Wall clock time and date at job start Mon Mar 30 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86793 * 119.99909 * 2 1 4 4 H 1.48505 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47340 * 299.99737 * 3 2 1 6 6 H 1.48494 * 109.47398 * 59.99989 * 3 2 1 7 7 C 1.39586 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36125 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99834 * 180.02562 * 9 7 2 11 11 O 1.21501 * 120.00271 * 359.97438 * 10 9 7 12 12 C 1.48828 * 119.99870 * 180.02562 * 10 9 7 13 13 O 1.21442 * 120.00077 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00279 * 179.97438 * 12 10 9 15 15 C 1.48291 * 128.20966 * 359.96992 * 14 12 10 16 16 H 1.09004 * 112.20732 * 343.89687 * 15 14 12 17 17 C 1.54607 * 104.26219 * 221.64050 * 15 14 12 18 18 C 1.54307 * 104.75312 * 334.86047 * 17 15 14 19 19 C 1.48293 * 128.21237 * 179.97438 * 14 12 10 20 20 H 1.09000 * 112.20656 * 16.71402 * 19 14 12 21 21 C 1.53701 * 107.27862 * 252.56124 * 19 14 12 22 22 C 1.53153 * 108.87547 * 295.99297 * 21 19 14 23 23 O 1.42902 * 109.43195 * 293.82283 * 22 21 19 24 24 C 1.53143 * 109.68808 * 53.88635 * 22 21 19 25 25 H 0.96995 * 120.00076 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99755 * 0.02562 * 9 7 2 27 27 H 1.09002 * 110.38219 * 216.03915 * 17 15 14 28 28 H 1.09009 * 110.38051 * 93.67804 * 17 15 14 29 29 H 1.08994 * 110.38264 * 241.18664 * 18 17 15 30 30 H 1.08994 * 110.38366 * 118.81300 * 18 17 15 31 31 H 1.08999 * 109.56779 * 55.80427 * 21 19 14 32 32 H 1.08999 * 109.57248 * 176.17524 * 21 19 14 33 33 H 1.08992 * 109.39885 * 173.93455 * 22 21 19 34 34 H 0.96698 * 114.00209 * 300.21989 * 23 22 21 35 35 H 1.09007 * 109.57015 * 186.28649 * 24 22 21 36 36 H 1.09005 * 109.56490 * 65.93286 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3964 1.2124 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0014 -3.5549 -0.0005 11 8 3.2165 -3.5549 -0.0010 12 6 1.2573 -4.8438 -0.0011 13 8 0.0429 -4.8438 -0.0011 14 7 1.9312 -6.0110 -0.0016 15 6 3.3989 -6.2228 -0.0023 16 1 3.9450 -5.3219 -0.2823 17 6 3.6155 -7.3853 -0.9983 18 6 2.2792 -8.1569 -0.9983 19 6 1.3808 -7.3880 -0.0017 20 1 0.3303 -7.4117 -0.2916 21 6 1.6203 -7.9755 1.3982 22 6 3.1289 -8.0839 1.6386 23 8 3.6850 -9.0480 0.7423 24 6 3.7890 -6.7233 1.3970 25 1 -0.4850 0.8400 -0.0004 26 1 0.3575 -2.3877 -0.0005 27 1 4.4262 -8.0300 -0.6587 28 1 3.8297 -6.9971 -1.9941 29 1 2.4323 -9.1812 -0.6586 30 1 1.8359 -8.1484 -1.9939 31 1 1.1771 -7.3216 2.1493 32 1 1.1685 -8.9654 1.4610 33 1 3.3101 -8.3976 2.6666 34 1 3.3130 -9.9354 0.8388 35 1 4.8723 -6.8269 1.4590 36 1 3.4449 -6.0122 2.1481 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104267729.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:24 Heat of formation + Delta-G solvation = -119.961666 kcal Electronic energy + Delta-G solvation = -21510.808885 eV Core-core repulsion = 18187.644272 eV Total energy + Delta-G solvation = -3323.164613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27313 -40.53039 -38.85219 -36.90301 -36.17784 -33.53892 -32.42277 -32.32365 -32.09128 -27.95907 -25.72807 -25.13170 -23.73328 -21.78097 -21.59148 -20.51264 -19.67038 -18.37612 -18.20393 -17.91989 -16.88590 -16.46963 -16.19268 -15.76626 -15.33978 -15.14138 -14.83346 -14.53032 -14.39772 -14.09823 -13.77411 -13.62788 -13.54830 -13.25895 -12.98891 -12.72332 -12.58061 -12.28028 -12.09923 -11.94662 -11.76792 -11.68821 -11.28199 -11.06563 -10.40624 -10.29477 -10.05343 -9.65998 -8.67502 -6.12678 0.57729 1.38935 1.44306 1.54419 1.69353 2.26078 2.34180 3.05351 3.12925 3.37500 3.63979 3.74357 3.93267 3.94612 4.08474 4.17698 4.20843 4.37702 4.39831 4.64396 4.77951 4.95259 5.00334 5.06893 5.15857 5.20318 5.22235 5.23912 5.28724 5.43784 5.63975 5.68139 6.27532 6.39154 6.74788 6.95801 7.06821 7.26513 7.78563 8.48917 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039209 B = 0.004923 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.941445 B = 5686.648747 C = 5978.350494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.006 4.006 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.343 4.343 8 H 0.099 0.901 9 N -0.513 5.513 10 C 0.394 3.606 11 O -0.603 6.603 12 C 0.528 3.472 13 O -0.578 6.578 14 N -0.592 5.592 15 C 0.107 3.893 16 H 0.098 0.902 17 C -0.113 4.113 18 C -0.112 4.112 19 C 0.117 3.883 20 H 0.082 0.918 21 C -0.153 4.153 22 C 0.123 3.877 23 O -0.553 6.553 24 C -0.120 4.120 25 H 0.289 0.711 26 H 0.399 0.601 27 H 0.123 0.877 28 H 0.044 0.956 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.389 0.611 35 H 0.093 0.907 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -17.933 2.250 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.210 4.210 3 Si 0.833 3.167 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.117 0.883 9 N -0.147 5.147 10 C 0.179 3.821 11 O -0.493 6.493 12 C 0.314 3.686 13 O -0.459 6.459 14 N -0.324 5.324 15 C 0.004 3.996 16 H 0.116 0.884 17 C -0.151 4.151 18 C -0.149 4.149 19 C 0.015 3.985 20 H 0.101 0.899 21 C -0.192 4.192 22 C 0.064 3.936 23 O -0.363 6.363 24 C -0.158 4.158 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.141 0.859 28 H 0.062 0.938 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.241 0.759 35 H 0.111 0.889 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.739 -17.203 2.065 18.253 hybrid contribution -0.992 0.892 0.165 1.344 sum 4.748 -16.312 2.230 17.135 Atomic orbital electron populations 1.69565 1.07915 1.30744 1.45403 1.26571 0.96501 1.03523 0.94384 0.84614 0.78233 0.75132 0.78746 1.18721 1.19051 1.19003 1.20015 0.93643 0.82948 1.50693 0.88286 1.41671 1.10118 1.04775 1.58133 1.19530 0.87939 0.84985 0.89679 1.90436 1.13512 1.86656 1.58665 1.19863 0.86513 0.85082 0.77149 1.90653 1.14609 1.87902 1.52747 1.49094 1.09590 1.04487 1.69274 1.22929 0.79331 1.00049 0.97244 0.88393 1.22702 1.00193 0.95349 0.96855 1.22801 0.93331 1.01608 0.97186 1.22639 0.98765 0.79373 0.97758 0.89935 1.22741 0.98335 1.02873 0.95211 1.21508 0.90230 0.88440 0.93444 1.86709 1.67274 1.22510 1.59852 1.22050 1.02136 0.95810 0.95797 0.90117 0.76706 0.85888 0.93766 0.84910 0.93163 0.92918 0.86560 0.90322 0.75876 0.88891 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.52 13.03 21.77 0.28 -49.24 16 2 C -0.01 -0.31 5.51 85.14 0.47 0.15 16 3 Si 1.01 41.56 29.56 68.60 2.03 43.59 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.34 -19.82 9.67 84.35 0.82 -19.01 16 8 H 0.10 5.85 7.15 -2.91 -0.02 5.83 16 9 N -0.51 -29.41 5.25 -308.87 -1.62 -31.03 16 10 C 0.39 21.33 7.80 87.08 0.68 22.01 16 11 O -0.60 -33.60 13.34 -3.72 -0.05 -33.65 16 12 C 0.53 25.42 7.97 87.08 0.69 26.11 16 13 O -0.58 -29.86 16.79 -3.53 -0.06 -29.92 16 14 N -0.59 -22.41 2.76 -759.25 -2.09 -24.50 16 15 C 0.11 3.55 3.74 45.41 0.17 3.72 16 16 H 0.10 4.05 5.42 -2.39 -0.01 4.03 16 17 C -0.11 -2.86 5.93 31.58 0.19 -2.67 16 18 C -0.11 -2.38 5.93 31.60 0.19 -2.19 16 19 C 0.12 3.23 4.13 45.44 0.19 3.41 16 20 H 0.08 2.49 7.93 -2.39 -0.02 2.47 16 21 C -0.15 -3.11 5.48 30.88 0.17 -2.94 16 22 C 0.12 2.19 3.77 30.69 0.12 2.31 16 23 O -0.55 -7.06 7.49 -148.98 -1.12 -8.18 16 24 C -0.12 -3.19 5.51 30.86 0.17 -3.02 16 25 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 26 H 0.40 23.26 7.35 -92.71 -0.68 22.57 16 27 H 0.12 2.61 5.79 -2.39 -0.01 2.60 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.13 1.75 5.47 -2.39 -0.01 1.73 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.39 1.31 8.54 -74.06 -0.63 0.67 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -71.79 287.91 1.04 -70.75 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.18 Total: 34.29 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 3.84 Total: 27.89 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.43 Total: -104.76 kcal Atomic # 8 Polarization: -70.52 SS G_CDS: -1.23 Total: -71.75 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -71.79 1.04 -70.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104267729.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.214 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds