Wall clock time and date at job start Mon Mar 30 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00325 * 2 1 4 4 C 1.50695 * 109.46878 * 270.00118 * 3 2 1 5 5 H 1.08004 * 120.00546 * 0.27446 * 4 3 2 6 6 C 1.37885 * 119.99721 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.34781 * 120.00077 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99864 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99737 * 359.97438 * 12 2 1 15 15 C 1.46499 * 119.99704 * 180.02562 * 14 12 2 16 16 H 1.08999 * 110.34890 * 35.83869 * 15 14 12 17 17 C 1.51100 * 110.38816 * 273.54624 * 15 14 12 18 18 C 1.30524 * 111.10373 * 224.75588 * 17 15 14 19 19 C 1.51108 * 111.10740 * 359.97438 * 18 17 15 20 20 H 1.08990 * 110.38925 * 257.63044 * 19 18 17 21 21 C 1.50699 * 110.38680 * 135.24872 * 19 18 17 22 22 O 1.20827 * 119.99970 * 241.46214 * 21 19 18 23 23 O 1.34234 * 119.99840 * 61.45597 * 21 19 18 24 24 C 1.54634 * 104.71911 * 16.44067 * 19 18 17 25 25 H 1.09001 * 109.47028 * 89.99930 * 1 2 3 26 26 H 1.08992 * 109.47028 * 209.99649 * 1 2 3 27 27 H 1.08998 * 109.47241 * 330.00359 * 1 2 3 28 28 H 1.08992 * 109.47424 * 150.00015 * 3 2 1 29 29 H 1.08997 * 109.46711 * 29.99616 * 3 2 1 30 30 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 31 31 H 0.96998 * 120.00245 * 0.02562 * 14 12 2 32 32 H 1.07996 * 124.44739 * 44.77344 * 17 15 14 33 33 H 1.07998 * 124.44828 * 180.02562 * 18 17 15 34 34 H 0.96700 * 116.99714 * 180.02562 * 23 21 19 35 35 H 1.09009 * 111.03458 * 217.32850 * 24 19 18 36 36 H 1.09005 * 111.04209 * 93.39852 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0939 1.0982 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5535 3.6180 -0.6731 8 14 3.4381 3.4168 -3.4340 9 1 2.3079 4.2592 -3.9014 10 1 4.6981 4.2002 -3.4961 11 1 3.5562 2.2195 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1672 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1975 -3.6031 -0.0005 16 1 3.1045 -3.5171 0.5978 17 6 2.5366 -4.0152 -1.4142 18 6 2.2901 -5.2825 -1.6062 19 6 1.7461 -5.9271 -0.3525 20 1 2.5244 -6.5051 0.1457 21 6 0.5678 -6.8065 -0.6831 22 8 -0.5179 -6.5644 -0.2113 23 8 0.7244 -7.8586 -1.5020 24 6 1.3017 -4.7430 0.5371 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 3.1499 1.1384 0.5138 29 1 1.6085 2.0284 0.5138 30 1 4.0304 4.4439 -0.8504 31 1 0.4950 -2.3344 -0.0005 32 1 2.9313 -3.3487 -2.1667 33 1 2.4543 -5.8023 -2.5385 34 1 -0.0604 -8.3931 -1.6849 35 1 1.5111 -4.9430 1.5881 36 1 0.2464 -4.5149 0.3867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092183016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:39 Heat of formation + Delta-G solvation = -117.635711 kcal Electronic energy + Delta-G solvation = -20247.951346 eV Core-core repulsion = 16924.887594 eV Total energy + Delta-G solvation = -3323.063752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75925 -40.94275 -39.11709 -37.05899 -36.53434 -35.11357 -34.29545 -30.43993 -30.01004 -28.69425 -27.19975 -24.99205 -23.70707 -21.49383 -21.10757 -20.14954 -18.99142 -18.76916 -18.63490 -18.10981 -17.35461 -17.11395 -16.53308 -16.04046 -15.99233 -15.34937 -14.75603 -14.48466 -14.28779 -13.89332 -13.59648 -13.48726 -13.14751 -13.12600 -12.89022 -12.76797 -12.68632 -12.49575 -12.45876 -12.41216 -12.17289 -11.71987 -11.70256 -11.05539 -10.61692 -10.18160 -10.12957 -9.31257 -8.19532 -6.34299 0.98074 1.29805 1.37001 1.40103 1.50425 1.87153 2.22382 2.34498 2.42512 3.08682 3.18540 3.42935 3.46003 4.07059 4.12402 4.18478 4.33621 4.51529 4.55346 4.67254 4.77623 4.84519 4.96737 5.02499 5.05122 5.23297 5.37686 5.54682 5.59050 5.64380 5.75052 5.82603 6.09855 6.17119 6.74725 7.01916 7.20381 7.32912 7.77677 8.86907 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.003928 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.654061 B = 7127.147071 C = 7432.255872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.628 5.628 3 C 0.276 3.724 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.695 3.305 13 O -0.638 6.638 14 N -0.728 5.728 15 C 0.176 3.824 16 H 0.086 0.914 17 C -0.170 4.170 18 C -0.139 4.139 19 C -0.054 4.054 20 H 0.154 0.846 21 C 0.498 3.502 22 O -0.546 6.546 23 O -0.508 6.508 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.075 0.925 28 H -0.001 1.001 29 H 0.027 0.973 30 H 0.267 0.733 31 H 0.407 0.593 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.428 0.572 35 H 0.110 0.890 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 -22.147 -0.026 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.363 5.363 3 C 0.154 3.846 4 C -0.581 4.581 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.396 3.604 13 O -0.520 6.520 14 N -0.386 5.386 15 C 0.071 3.929 16 H 0.104 0.896 17 C -0.190 4.190 18 C -0.158 4.158 19 C -0.073 4.073 20 H 0.172 0.828 21 C 0.342 3.658 22 O -0.436 6.436 23 O -0.321 6.321 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.017 0.983 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.245 0.755 32 H 0.127 0.873 33 H 0.172 0.828 34 H 0.290 0.710 35 H 0.129 0.871 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.626 -21.658 0.252 22.963 hybrid contribution -0.436 0.506 -0.962 1.171 sum -8.063 -21.152 -0.710 22.648 Atomic orbital electron populations 1.21791 0.78369 1.03653 1.02039 1.47330 1.07689 1.05190 1.76089 1.18668 0.90897 0.79185 0.95839 1.21727 1.36645 1.06514 0.93209 0.93244 1.25846 0.94941 0.96393 1.01958 1.70048 1.39040 1.14794 1.32954 0.85413 0.78116 0.78102 0.79129 1.18816 1.20482 1.20014 1.16154 0.85024 0.81349 0.77862 1.90833 1.14120 1.86945 1.60099 1.45189 1.09805 1.03282 1.80367 1.20774 0.95627 0.82101 0.94372 0.89587 1.23668 1.00203 0.97201 0.97913 1.23056 1.00043 0.94552 0.98102 1.20912 0.94860 0.95067 0.96466 0.82830 1.23275 0.89508 0.78920 0.74104 1.90721 1.29278 1.71507 1.52129 1.84502 1.46231 1.39780 1.61635 1.22797 1.00532 0.90406 1.00668 0.92825 0.89219 0.90604 0.98308 0.95552 0.92390 0.75521 0.87339 0.82752 0.71015 0.87106 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.62 10.25 127.77 1.31 3.93 16 2 N -0.63 -27.85 2.86 -869.33 -2.48 -30.33 16 3 C 0.28 15.34 5.20 85.63 0.45 15.79 16 4 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.43 5.46 84.66 0.46 0.90 16 7 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 8 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 9 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 C 0.69 30.58 8.27 179.05 1.48 32.06 16 13 O -0.64 -34.66 15.62 -3.98 -0.06 -34.73 16 14 N -0.73 -22.65 5.01 -458.14 -2.30 -24.95 16 15 C 0.18 4.63 3.20 44.92 0.14 4.78 16 16 H 0.09 2.59 7.65 -2.39 -0.02 2.57 16 17 C -0.17 -4.36 10.39 26.26 0.27 -4.09 16 18 C -0.14 -2.52 10.04 26.27 0.26 -2.26 16 19 C -0.05 -0.81 3.40 -11.60 -0.04 -0.85 16 20 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 21 C 0.50 7.95 7.66 71.24 0.55 8.49 16 22 O -0.55 -12.14 16.27 21.96 0.36 -11.78 16 23 O -0.51 -5.41 13.39 -51.45 -0.69 -6.10 16 24 C -0.11 -1.90 6.14 31.70 0.19 -1.70 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.09 2.03 6.36 -2.39 -0.02 2.02 16 27 H 0.08 2.27 7.89 -2.39 -0.02 2.26 16 28 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 29 H 0.03 1.47 7.89 -2.39 -0.02 1.45 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.41 10.10 6.12 -92.71 -0.57 9.53 16 32 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.43 1.12 9.10 -74.06 -0.67 0.44 16 35 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.09 1.77 6.71 -2.38 -0.02 1.76 16 Total: -1.00 -81.68 312.50 2.33 -79.35 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -0.12 Total: 12.29 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 5.32 Total: 25.15 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.50 Total: -111.95 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.39 Total: -52.60 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -81.68 2.33 -79.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092183016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.290 kcal (2) G-P(sol) polarization free energy of solvation -81.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds