Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46969 * 162.66210 * 3 2 1 5 5 C 1.36937 * 119.99796 * 88.17891 * 4 3 2 6 6 H 1.07995 * 120.00080 * 35.20023 * 5 4 3 7 7 C 1.38807 * 119.99785 * 215.20381 * 5 4 3 8 8 N 1.31623 * 120.00564 * 25.87142 * 7 5 4 9 9 Si 1.86807 * 119.99915 * 205.87193 * 7 5 4 10 10 H 1.48491 * 109.47038 * 59.99835 * 9 7 5 11 11 H 1.48498 * 109.47049 * 300.00030 * 9 7 5 12 12 H 1.48503 * 109.47077 * 180.02562 * 9 7 5 13 13 C 1.46496 * 119.99982 * 268.17730 * 4 3 2 14 14 C 1.52994 * 109.47380 * 269.99876 * 13 4 3 15 15 H 1.09000 * 109.86943 * 59.30269 * 14 13 4 16 16 C 1.54100 * 109.88296 * 180.30628 * 14 13 4 17 17 C 1.54815 * 104.18639 * 121.45524 * 16 14 13 18 18 C 1.54994 * 102.09476 * 20.88274 * 17 16 14 19 19 H 1.09001 * 110.61842 * 81.62971 * 18 17 16 20 20 C 1.50693 * 110.61960 * 204.47537 * 18 17 16 21 21 O 1.21287 * 120.00316 * 115.00094 * 20 18 17 22 22 N 1.34781 * 120.00017 * 294.99940 * 20 18 17 23 23 N 1.36600 * 120.00003 * 179.97438 * 22 20 18 24 24 O 1.43744 * 109.88190 * 298.29749 * 14 13 4 25 25 H 1.09000 * 109.46869 * 42.66591 * 3 2 1 26 26 H 1.08997 * 109.47254 * 282.66588 * 3 2 1 27 27 H 0.97001 * 119.99518 * 5.98968 * 8 7 5 28 28 H 1.08994 * 109.47420 * 30.00301 * 13 4 3 29 29 H 1.09001 * 109.46780 * 149.99846 * 13 4 3 30 30 H 1.08993 * 110.49264 * 240.13170 * 16 14 13 31 31 H 1.09004 * 110.48724 * 2.78319 * 16 14 13 32 32 H 1.09003 * 110.90331 * 139.08345 * 17 16 14 33 33 H 1.09007 * 110.90676 * 262.65070 * 17 16 14 34 34 H 0.96998 * 120.00075 * 0.02562 * 22 20 18 35 35 H 1.00894 * 111.00134 * 180.02562 * 23 22 20 36 36 H 1.00904 * 110.99913 * 303.95408 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0958 1.3194 -0.4116 5 6 3.2880 2.3009 0.5237 6 1 3.6401 2.0437 1.5118 7 6 3.0302 3.6263 0.2020 8 7 2.1618 3.9172 -0.7434 9 14 3.9159 4.9973 1.1106 10 1 5.3807 4.8579 0.9108 11 1 3.6038 4.9128 2.5600 12 1 3.4667 6.3111 0.5838 13 6 3.3778 1.5880 -1.8239 14 6 4.8355 1.2371 -2.1285 15 1 5.0171 0.1851 -1.9087 16 6 5.1447 1.5235 -3.6108 17 6 6.3082 2.5437 -3.5654 18 6 6.8845 2.3161 -2.1447 19 1 7.5529 1.4551 -2.1350 20 6 7.6027 3.5488 -1.6595 21 8 7.1778 4.1612 -0.7028 22 7 8.7174 3.9709 -2.2888 23 7 9.3681 5.0887 -1.8494 24 8 5.7115 2.0595 -1.3395 25 1 2.9717 -0.7548 -0.6965 26 1 2.9715 -0.2245 1.0026 27 1 1.6385 3.2118 -1.1549 28 1 2.7204 0.9822 -2.4473 29 1 3.2067 2.6438 -2.0341 30 1 5.4570 0.6111 -4.1186 31 1 4.2755 1.9579 -4.1048 32 1 7.0534 2.3180 -4.3283 33 1 5.9368 3.5625 -3.6764 34 1 9.0571 3.4814 -3.0542 35 1 10.1805 5.2804 -2.4161 36 1 8.7470 5.8836 -1.8276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104121323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = -26.317561 kcal Electronic energy + Delta-G solvation = -21293.740146 eV Core-core repulsion = 18006.928997 eV Total energy + Delta-G solvation = -3286.811149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18046 -39.67301 -38.10656 -36.71762 -36.57809 -33.38854 -32.99920 -32.07016 -29.94278 -28.18431 -26.97209 -24.39542 -22.92152 -21.72046 -21.64610 -19.66011 -19.14490 -18.31940 -17.84819 -17.34128 -16.61553 -16.31777 -16.21784 -15.73251 -15.46584 -15.40648 -15.03069 -14.61724 -14.36800 -14.29306 -13.66851 -13.47998 -13.24415 -12.85432 -12.65319 -12.44112 -12.32080 -12.21087 -12.10343 -11.95173 -11.78753 -11.58275 -11.26621 -10.84971 -10.41761 -10.31938 -9.10068 -8.92114 -8.11938 -5.45528 1.55220 1.68154 1.72092 1.79560 1.87259 2.00411 2.02034 2.72024 3.16570 3.28416 3.52937 3.55571 3.74170 3.80626 4.08643 4.20005 4.28149 4.33034 4.48506 4.63831 4.69502 4.82292 4.89913 4.92778 4.94172 5.10632 5.27614 5.55247 5.71551 5.97840 6.28063 6.35382 6.48330 6.75920 6.81854 7.09996 7.62308 7.77711 8.12991 9.04831 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.007461 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.104482 B = 3752.039273 C = 4729.847612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.215 3.785 3 C 0.222 3.778 4 N -0.584 5.584 5 C -0.324 4.324 6 H 0.045 0.955 7 C -0.041 4.041 8 N -0.935 5.935 9 Si 1.079 2.921 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.306 1.306 13 C 0.128 3.872 14 C 0.063 3.937 15 H 0.082 0.918 16 C -0.142 4.142 17 C -0.132 4.132 18 C 0.055 3.945 19 H 0.127 0.873 20 C 0.504 3.496 21 O -0.558 6.558 22 N -0.560 5.560 23 N -0.616 5.616 24 O -0.352 6.352 25 H 0.134 0.866 26 H 0.107 0.893 27 H 0.252 0.748 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.051 0.949 34 H 0.421 0.579 35 H 0.377 0.623 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.878 -6.474 -12.008 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C -0.104 4.104 3 C 0.092 3.908 4 N -0.304 5.304 5 C -0.454 4.454 6 H 0.063 0.937 7 C -0.240 4.240 8 N -0.577 5.577 9 Si 0.907 3.093 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.233 1.233 13 C 0.002 3.998 14 C 0.003 3.997 15 H 0.100 0.900 16 C -0.180 4.180 17 C -0.169 4.169 18 C -0.008 4.008 19 H 0.144 0.856 20 C 0.289 3.711 21 O -0.433 6.433 22 N -0.309 5.309 23 N -0.246 5.246 24 O -0.271 6.271 25 H 0.152 0.848 26 H 0.125 0.875 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.262 0.738 35 H 0.194 0.806 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.202 -4.736 -10.353 19.802 hybrid contribution -0.326 -0.759 -1.142 1.409 sum 15.876 -5.495 -11.495 20.356 Atomic orbital electron populations 1.80973 1.15953 1.11794 1.12072 1.32368 0.97740 0.90039 0.90256 1.19426 0.77291 0.90051 1.03987 1.44103 1.72040 1.09970 1.04242 1.19761 1.40635 0.88848 0.96178 0.93710 1.26346 0.97005 1.00240 1.00394 1.70917 1.21567 1.35342 1.29882 0.83394 0.77529 0.73892 0.74520 1.19307 1.21276 1.23304 1.21406 0.93172 1.01310 0.83865 1.23497 0.91301 0.94670 0.90212 0.90032 1.22977 0.98660 1.00815 0.95522 1.23093 0.99059 0.99764 0.95021 1.23173 0.90873 0.94973 0.91763 0.85601 1.20923 0.80238 0.86818 0.83096 1.90842 1.66422 1.57781 1.28294 1.44370 1.27480 1.25003 1.34062 1.59843 1.08614 1.00680 1.55451 1.89386 1.28481 1.71373 1.37814 0.84822 0.87516 0.93755 0.91908 0.93356 0.86609 0.91306 0.85019 0.92968 0.73797 0.80641 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.56 18.54 20.01 0.37 -24.19 16 2 C 0.21 8.92 15.76 89.44 1.41 10.33 16 3 C 0.22 7.78 6.15 84.57 0.52 8.30 16 4 N -0.58 -26.44 2.16 -712.59 -1.54 -27.98 16 5 C -0.32 -17.83 8.83 84.03 0.74 -17.09 16 6 H 0.05 2.54 7.95 -2.91 -0.02 2.51 16 7 C -0.04 -2.44 4.85 84.86 0.41 -2.03 16 8 N -0.94 -58.48 12.18 21.65 0.26 -58.21 16 9 Si 1.08 57.98 29.99 68.60 2.06 60.04 16 10 H -0.27 -14.97 6.23 99.48 0.62 -14.35 16 11 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 12 H -0.31 -16.83 7.11 99.48 0.71 -16.12 16 13 C 0.13 5.26 4.33 86.38 0.37 5.64 16 14 C 0.06 2.00 3.68 30.96 0.11 2.11 16 15 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.14 -3.13 6.64 31.59 0.21 -2.92 16 17 C -0.13 -2.71 6.57 31.90 0.21 -2.50 16 18 C 0.05 1.48 3.76 30.53 0.11 1.60 16 19 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 20 C 0.50 16.29 7.28 87.65 0.64 16.93 16 21 O -0.56 -26.25 15.93 15.14 0.24 -26.01 16 22 N -0.56 -11.42 6.46 -173.53 -1.12 -12.54 16 23 N -0.62 -12.31 10.03 37.02 0.37 -11.94 16 24 O -0.35 -14.03 9.86 -130.79 -1.29 -15.32 16 25 H 0.13 3.32 8.06 -2.39 -0.02 3.30 16 26 H 0.11 3.47 8.05 -2.39 -0.02 3.45 16 27 H 0.25 15.90 7.12 -92.71 -0.66 15.24 16 28 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.05 2.49 5.32 -2.39 -0.01 2.47 16 30 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.69 7.70 -2.38 -0.02 1.67 16 32 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.37 8.05 -2.38 -0.02 1.35 16 34 H 0.42 4.30 8.83 -215.50 -1.90 2.40 16 35 H 0.38 3.82 9.21 -210.56 -1.94 1.88 16 36 H 0.34 7.69 9.00 -210.55 -1.90 5.79 16 Total: -1.00 -89.94 313.37 -0.48 -90.41 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.57 Total: 5.37 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 4.74 Total: 20.36 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -1.66 Total: -134.86 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.05 Total: -41.33 kcal Atomic # 14 Polarization: 57.98 SS G_CDS: 2.06 Total: 60.04 kcal Total: -89.94 -0.48 -90.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104121323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.097 kcal (2) G-P(sol) polarization free energy of solvation -89.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds