Wall clock time and date at job start Mon Mar 30 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00325 * 2 1 4 4 C 1.50695 * 109.46878 * 270.00118 * 3 2 1 5 5 H 1.08004 * 120.00546 * 0.27446 * 4 3 2 6 6 C 1.37885 * 119.99721 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.34781 * 120.00077 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99864 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99737 * 359.97438 * 12 2 1 15 15 C 1.46499 * 119.99704 * 180.02562 * 14 12 2 16 16 H 1.08999 * 110.34890 * 35.83869 * 15 14 12 17 17 C 1.51100 * 110.38816 * 273.54624 * 15 14 12 18 18 C 1.30524 * 111.10373 * 224.75588 * 17 15 14 19 19 C 1.51108 * 111.10740 * 359.97438 * 18 17 15 20 20 H 1.08990 * 110.38925 * 257.63044 * 19 18 17 21 21 C 1.50699 * 110.38680 * 135.24872 * 19 18 17 22 22 O 1.20827 * 119.99970 * 241.46214 * 21 19 18 23 23 O 1.34234 * 119.99840 * 61.45597 * 21 19 18 24 24 C 1.54634 * 104.71911 * 16.44067 * 19 18 17 25 25 H 1.09001 * 109.47028 * 89.99930 * 1 2 3 26 26 H 1.08992 * 109.47028 * 209.99649 * 1 2 3 27 27 H 1.08998 * 109.47241 * 330.00359 * 1 2 3 28 28 H 1.08992 * 109.47424 * 150.00015 * 3 2 1 29 29 H 1.08997 * 109.46711 * 29.99616 * 3 2 1 30 30 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 31 31 H 0.96998 * 120.00245 * 0.02562 * 14 12 2 32 32 H 1.07996 * 124.44739 * 44.77344 * 17 15 14 33 33 H 1.07998 * 124.44828 * 180.02562 * 18 17 15 34 34 H 0.96700 * 116.99714 * 180.02562 * 23 21 19 35 35 H 1.09009 * 111.03458 * 217.32850 * 24 19 18 36 36 H 1.09005 * 111.04209 * 93.39852 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0939 1.0982 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5535 3.6180 -0.6731 8 14 3.4381 3.4168 -3.4340 9 1 2.3079 4.2592 -3.9014 10 1 4.6981 4.2002 -3.4961 11 1 3.5562 2.2195 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1672 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1975 -3.6031 -0.0005 16 1 3.1045 -3.5171 0.5978 17 6 2.5366 -4.0152 -1.4142 18 6 2.2901 -5.2825 -1.6062 19 6 1.7461 -5.9271 -0.3525 20 1 2.5244 -6.5051 0.1457 21 6 0.5678 -6.8065 -0.6831 22 8 -0.5179 -6.5644 -0.2113 23 8 0.7244 -7.8586 -1.5020 24 6 1.3017 -4.7430 0.5371 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 3.1499 1.1384 0.5138 29 1 1.6085 2.0284 0.5138 30 1 4.0304 4.4439 -0.8504 31 1 0.4950 -2.3344 -0.0005 32 1 2.9313 -3.3487 -2.1667 33 1 2.4543 -5.8023 -2.5385 34 1 -0.0604 -8.3931 -1.6849 35 1 1.5111 -4.9430 1.5881 36 1 0.2464 -4.5149 0.3867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092183016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:40 Heat of formation + Delta-G solvation = -90.777420 kcal Electronic energy + Delta-G solvation = -20246.786683 eV Core-core repulsion = 16924.887594 eV Total energy + Delta-G solvation = -3321.899090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90142 -39.55747 -38.01347 -36.35682 -34.73304 -33.51167 -32.37016 -29.57669 -28.38420 -27.29991 -25.58428 -23.40512 -22.41299 -20.59383 -19.71449 -19.11781 -18.11220 -17.45476 -17.07625 -16.49540 -16.41266 -15.64799 -15.20430 -14.67616 -14.37619 -13.97407 -13.33142 -13.10603 -12.93801 -12.48983 -12.26847 -12.08141 -12.05604 -11.89835 -11.75569 -11.60876 -11.51159 -11.15703 -10.90271 -10.85367 -10.51724 -10.10505 -9.60032 -9.38262 -9.11480 -8.69812 -8.38777 -7.54596 -5.99470 -4.03534 1.81966 2.12447 2.76513 3.32845 3.39188 3.42257 3.49535 3.95969 4.20938 4.36728 4.46525 4.70114 4.83871 4.95959 5.04058 5.27204 5.34205 5.40952 5.58892 5.62955 5.87037 5.95757 5.98446 6.18817 6.20319 6.32765 6.56851 6.86976 6.95243 7.42109 7.60552 7.61065 7.78202 8.00358 8.29788 8.75764 8.97826 9.40511 9.62419 11.08409 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.003928 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.654061 B = 7127.147071 C = 7432.255872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.260 3.740 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.700 3.300 13 O -0.585 6.585 14 N -0.750 5.750 15 C 0.181 3.819 16 H 0.106 0.894 17 C -0.130 4.130 18 C -0.178 4.178 19 C -0.055 4.055 20 H 0.124 0.876 21 C 0.490 3.510 22 O -0.515 6.515 23 O -0.515 6.515 24 C -0.118 4.118 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.392 0.608 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 -20.100 0.924 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.354 5.354 3 C 0.141 3.859 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.401 3.599 13 O -0.463 6.463 14 N -0.408 5.408 15 C 0.075 3.925 16 H 0.123 0.877 17 C -0.150 4.150 18 C -0.197 4.197 19 C -0.074 4.074 20 H 0.141 0.859 21 C 0.332 3.668 22 O -0.403 6.403 23 O -0.326 6.326 24 C -0.156 4.156 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.228 0.772 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.195 -19.544 1.212 20.538 hybrid contribution -0.843 0.006 -1.262 1.518 sum -7.037 -19.538 -0.050 20.767 Atomic orbital electron populations 1.21519 0.81910 1.01262 1.00887 1.47445 1.05531 1.06518 1.75908 1.19204 0.92341 0.77071 0.97301 1.21477 1.36088 1.06164 0.92533 0.92571 1.24932 0.95474 0.96426 0.97348 1.69933 1.38630 1.14351 1.30654 0.86505 0.77624 0.78524 0.84794 1.20719 1.21110 1.19977 1.15930 0.85520 0.80212 0.78189 1.90882 1.11564 1.86001 1.57806 1.45376 1.09161 1.04179 1.82118 1.20572 0.95636 0.82406 0.93851 0.87668 1.23944 0.96491 0.96125 0.98417 1.22843 1.03801 0.95834 0.97185 1.20852 0.94111 0.95161 0.97265 0.85861 1.23406 0.90257 0.78711 0.74411 1.90717 1.28231 1.70544 1.50816 1.84552 1.44953 1.40382 1.62721 1.22857 1.01630 0.91670 0.99406 0.93469 0.93290 0.91221 0.93791 0.95024 0.92780 0.77226 0.84613 0.84610 0.73297 0.89081 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.25 59.85 0.61 2.05 16 2 N -0.62 -13.43 2.86 -188.75 -0.54 -13.96 16 3 C 0.26 6.93 5.20 -5.19 -0.03 6.91 16 4 C -0.52 -15.11 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.70 14.97 8.27 -86.91 -0.72 14.25 16 13 O -0.59 -15.06 15.62 5.29 0.08 -14.98 16 14 N -0.75 -11.75 5.01 -58.78 -0.29 -12.05 16 15 C 0.18 2.42 3.20 -68.04 -0.22 2.20 16 16 H 0.11 1.54 7.65 -51.93 -0.40 1.14 16 17 C -0.13 -1.68 10.39 -35.70 -0.37 -2.06 16 18 C -0.18 -1.82 10.04 -35.69 -0.36 -2.18 16 19 C -0.05 -0.50 3.40 -91.87 -0.31 -0.81 16 20 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.49 4.73 7.66 36.01 0.28 5.01 16 22 O -0.52 -6.44 16.27 -18.75 -0.31 -6.74 16 23 O -0.51 -3.72 13.39 -39.27 -0.53 -4.24 16 24 C -0.12 -1.19 6.14 -25.02 -0.15 -1.34 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 27 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 29 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 31 H 0.39 5.18 6.12 -40.82 -0.25 4.93 16 32 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.41 1.27 9.10 45.56 0.41 1.69 16 35 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.10 1.03 6.71 -51.93 -0.35 0.69 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -36.17 312.50 -6.62 -42.79 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.77 Total: 3.32 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.69 Total: 10.23 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.10 Total: -52.20 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.75 Total: -25.96 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.17 -6.62 -42.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092183016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.983 kcal (2) G-P(sol) polarization free energy of solvation -36.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds