Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00010 * 2 1 4 4 C 1.53006 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47282 * 64.99932 * 4 3 2 6 6 C 1.46504 * 119.99548 * 274.57162 * 5 4 3 7 7 C 1.50708 * 109.46595 * 263.51115 * 6 5 4 8 8 H 1.07999 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99678 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00301 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99846 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47231 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47091 * 120.00064 * 11 9 7 14 14 H 1.48500 * 109.47072 * 240.00267 * 11 9 7 15 15 C 1.34772 * 119.99769 * 94.56457 * 5 4 3 16 16 O 1.21552 * 120.00168 * 4.34882 * 15 5 4 17 17 C 1.47772 * 119.99664 * 184.33862 * 15 5 4 18 18 N 1.32154 * 126.44686 * 354.05187 * 17 15 5 19 19 C 1.32951 * 107.32144 * 179.97438 * 18 17 15 20 20 C 1.50694 * 125.76417 * 180.02562 * 19 18 17 21 21 N 1.30937 * 108.47050 * 0.02562 * 19 18 17 22 22 N 1.28865 * 109.00642 * 359.97438 * 21 19 18 23 23 H 0.96992 * 125.95366 * 179.97438 * 22 21 19 24 24 H 1.08995 * 109.47467 * 300.00173 * 1 2 3 25 25 H 1.09000 * 109.46826 * 60.00401 * 1 2 3 26 26 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47279 * 59.99844 * 3 2 1 28 28 H 1.09002 * 109.46953 * 299.99796 * 3 2 1 29 29 H 1.08999 * 109.46861 * 304.99500 * 4 3 2 30 30 H 1.08999 * 109.46736 * 184.99987 * 4 3 2 31 31 H 1.08999 * 109.47486 * 23.51071 * 6 5 4 32 32 H 1.08998 * 109.46899 * 143.51621 * 6 5 4 33 33 H 0.96997 * 120.00275 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47263 * 90.00448 * 20 19 18 35 35 H 1.09007 * 109.46855 * 209.99791 * 20 19 18 36 36 H 1.08993 * 109.47576 * 329.99981 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.0105 -0.8957 -1.3724 7 6 5.4059 -1.3909 -1.0915 8 1 6.1892 -0.6887 -0.8473 9 6 5.6826 -2.7404 -1.1473 10 7 4.7290 -3.5955 -1.4461 11 14 7.4122 -3.3543 -0.7998 12 1 8.2944 -2.2003 -0.4914 13 1 7.3851 -4.2801 0.3610 14 1 7.9322 -4.0706 -1.9922 15 6 4.3515 1.3357 -2.2902 16 8 4.3991 2.5437 -2.1642 17 6 4.7047 0.7131 -3.5831 18 7 4.8038 -0.5813 -3.8301 19 6 5.1398 -0.7156 -5.1094 20 6 5.3615 -2.0207 -5.8294 21 7 5.2454 0.4776 -5.6380 22 7 4.9870 1.3607 -4.7358 23 1 4.9944 2.3224 -4.8616 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8428 30 1 3.9784 2.1766 0.0902 31 1 3.3174 -1.3361 -0.6557 32 1 3.7195 -1.1829 -2.3828 33 1 4.9236 -4.5449 -1.4850 34 1 4.4206 -2.3618 -6.2615 35 1 6.0950 -1.8777 -6.6231 36 1 5.7292 -2.7666 -5.1249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095063985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = -0.121244 kcal Electronic energy + Delta-G solvation = -21322.540137 eV Core-core repulsion = 18036.864946 eV Total energy + Delta-G solvation = -3285.675192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.39265 -40.74181 -38.71139 -36.81729 -34.72382 -34.44259 -33.30803 -31.14481 -29.28831 -28.81826 -27.21809 -25.75394 -24.64494 -23.44805 -22.06231 -20.96479 -19.10405 -18.51883 -18.08542 -17.47787 -17.31979 -17.06926 -16.47082 -16.29759 -15.95984 -15.33583 -14.85601 -14.45201 -14.16587 -13.80115 -13.63882 -13.46680 -13.37153 -13.15213 -12.90909 -12.77339 -12.68552 -12.59755 -12.09383 -11.95558 -11.60799 -11.42633 -11.32874 -10.82980 -10.56676 -10.38748 -10.23715 -9.48616 -7.98289 -6.04933 0.11519 1.41652 1.43055 1.45708 1.46649 1.54354 2.20132 2.36148 2.53088 2.96628 3.12224 3.35027 3.52955 3.77780 4.13897 4.21728 4.40612 4.54408 4.57524 4.61046 4.80386 4.81309 4.88255 4.89309 4.92547 5.11952 5.30358 5.40736 5.62026 5.85010 5.88571 6.00239 6.29103 6.31755 6.45476 6.89919 7.05398 7.24143 7.58848 9.09763 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.009448 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.329156 B = 2962.744123 C = 4263.186512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.054 3.946 4 C 0.111 3.889 5 N -0.561 5.561 6 C 0.247 3.753 7 C -0.514 4.514 8 H 0.035 0.965 9 C 0.034 3.966 10 N -0.911 5.911 11 Si 0.938 3.062 12 H -0.281 1.281 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.596 3.404 16 O -0.577 6.577 17 C 0.159 3.841 18 N -0.433 5.433 19 C 0.159 3.841 20 C -0.048 4.048 21 N -0.301 5.301 22 N -0.358 5.358 23 H 0.462 0.538 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.261 0.739 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 7.460 -2.647 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.023 4.023 4 C -0.011 4.011 5 N -0.289 5.289 6 C 0.127 3.873 7 C -0.553 4.553 8 H 0.053 0.947 9 C -0.166 4.166 10 N -0.551 5.551 11 Si 0.765 3.235 12 H -0.206 1.206 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.380 3.620 16 O -0.459 6.459 17 C -0.119 4.119 18 N -0.161 5.161 19 C -0.120 4.120 20 C -0.106 4.106 21 N -0.141 5.141 22 N -0.084 5.084 23 H 0.312 0.688 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.812 7.413 -2.955 9.319 hybrid contribution 0.746 0.323 0.332 0.878 sum -4.066 7.736 -2.622 9.124 Atomic orbital electron populations 1.22862 0.79992 1.03278 1.00656 1.88041 1.21166 1.28266 1.95494 1.22966 0.92974 0.84940 1.01426 1.21763 0.93424 1.00143 0.85809 1.48049 1.59492 1.09764 1.11573 1.19615 0.95914 0.72239 0.99529 1.21347 0.95304 0.91978 1.46637 0.94712 1.25286 0.99260 0.96771 0.95244 1.70029 1.33184 1.02327 1.49556 0.85837 0.81782 0.78046 0.77831 1.20575 1.20549 1.20534 1.16594 0.78094 0.85251 0.82070 1.90704 1.57904 1.13367 1.83909 1.24259 1.06825 0.88871 0.91924 1.71980 1.15921 1.13642 1.14528 1.25124 1.01920 0.95489 0.89494 1.20080 1.04112 0.87449 0.99008 1.74017 1.22517 0.99663 1.17866 1.44820 1.46974 1.11210 1.05389 0.68848 0.92134 0.94008 0.89564 0.89163 0.93806 0.89479 0.87474 0.95701 0.91940 0.93021 0.88753 0.88055 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.21 9.22 -148.98 -1.37 -15.59 16 3 C 0.05 1.62 6.28 71.98 0.45 2.07 16 4 C 0.11 3.88 5.91 86.38 0.51 4.39 16 5 N -0.56 -24.22 2.46 -829.64 -2.04 -26.26 16 6 C 0.25 12.54 4.51 85.63 0.39 12.93 16 7 C -0.51 -28.11 8.46 25.60 0.22 -27.89 16 8 H 0.03 1.96 7.81 -2.91 -0.02 1.94 16 9 C 0.03 1.88 5.46 84.65 0.46 2.34 16 10 N -0.91 -51.91 13.29 21.45 0.28 -51.62 16 11 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 C 0.60 25.20 7.62 86.77 0.66 25.86 16 16 O -0.58 -23.74 16.59 -3.88 -0.06 -23.81 16 17 C 0.16 6.60 7.71 136.70 1.05 7.65 16 18 N -0.43 -19.55 7.24 -181.25 -1.31 -20.87 16 19 C 0.16 6.10 8.14 138.65 1.13 7.23 16 20 C -0.05 -1.45 10.51 71.23 0.75 -0.70 16 21 N -0.30 -10.52 12.28 -51.39 -0.63 -11.15 16 22 N -0.36 -12.18 6.98 -51.87 -0.36 -12.54 16 23 H 0.46 12.28 8.96 -219.80 -1.97 10.31 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 3.11 8.11 -2.39 -0.02 3.10 16 30 H 0.11 3.41 7.24 -2.39 -0.02 3.39 16 31 H 0.02 1.37 6.85 -2.39 -0.02 1.35 16 32 H 0.06 3.42 5.32 -2.39 -0.01 3.41 16 33 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -67.48 312.27 2.53 -64.95 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.86 Total: 14.98 kcal Atomic # 6 Polarization: 28.96 SS G_CDS: 6.87 Total: 35.83 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -4.06 Total: -122.44 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.44 Total: -39.39 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.48 2.53 -64.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095063985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.833 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds