Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46969 * 162.66210 * 3 2 1 5 5 C 1.36937 * 119.99796 * 88.17891 * 4 3 2 6 6 H 1.07995 * 120.00080 * 35.20023 * 5 4 3 7 7 C 1.38807 * 119.99785 * 215.20381 * 5 4 3 8 8 N 1.31623 * 120.00564 * 25.87142 * 7 5 4 9 9 Si 1.86807 * 119.99915 * 205.87193 * 7 5 4 10 10 H 1.48491 * 109.47038 * 59.99835 * 9 7 5 11 11 H 1.48498 * 109.47049 * 300.00030 * 9 7 5 12 12 H 1.48503 * 109.47077 * 180.02562 * 9 7 5 13 13 C 1.46496 * 119.99982 * 268.17730 * 4 3 2 14 14 C 1.52994 * 109.47380 * 269.99876 * 13 4 3 15 15 H 1.09000 * 109.86943 * 59.30269 * 14 13 4 16 16 C 1.54100 * 109.88296 * 180.30628 * 14 13 4 17 17 C 1.54815 * 104.18639 * 121.45524 * 16 14 13 18 18 C 1.54994 * 102.09476 * 20.88274 * 17 16 14 19 19 H 1.09001 * 110.61842 * 81.62971 * 18 17 16 20 20 C 1.50693 * 110.61960 * 204.47537 * 18 17 16 21 21 O 1.21287 * 120.00316 * 115.00094 * 20 18 17 22 22 N 1.34781 * 120.00017 * 294.99940 * 20 18 17 23 23 N 1.36600 * 120.00003 * 179.97438 * 22 20 18 24 24 O 1.43744 * 109.88190 * 298.29749 * 14 13 4 25 25 H 1.09000 * 109.46869 * 42.66591 * 3 2 1 26 26 H 1.08997 * 109.47254 * 282.66588 * 3 2 1 27 27 H 0.97001 * 119.99518 * 5.98968 * 8 7 5 28 28 H 1.08994 * 109.47420 * 30.00301 * 13 4 3 29 29 H 1.09001 * 109.46780 * 149.99846 * 13 4 3 30 30 H 1.08993 * 110.49264 * 240.13170 * 16 14 13 31 31 H 1.09004 * 110.48724 * 2.78319 * 16 14 13 32 32 H 1.09003 * 110.90331 * 139.08345 * 17 16 14 33 33 H 1.09007 * 110.90676 * 262.65070 * 17 16 14 34 34 H 0.96998 * 120.00075 * 0.02562 * 22 20 18 35 35 H 1.00894 * 111.00134 * 180.02562 * 23 22 20 36 36 H 1.00904 * 110.99913 * 303.95408 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0958 1.3194 -0.4116 5 6 3.2880 2.3009 0.5237 6 1 3.6401 2.0437 1.5118 7 6 3.0302 3.6263 0.2020 8 7 2.1618 3.9172 -0.7434 9 14 3.9159 4.9973 1.1106 10 1 5.3807 4.8579 0.9108 11 1 3.6038 4.9128 2.5600 12 1 3.4667 6.3111 0.5838 13 6 3.3778 1.5880 -1.8239 14 6 4.8355 1.2371 -2.1285 15 1 5.0171 0.1851 -1.9087 16 6 5.1447 1.5235 -3.6108 17 6 6.3082 2.5437 -3.5654 18 6 6.8845 2.3161 -2.1447 19 1 7.5529 1.4551 -2.1350 20 6 7.6027 3.5488 -1.6595 21 8 7.1778 4.1612 -0.7028 22 7 8.7174 3.9709 -2.2888 23 7 9.3681 5.0887 -1.8494 24 8 5.7115 2.0595 -1.3395 25 1 2.9717 -0.7548 -0.6965 26 1 2.9715 -0.2245 1.0026 27 1 1.6385 3.2118 -1.1549 28 1 2.7204 0.9822 -2.4473 29 1 3.2067 2.6438 -2.0341 30 1 5.4570 0.6111 -4.1186 31 1 4.2755 1.9579 -4.1048 32 1 7.0534 2.3180 -4.3283 33 1 5.9368 3.5625 -3.6764 34 1 9.0571 3.4814 -3.0542 35 1 10.1805 5.2804 -2.4161 36 1 8.7470 5.8836 -1.8276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104121323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = 3.798128 kcal Electronic energy + Delta-G solvation = -21292.434231 eV Core-core repulsion = 18006.928997 eV Total energy + Delta-G solvation = -3285.505235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98316 -38.40758 -36.41116 -35.48013 -34.83231 -31.85195 -31.41524 -30.74396 -28.76769 -26.54485 -25.39180 -22.96300 -21.46611 -20.58951 -20.30540 -18.12670 -17.67050 -16.95112 -16.43927 -16.18521 -15.36849 -14.93987 -14.75741 -14.11801 -14.06474 -13.91018 -13.34654 -13.22385 -12.91459 -12.60244 -12.10541 -11.81606 -11.68862 -11.53849 -11.29588 -11.10966 -10.88785 -10.70823 -10.45146 -10.34847 -10.19450 -9.83504 -9.52758 -9.25636 -9.04544 -8.28654 -8.14191 -6.95699 -5.97964 -3.32817 2.76809 2.89153 3.61218 3.69994 3.71365 3.85788 4.08974 4.27860 4.62177 4.76501 4.79166 4.99392 5.05807 5.08932 5.20183 5.35721 5.43087 5.57877 5.64761 5.79154 5.87200 6.04750 6.06026 6.17795 6.30737 6.35459 6.46280 6.54411 7.16637 7.35118 7.42424 7.65819 8.11308 8.51933 8.62658 8.65625 9.04619 9.83394 10.14363 11.24184 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.007461 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.104482 B = 3752.039273 C = 4729.847612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.199 3.801 3 C 0.221 3.779 4 N -0.569 5.569 5 C -0.343 4.343 6 H 0.057 0.943 7 C 0.003 3.997 8 N -0.905 5.905 9 Si 1.044 2.956 10 H -0.254 1.254 11 H -0.299 1.299 12 H -0.294 1.294 13 C 0.131 3.869 14 C 0.062 3.938 15 H 0.057 0.943 16 C -0.149 4.149 17 C -0.142 4.142 18 C 0.059 3.941 19 H 0.087 0.913 20 C 0.512 3.488 21 O -0.480 6.480 22 N -0.587 5.587 23 N -0.601 5.601 24 O -0.297 6.297 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.264 0.736 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.395 0.605 35 H 0.351 0.649 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.554 -4.178 -10.194 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.121 4.121 3 C 0.091 3.909 4 N -0.288 5.288 5 C -0.471 4.471 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.544 5.544 9 Si 0.872 3.128 10 H -0.179 1.179 11 H -0.226 1.226 12 H -0.220 1.220 13 C 0.005 3.995 14 C 0.002 3.998 15 H 0.075 0.925 16 C -0.187 4.187 17 C -0.180 4.180 18 C -0.005 4.005 19 H 0.104 0.896 20 C 0.296 3.704 21 O -0.349 6.349 22 N -0.336 5.336 23 N -0.228 5.228 24 O -0.214 6.214 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.164 0.836 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.801 -2.410 -8.472 16.372 hybrid contribution 0.265 -1.404 -1.680 2.205 sum 14.066 -3.814 -10.152 17.761 Atomic orbital electron populations 1.80958 1.14528 1.10590 1.10476 1.31879 0.97309 0.91286 0.91583 1.19028 0.79104 0.91165 1.01599 1.43982 1.71369 1.09478 1.03986 1.19744 1.43254 0.88005 0.96122 0.92525 1.25815 0.96183 0.98444 0.99581 1.70848 1.19774 1.35910 1.27901 0.83914 0.78996 0.75460 0.74427 1.17881 1.22636 1.22034 1.21376 0.89690 1.03644 0.84834 1.23566 0.94444 0.94011 0.87789 0.92521 1.22977 0.98689 0.98759 0.98321 1.23082 0.98222 1.01364 0.95353 1.22845 0.91762 0.94618 0.91264 0.89591 1.20386 0.79498 0.86640 0.83833 1.90877 1.63981 1.55330 1.24694 1.44690 1.29223 1.25209 1.34523 1.59966 1.07868 1.00992 1.53941 1.89457 1.26176 1.70497 1.35242 0.90136 0.89131 0.92499 0.93719 0.88855 0.91043 0.90170 0.90453 0.90206 0.76782 0.83562 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.44 18.54 42.16 0.78 -10.66 16 2 C 0.20 4.28 15.76 -20.76 -0.33 3.95 16 3 C 0.22 4.18 6.15 -6.83 -0.04 4.14 16 4 N -0.57 -13.16 2.16 -176.58 -0.38 -13.54 16 5 C -0.34 -9.35 8.83 -15.06 -0.13 -9.48 16 6 H 0.06 1.59 7.95 -52.49 -0.42 1.17 16 7 C 0.00 0.09 4.85 -17.43 -0.08 0.01 16 8 N -0.91 -27.34 12.18 55.49 0.68 -26.67 16 9 Si 1.04 27.35 29.99 -169.99 -5.10 22.25 16 10 H -0.25 -6.83 6.23 56.52 0.35 -6.47 16 11 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 13 C 0.13 2.75 4.33 -4.05 -0.02 2.73 16 14 C 0.06 1.07 3.68 -26.16 -0.10 0.98 16 15 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.15 -1.93 6.64 -25.20 -0.17 -2.10 16 17 C -0.14 -1.71 6.57 -24.72 -0.16 -1.87 16 18 C 0.06 0.87 3.76 -26.83 -0.10 0.77 16 19 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 20 C 0.51 8.51 7.28 -10.99 -0.08 8.43 16 21 O -0.48 -10.96 15.93 -13.48 -0.21 -11.17 16 22 N -0.59 -6.64 6.46 31.22 0.20 -6.44 16 23 N -0.60 -6.45 10.03 60.35 0.61 -5.84 16 24 O -0.30 -6.06 9.86 -54.26 -0.53 -6.60 16 25 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 26 H 0.09 1.61 8.05 -51.93 -0.42 1.19 16 27 H 0.26 8.03 7.12 -40.82 -0.29 7.74 16 28 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.09 2.34 5.32 -51.93 -0.28 2.06 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.10 8.05 -51.92 -0.42 0.68 16 34 H 0.40 2.80 8.83 -185.16 -1.63 1.17 16 35 H 0.35 2.20 9.21 -181.37 -1.67 0.53 16 36 H 0.35 3.93 9.00 -181.36 -1.63 2.30 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -38.25 313.37 -8.99 -47.24 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.53 Total: -0.84 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.21 Total: 7.55 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 1.88 Total: -63.15 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.75 Total: -17.77 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -5.10 Total: 22.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -38.25 -8.99 -47.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104121323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.035 kcal (2) G-P(sol) polarization free energy of solvation -38.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds