Wall clock time and date at job start Mon Mar 30 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86793 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47340 * 299.99737 * 3 2 1 6 6 H 1.48494 * 109.47398 * 59.99989 * 3 2 1 7 7 C 1.39586 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36125 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99834 * 180.02562 * 9 7 2 11 11 O 1.21501 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.48828 * 119.99870 * 180.02562 * 10 9 7 13 13 O 1.21442 * 120.00077 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00279 * 179.97438 * 12 10 9 15 15 C 1.48291 * 128.20966 * 359.96992 * 14 12 10 16 16 H 1.09004 * 112.20732 * 343.89687 * 15 14 12 17 17 C 1.54607 * 104.26219 * 221.64050 * 15 14 12 18 18 C 1.54307 * 104.75312 * 334.86047 * 17 15 14 19 19 C 1.48293 * 128.21237 * 179.97438 * 14 12 10 20 20 H 1.09000 * 112.20656 * 16.71402 * 19 14 12 21 21 C 1.53701 * 107.27862 * 252.56124 * 19 14 12 22 22 C 1.53153 * 108.87547 * 295.99297 * 21 19 14 23 23 O 1.42902 * 109.43195 * 293.82283 * 22 21 19 24 24 C 1.53143 * 109.68808 * 53.88635 * 22 21 19 25 25 H 0.96995 * 120.00076 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99755 * 0.02562 * 9 7 2 27 27 H 1.09002 * 110.38219 * 216.03915 * 17 15 14 28 28 H 1.09009 * 110.38051 * 93.67804 * 17 15 14 29 29 H 1.08994 * 110.38264 * 241.18664 * 18 17 15 30 30 H 1.08994 * 110.38366 * 118.81300 * 18 17 15 31 31 H 1.08999 * 109.56779 * 55.80427 * 21 19 14 32 32 H 1.08999 * 109.57248 * 176.17524 * 21 19 14 33 33 H 1.08992 * 109.39885 * 173.93455 * 22 21 19 34 34 H 0.96698 * 114.00209 * 300.21989 * 23 22 21 35 35 H 1.09007 * 109.57015 * 186.28649 * 24 22 21 36 36 H 1.09005 * 109.56490 * 65.93286 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3964 1.2124 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0014 -3.5549 -0.0005 11 8 3.2165 -3.5549 -0.0010 12 6 1.2573 -4.8438 -0.0011 13 8 0.0429 -4.8438 -0.0011 14 7 1.9312 -6.0110 -0.0016 15 6 3.3989 -6.2228 -0.0023 16 1 3.9450 -5.3219 -0.2823 17 6 3.6155 -7.3853 -0.9983 18 6 2.2792 -8.1569 -0.9983 19 6 1.3808 -7.3880 -0.0017 20 1 0.3303 -7.4117 -0.2916 21 6 1.6203 -7.9755 1.3982 22 6 3.1289 -8.0839 1.6386 23 8 3.6850 -9.0480 0.7423 24 6 3.7890 -6.7233 1.3970 25 1 -0.4850 0.8400 -0.0004 26 1 0.3575 -2.3877 -0.0005 27 1 4.4262 -8.0300 -0.6587 28 1 3.8297 -6.9971 -1.9941 29 1 2.4323 -9.1812 -0.6586 30 1 1.8359 -8.1484 -1.9939 31 1 1.1771 -7.3216 2.1493 32 1 1.1685 -8.9654 1.4610 33 1 3.3101 -8.3976 2.6666 34 1 3.3130 -9.9354 0.8388 35 1 4.8723 -6.8269 1.4590 36 1 3.4449 -6.0122 2.1481 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104267729.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:25 Heat of formation + Delta-G solvation = -95.830095 kcal Electronic energy + Delta-G solvation = -21509.762462 eV Core-core repulsion = 18187.644272 eV Total energy + Delta-G solvation = -3322.118190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99123 -38.76380 -36.97742 -35.77570 -34.21609 -31.53722 -31.27956 -31.15583 -30.78336 -25.97576 -24.15723 -24.01478 -22.32307 -20.44009 -20.24664 -18.67998 -18.02713 -17.39348 -16.60657 -16.11403 -15.25119 -14.79591 -14.67067 -14.18703 -13.97881 -13.66151 -13.52717 -13.19621 -12.87185 -12.71508 -12.43621 -12.25678 -12.08025 -11.76684 -11.69834 -11.21497 -10.98682 -10.80126 -10.47645 -10.40063 -10.27870 -10.10228 -9.92734 -9.72525 -9.53129 -8.30640 -8.21749 -8.04540 -6.66353 -3.98893 2.46924 3.14180 3.14773 3.20839 3.31235 4.05090 4.15033 4.29677 4.60590 4.75020 4.93413 4.96406 5.18151 5.20267 5.21959 5.30128 5.39075 5.51188 5.76045 5.77735 5.94457 5.96607 6.09333 6.14202 6.17029 6.30852 6.44409 6.47710 6.53108 6.86807 7.31923 7.55198 7.76189 8.00707 8.32705 8.62687 8.97407 9.33228 9.86314 10.48695 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039209 B = 0.004923 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.941445 B = 5686.648747 C = 5978.350494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.400 3.600 11 O -0.590 6.590 12 C 0.532 3.468 13 O -0.551 6.551 14 N -0.598 5.598 15 C 0.121 3.879 16 H 0.138 0.862 17 C -0.123 4.123 18 C -0.123 4.123 19 C 0.131 3.869 20 H 0.094 0.906 21 C -0.159 4.159 22 C 0.107 3.893 23 O -0.550 6.550 24 C -0.120 4.120 25 H 0.280 0.720 26 H 0.404 0.596 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.364 0.636 35 H 0.079 0.921 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -15.679 1.832 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.435 4.435 8 H 0.131 0.869 9 N -0.134 5.134 10 C 0.184 3.816 11 O -0.479 6.479 12 C 0.319 3.681 13 O -0.429 6.429 14 N -0.333 5.333 15 C 0.018 3.982 16 H 0.155 0.845 17 C -0.161 4.161 18 C -0.161 4.161 19 C 0.027 3.973 20 H 0.112 0.888 21 C -0.198 4.198 22 C 0.049 3.951 23 O -0.357 6.357 24 C -0.158 4.158 25 H 0.090 0.910 26 H 0.240 0.760 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.212 0.788 35 H 0.097 0.903 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.825 -14.875 1.649 15.724 hybrid contribution -0.758 0.323 0.315 0.882 sum 4.067 -14.552 1.964 15.236 Atomic orbital electron populations 1.69494 1.06535 1.29226 1.45511 1.25586 0.95616 1.00464 0.95954 0.85669 0.79860 0.80040 0.78046 1.18716 1.20300 1.20322 1.19923 0.93970 0.81815 1.47838 0.86904 1.41566 1.10469 1.04166 1.57191 1.18883 0.87778 0.84044 0.90876 1.90444 1.12892 1.85967 1.58609 1.20409 0.86921 0.84596 0.76130 1.90684 1.13978 1.87474 1.50720 1.48947 1.08199 1.04021 1.72085 1.22800 0.81100 1.00106 0.94144 0.84495 1.22723 0.98583 0.96342 0.98441 1.22739 0.95299 1.00202 0.97866 1.22177 0.98840 0.81679 0.94579 0.88780 1.22718 0.97241 1.01422 0.98407 1.21787 0.91679 0.89830 0.91844 1.86818 1.67308 1.21217 1.60343 1.22092 1.00942 0.94023 0.98731 0.90992 0.76037 0.88119 0.92674 0.89131 0.92884 0.90734 0.90916 0.92960 0.78819 0.90275 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.49 13.03 55.53 0.72 -22.77 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 20.14 29.56 -169.99 -5.02 15.11 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.30 -8.42 9.67 -15.14 -0.15 -8.57 16 8 H 0.11 3.17 7.15 -52.48 -0.38 2.80 16 9 N -0.50 -13.55 5.25 -11.59 -0.06 -13.61 16 10 C 0.40 10.23 7.80 -11.88 -0.09 10.14 16 11 O -0.59 -15.54 13.34 5.36 0.07 -15.47 16 12 C 0.53 12.23 7.97 -11.88 -0.09 12.13 16 13 O -0.55 -13.61 16.79 5.42 0.09 -13.52 16 14 N -0.60 -11.14 2.76 -153.93 -0.42 -11.57 16 15 C 0.12 2.01 3.74 -65.76 -0.25 1.77 16 16 H 0.14 2.69 5.42 -51.93 -0.28 2.41 16 17 C -0.12 -1.68 5.93 -25.20 -0.15 -1.83 16 18 C -0.12 -1.51 5.93 -25.18 -0.15 -1.66 16 19 C 0.13 1.92 4.13 -65.71 -0.27 1.65 16 20 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 21 C -0.16 -1.87 5.48 -26.29 -0.14 -2.02 16 22 C 0.11 1.17 3.77 -26.58 -0.10 1.07 16 23 O -0.55 -5.06 7.49 -35.23 -0.26 -5.32 16 24 C -0.12 -1.67 5.51 -26.32 -0.14 -1.81 16 25 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 26 H 0.40 11.12 7.35 -40.82 -0.30 10.82 16 27 H 0.10 1.26 5.79 -51.93 -0.30 0.96 16 28 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.09 0.86 5.47 -51.93 -0.28 0.58 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.36 1.90 8.54 45.56 0.39 2.29 16 35 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 287.91 15.07 4.34 4.34 Total: -1.00 -31.07 287.91 -5.84 -36.91 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -3.66 Total: 14.31 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -1.63 Total: 11.58 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.24 Total: -47.94 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.10 Total: -34.31 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.07 -5.84 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104267729.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.922 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds