Wall clock time and date at job start Mon Mar 30 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00010 * 2 1 4 4 C 1.53006 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47282 * 64.99932 * 4 3 2 6 6 C 1.46504 * 119.99548 * 274.57162 * 5 4 3 7 7 C 1.50708 * 109.46595 * 263.51115 * 6 5 4 8 8 H 1.07999 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99678 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00301 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99846 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47231 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47091 * 120.00064 * 11 9 7 14 14 H 1.48500 * 109.47072 * 240.00267 * 11 9 7 15 15 C 1.34772 * 119.99769 * 94.56457 * 5 4 3 16 16 O 1.21552 * 120.00168 * 4.34882 * 15 5 4 17 17 C 1.47772 * 119.99664 * 184.33862 * 15 5 4 18 18 N 1.32154 * 126.44686 * 354.05187 * 17 15 5 19 19 C 1.32951 * 107.32144 * 179.97438 * 18 17 15 20 20 C 1.50694 * 125.76417 * 180.02562 * 19 18 17 21 21 N 1.30937 * 108.47050 * 0.02562 * 19 18 17 22 22 N 1.28865 * 109.00642 * 359.97438 * 21 19 18 23 23 H 0.96992 * 125.95366 * 179.97438 * 22 21 19 24 24 H 1.08995 * 109.47467 * 300.00173 * 1 2 3 25 25 H 1.09000 * 109.46826 * 60.00401 * 1 2 3 26 26 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47279 * 59.99844 * 3 2 1 28 28 H 1.09002 * 109.46953 * 299.99796 * 3 2 1 29 29 H 1.08999 * 109.46861 * 304.99500 * 4 3 2 30 30 H 1.08999 * 109.46736 * 184.99987 * 4 3 2 31 31 H 1.08999 * 109.47486 * 23.51071 * 6 5 4 32 32 H 1.08998 * 109.46899 * 143.51621 * 6 5 4 33 33 H 0.96997 * 120.00275 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47263 * 90.00448 * 20 19 18 35 35 H 1.09007 * 109.46855 * 209.99791 * 20 19 18 36 36 H 1.08993 * 109.47576 * 329.99981 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.0105 -0.8957 -1.3724 7 6 5.4059 -1.3909 -1.0915 8 1 6.1892 -0.6887 -0.8473 9 6 5.6826 -2.7404 -1.1473 10 7 4.7290 -3.5955 -1.4461 11 14 7.4122 -3.3543 -0.7998 12 1 8.2944 -2.2003 -0.4914 13 1 7.3851 -4.2801 0.3610 14 1 7.9322 -4.0706 -1.9922 15 6 4.3515 1.3357 -2.2902 16 8 4.3991 2.5437 -2.1642 17 6 4.7047 0.7131 -3.5831 18 7 4.8038 -0.5813 -3.8301 19 6 5.1398 -0.7156 -5.1094 20 6 5.3615 -2.0207 -5.8294 21 7 5.2454 0.4776 -5.6380 22 7 4.9870 1.3607 -4.7358 23 1 4.9944 2.3224 -4.8616 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8428 30 1 3.9784 2.1766 0.0902 31 1 3.3174 -1.3361 -0.6557 32 1 3.7195 -1.1829 -2.3828 33 1 4.9236 -4.5449 -1.4850 34 1 4.4206 -2.3618 -6.2615 35 1 6.0950 -1.8777 -6.6231 36 1 5.7292 -2.7666 -5.1249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095063985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:11 Heat of formation + Delta-G solvation = 20.948990 kcal Electronic energy + Delta-G solvation = -21321.626463 eV Core-core repulsion = 18036.864946 eV Total energy + Delta-G solvation = -3284.761518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.86896 -39.12531 -37.41893 -35.13263 -33.21838 -32.45506 -31.78238 -29.67215 -27.89539 -26.95982 -26.02615 -24.20428 -22.76565 -21.96067 -20.58628 -19.41141 -17.47268 -16.74708 -16.42787 -15.96370 -15.79606 -15.63525 -15.07288 -14.61018 -14.33832 -13.85530 -13.37417 -12.94512 -12.56921 -12.29486 -12.16085 -11.93658 -11.81559 -11.75998 -11.54464 -11.27018 -10.85778 -10.80286 -10.63903 -10.07510 -9.88442 -9.69975 -9.52522 -9.36515 -9.09947 -8.90957 -8.20284 -7.73922 -5.88985 -3.89565 1.69694 2.92093 3.01291 3.35181 3.42998 3.47199 3.80466 3.86980 4.13288 4.51873 4.69744 5.02392 5.25593 5.34606 5.46926 5.47489 5.58879 5.61111 5.63169 5.86047 5.96294 5.99931 6.04169 6.27932 6.29980 6.79019 6.83088 6.87212 7.23025 7.45442 7.65819 7.80159 8.02542 8.24290 8.37743 8.56249 8.80495 9.11134 9.71158 11.19634 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.009448 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.329156 B = 2962.744123 C = 4263.186512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.048 3.952 4 C 0.118 3.882 5 N -0.554 5.554 6 C 0.224 3.776 7 C -0.509 4.509 8 H 0.049 0.951 9 C 0.073 3.927 10 N -0.886 5.886 11 Si 0.884 3.116 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.597 3.403 16 O -0.577 6.577 17 C 0.178 3.822 18 N -0.394 5.394 19 C 0.173 3.827 20 C -0.050 4.050 21 N -0.316 5.316 22 N -0.379 5.379 23 H 0.447 0.553 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 6.777 -2.359 8.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.282 5.282 6 C 0.105 3.895 7 C -0.549 4.549 8 H 0.067 0.933 9 C -0.129 4.129 10 N -0.525 5.525 11 Si 0.712 3.288 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.211 1.211 15 C 0.381 3.619 16 O -0.459 6.459 17 C -0.100 4.100 18 N -0.121 5.121 19 C -0.106 4.106 20 C -0.110 4.110 21 N -0.155 5.155 22 N -0.102 5.102 23 H 0.293 0.707 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.927 6.691 -2.675 8.729 hybrid contribution 0.815 0.476 0.274 0.982 sum -4.112 7.166 -2.401 8.604 Atomic orbital electron populations 1.22688 0.82065 1.02559 0.99089 1.88098 1.18744 1.27037 1.95178 1.23000 0.94836 0.85264 0.99877 1.21512 0.91430 1.00015 0.87582 1.48096 1.59080 1.10888 1.10169 1.20156 0.97674 0.70353 1.01297 1.21254 0.94787 0.91990 1.46829 0.93258 1.24700 0.96257 0.96593 0.95342 1.69942 1.31652 1.02073 1.48858 0.86681 0.85593 0.78725 0.77762 1.20223 1.21235 1.21089 1.16530 0.78246 0.85205 0.81904 1.90720 1.57743 1.13637 1.83760 1.24338 1.05657 0.88718 0.91292 1.72066 1.14744 1.12530 1.12765 1.24480 1.02063 0.94000 0.90043 1.19959 1.02403 0.89571 0.99034 1.74024 1.23237 0.99960 1.18237 1.44826 1.48514 1.10453 1.06425 0.70688 0.94705 0.94686 0.89720 0.92815 0.93521 0.88877 0.88824 0.93495 0.90352 0.93210 0.90508 0.90875 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.53 9.22 -35.23 -0.32 -6.85 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.12 2.09 5.91 -4.04 -0.02 2.07 16 5 N -0.55 -11.91 2.46 -176.20 -0.43 -12.34 16 6 C 0.22 5.56 4.51 -5.19 -0.02 5.54 16 7 C -0.51 -13.76 8.46 -34.44 -0.29 -14.05 16 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 10 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 11 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.60 12.71 7.62 -12.36 -0.09 12.61 16 16 O -0.58 -12.16 16.59 5.32 0.09 -12.08 16 17 C 0.18 3.72 7.71 -155.26 -1.20 2.52 16 18 N -0.39 -8.87 7.24 -8.64 -0.06 -8.93 16 19 C 0.17 3.41 8.14 -156.92 -1.28 2.13 16 20 C -0.05 -0.80 10.51 36.00 0.38 -0.42 16 21 N -0.32 -5.75 12.28 32.41 0.40 -5.35 16 22 N -0.38 -6.67 6.98 32.25 0.23 -6.45 16 23 H 0.45 6.31 8.96 -190.21 -1.70 4.60 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 30 H 0.09 1.54 7.24 -51.93 -0.38 1.16 16 31 H 0.05 1.25 6.85 -51.93 -0.36 0.89 16 32 H 0.08 2.09 5.32 -51.93 -0.28 1.81 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -31.84 312.27 -7.03 -38.87 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.06 Total: 1.47 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: -1.28 Total: 14.82 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.86 Total: -57.37 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.24 Total: -18.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.84 -7.03 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095063985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.814 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds