127 -5.3273 1.5606 19 6 1.7313 -5.9358 0.2640 20 1 0.8688 -6.5778 0.4431 21 6 2.8384 -6.7175 -0.3949 22 8 3.2784 -6.3597 -1.4618 23 8 3.3358 -7.8112 0.2036 24 6 1.3292 -4.7265 -0.6121 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6084 2.0284 -0.5140 29 1 3.1499 1.1383 -0.5138 30 1 4.0217 4.4488 0.8503 31 1 0.4950 -2.3344 0.0005 32 1 2.8242 -3.4106 2.2064 33 1 2.3314 -5.8734 2.4848 34 1 4.0453 -8.2795 -0.2573 35 1 0.2678 -4.5021 -0.5067 36 1 1.5891 -4.8963 -1.6569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092183015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:35 Heat of formation + Delta-G solvation = -117.406612 kcal Electronic energy + Delta-G solvation = -20332.266077 eV Core-core repulsion = 17009.212259 eV Total energy + Delta-G solvation = -3323.053818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85832 -40.94104 -39.07396 -37.06834 -36.54846 -35.12987 -34.30193 -30.41233 -30.00309 -28.62563 -27.18479 -25.00209 -23.98443 -21.39496 -21.14278 -20.07668 -18.98974 -18.90074 -18.62493 -17.92120 -17.79935 -16.95238 -16.51540 -16.14071 -15.99186 -15.26001 -14.75524 -14.43700 -14.27513 -13.86606 -13.58358 -13.45445 -13.16564 -13.07405 -12.96059 -12.76244 -12.75029 -12.51070 -12.49419 -12.30618 -12.16166 -11.84556 -11.72390 -11.07539 -10.62566 -10.22006 -10.11194 -9.30767 -8.19681 -6.35114 0.89623 1.28839 1.36883 1.41779 1.49047 1.95214 2.21348 2.30270 2.42548 3.08634 3.20074 3.41543 3.46418 4.05691 4.13739 4.26380 4.36412 4.52505 4.53863 4.69489 4.77358 4.84475 4.92225 5.00763 5.10883 5.22740 5.36549 5.54321 5.58138 5.63223 5.73382 5.82617 6.08997 6.18975 6.73970 6.99030 7.21937 7.32427 7.77465 8.86693 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.004025 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.499354 B = 6954.377304 C = 7248.620599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.627 5.627 3 C 0.276 3.724 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.280 1.280 10 H -0.278 1.278 11 H -0.258 1.258 12 C 0.692 3.308 13 O -0.645 6.645 14 N -0.722 5.722 15 C 0.172 3.828 16 H 0.059 0.941 17 C -0.173 4.173 18 C -0.132 4.132 19 C -0.054 4.054 20 H 0.164 0.836 21 C 0.491 3.509 22 O -0.551 6.551 23 O -0.506 6.506 24 C -0.108 4.108 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.027 0.973 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.411 0.589 32 H 0.111 0.889 33 H 0.165 0.835 34 H 0.427 0.573 35 H 0.127 0.873 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -22.442 0.990 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.362 5.362 3 C 0.154 3.846 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.183 1.183 12 C 0.393 3.607 13 O -0.527 6.527 14 N -0.381 5.381 15 C 0.067 3.933 16 H 0.077 0.923 17 C -0.192 4.192 18 C -0.150 4.150 19 C -0.073 4.073 20 H 0.181 0.819 21 C 0.334 3.666 22 O -0.441 6.441 23 O -0.320 6.320 24 C -0.146 4.146 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.250 0.750 32 H 0.129 0.871 33 H 0.182 0.818 34 H 0.288 0.712 35 H 0.145 0.855 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.898 -21.942 0.826 24.086 hybrid contribution 0.950 0.610 0.301 1.168 sum -8.948 -21.332 1.127 23.161 Atomic orbital electron populations 1.21840 0.78033 1.03800 1.02389 1.47321 1.07868 1.04943 1.76037 1.18641 0.90745 0.79310 0.95917 1.21708 1.37002 1.06321 0.93133 0.92954 1.25875 0.94879 0.96411 1.02075 1.70048 1.39076 1.14702 1.33129 0.85453 0.78881 0.77272 0.79079 1.20533 1.20275 1.18259 1.16221 0.84990 0.81566 0.77904 1.90841 1.14592 1.87010 1.60255 1.45042 1.09853 1.02882 1.80333 1.20741 0.95698 0.82762 0.94137 0.92308 1.23748 0.99970 0.97902 0.97583 1.23122 0.99841 0.94313 0.97750 1.20824 0.96294 0.96669 0.93494 0.81892 1.23532 0.82243 0.78409 0.82376 1.90747 1.60176 1.68687 1.24502 1.84485 1.54148 1.39267 1.54067 1.22788 1.01579 0.90241 0.99987 0.91277 0.89379 0.91181 0.95517 0.98780 0.92398 0.74981 0.87105 0.81795 0.71170 0.85502 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.45 10.20 127.77 1.30 3.76 16 2 N -0.63 -27.91 2.86 -869.30 -2.48 -30.39 16 3 C 0.28 15.51 5.16 85.63 0.44 15.95 16 4 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 8 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 12 C 0.69 31.25 8.28 179.05 1.48 32.74 16 13 O -0.65 -36.77 15.57 -4.00 -0.06 -36.83 16 14 N -0.72 -22.56 4.99 -458.12 -2.29 -24.85 16 15 C 0.17 4.95 3.24 44.93 0.15 5.09 16 16 H 0.06 2.23 7.56 -2.39 -0.02 2.22 16 17 C -0.17 -4.48 10.41 26.26 0.27 -4.20 16 18 C -0.13 -2.27 10.08 26.27 0.26 -2.00 16 19 C -0.05 -0.78 3.40 -11.60 -0.04 -0.82 16 20 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 21 C 0.49 9.20 7.64 71.23 0.54 9.74 16 22 O -0.55 -14.92 16.22 21.96 0.36 -14.56 16 23 O -0.51 -6.50 13.42 -51.44 -0.69 -7.19 16 24 C -0.11 -1.94 6.20 31.71 0.20 -1.75 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 1.94 6.36 -2.39 -0.02 1.93 16 27 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.03 1.50 8.07 -2.39 -0.02 1.49 16 29 H -0.01 -0.39 7.42 -2.38 -0.02 -0.41 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.41 9.25 6.15 -92.71 -0.57 8.68 16 32 H 0.11 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.43 2.34 9.10 -74.06 -0.67 1.67 16 35 H 0.13 1.38 7.82 -2.39 -0.02 1.36 16 36 H 0.09 1.86 6.95 -2.39 -0.02 1.84 16 Total: -1.00 -86.61 312.68 2.33 -84.28 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.13 Total: 11.71 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 5.32 Total: 27.32 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.49 Total: -112.52 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.40 Total: -58.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -86.61 2.33 -84.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092183015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.129 kcal (2) G-P(sol) polarization free energy of solvation -86.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds