Wall clock time and date at job start Mon Mar 30 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50703 * 109.46998 * 239.99618 * 2 1 3 5 5 H 1.07993 * 120.00092 * 240.00040 * 4 2 1 6 6 C 1.37882 * 119.99754 * 60.00278 * 4 2 1 7 7 N 1.31513 * 119.99870 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47315 * 90.00134 * 8 6 4 10 10 H 1.48506 * 109.47323 * 210.00240 * 8 6 4 11 11 H 1.48499 * 109.47326 * 330.00075 * 8 6 4 12 12 N 1.46901 * 109.47017 * 119.99947 * 2 1 3 13 13 C 1.46904 * 110.99937 * 58.95296 * 12 2 1 14 14 C 1.46901 * 111.00049 * 295.00071 * 12 2 1 15 15 C 1.50695 * 109.47325 * 190.00189 * 14 12 2 16 16 C 1.35315 * 126.66709 * 90.27831 * 15 14 12 17 17 C 1.42270 * 103.92335 * 180.15273 * 16 15 14 18 18 C 1.48326 * 126.94185 * 179.88771 * 17 16 15 19 19 O 1.21494 * 119.99985 * 359.71397 * 18 17 16 20 20 N 1.34784 * 120.00252 * 179.71394 * 18 17 16 21 21 N 1.36595 * 119.99959 * 179.72785 * 20 18 17 22 22 N 1.30992 * 106.12221 * 359.63321 * 17 16 15 23 23 O 1.20902 * 111.43747 * 0.23680 * 22 17 16 24 24 H 1.09000 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47210 * 300.00331 * 1 2 3 26 26 H 1.08999 * 109.46952 * 60.00322 * 1 2 3 27 27 H 0.97002 * 119.99537 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47021 * 296.04220 * 13 12 2 29 29 H 1.08995 * 109.47175 * 56.04962 * 13 12 2 30 30 H 1.09000 * 109.47060 * 176.04721 * 13 12 2 31 31 H 1.08999 * 109.47315 * 69.99916 * 14 12 2 32 32 H 1.09001 * 109.46891 * 310.00242 * 14 12 2 33 33 H 1.08002 * 128.04102 * 0.03166 * 16 15 14 34 34 H 0.97000 * 119.99339 * 0.02562 * 20 18 17 35 35 H 1.00898 * 110.99920 * 179.97438 * 21 20 18 36 36 H 1.00907 * 111.00191 * 303.95309 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3678 -0.5570 3.6006 16 6 3.5789 -0.1893 4.0792 17 6 3.7884 -1.0592 5.1853 18 6 4.9705 -1.0942 6.0805 19 8 5.8937 -0.3258 5.8979 20 7 5.0206 -1.9785 7.0965 21 7 6.1118 -2.0144 7.9174 22 7 2.7240 -1.8194 5.2569 23 8 1.9302 -1.5514 4.3853 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1612 -3.4844 28 1 0.4419 -2.0730 1.3348 29 1 1.8167 -2.5950 0.3319 30 1 1.9616 -2.5869 2.1059 31 1 0.5722 -0.0345 2.5726 32 1 1.9297 1.0870 2.3124 33 1 4.2351 0.5835 3.7068 34 1 4.2837 -2.5922 7.2419 35 1 6.0064 -2.7230 8.6280 36 1 6.9586 -2.1565 7.3874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110583618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:54 Heat of formation + Delta-G solvation = 65.364231 kcal Electronic energy + Delta-G solvation = -20247.826263 eV Core-core repulsion = 16964.990734 eV Total energy + Delta-G solvation = -3282.835528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.98614 -39.88006 -37.49583 -36.09031 -34.02049 -33.32832 -31.88483 -29.60552 -28.71593 -27.13274 -25.25526 -24.40829 -23.94191 -22.44633 -20.71282 -19.57045 -18.29830 -17.71784 -17.11615 -16.99715 -16.17751 -15.66261 -15.25494 -14.88018 -14.44225 -14.32271 -13.98364 -13.82941 -13.35734 -12.70373 -12.42614 -11.92580 -11.63528 -11.48394 -11.19899 -11.16228 -10.88873 -10.75807 -10.58197 -10.53824 -10.44791 -10.11358 -10.02110 -9.37536 -8.96101 -8.58069 -8.45997 -7.38522 -6.08134 -4.12227 1.06192 1.78969 2.37234 3.02653 3.06032 3.27707 3.34972 3.39030 3.79556 4.36246 4.46552 4.66883 4.97308 5.07617 5.21317 5.24636 5.42595 5.82214 5.86852 6.04176 6.07358 6.16083 6.27888 6.56300 6.72099 6.79848 6.83959 6.97711 7.09761 7.30638 7.59959 7.72115 7.94414 7.98919 8.10978 8.23857 8.43362 8.92738 9.53152 10.98966 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033876 B = 0.003785 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.352245 B = 7395.535968 C = 7711.997846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.212 3.788 3 H 0.044 0.956 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.126 3.874 15 C 0.005 3.995 16 C -0.172 4.172 17 C -0.026 4.026 18 C 0.606 3.394 19 O -0.508 6.508 20 N -0.567 5.567 21 N -0.599 5.599 22 N -0.346 5.346 23 O 0.118 5.882 24 H 0.033 0.967 25 H 0.009 0.991 26 H 0.091 0.909 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.182 0.818 34 H 0.408 0.592 35 H 0.360 0.640 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -5.495 15.903 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.107 3.893 3 H 0.062 0.938 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.254 5.254 13 C -0.118 4.118 14 C -0.004 4.004 15 C -0.058 4.058 16 C -0.196 4.196 17 C -0.186 4.186 18 C 0.390 3.610 19 O -0.379 6.379 20 N -0.313 5.313 21 N -0.226 5.226 22 N -0.048 5.048 23 O 0.044 5.956 24 H 0.052 0.948 25 H 0.028 0.972 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.199 0.801 34 H 0.246 0.754 35 H 0.174 0.826 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.382 -5.070 16.636 17.717 hybrid contribution -0.329 -1.244 -1.342 1.859 sum 3.052 -6.314 15.293 16.824 Atomic orbital electron populations 1.22449 1.00500 0.99687 1.00845 1.19373 0.89978 0.94729 0.85264 0.93777 1.21073 1.30912 1.12661 0.89474 0.91809 1.24909 0.95133 0.95080 0.99024 1.69872 1.36850 1.22916 1.23585 0.86504 0.79275 0.79274 0.82416 1.20791 1.21243 1.19816 1.62474 1.59594 1.02307 1.01036 1.22300 0.97244 0.90596 1.01624 1.20680 0.96640 0.97858 0.85187 1.24784 0.95497 0.90018 0.95539 1.22358 0.97402 1.03780 0.96086 1.23136 0.95917 0.99178 1.00403 1.16650 0.84895 0.80546 0.78927 1.90816 1.36725 1.39133 1.71272 1.44489 1.17603 1.38345 1.30861 1.59901 0.97186 1.55302 1.10244 1.74083 1.01137 1.20525 1.09090 1.84744 1.38159 1.42310 1.30383 0.94840 0.97159 0.89068 0.92884 0.95794 0.90164 0.94175 0.92583 0.87522 0.80082 0.75386 0.82610 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.90 8.27 37.16 0.31 -3.59 16 2 C 0.21 4.92 2.34 -68.86 -0.16 4.76 16 3 H 0.04 1.11 8.03 -51.93 -0.42 0.70 16 4 C -0.50 -13.04 7.88 -34.44 -0.27 -13.31 16 5 H 0.06 1.67 6.77 -52.49 -0.36 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 12 N -0.53 -10.43 4.73 -237.73 -1.13 -11.56 16 13 C 0.03 0.57 8.60 60.07 0.52 1.09 16 14 C 0.13 2.01 4.96 -4.98 -0.02 1.98 16 15 C 0.01 0.08 6.03 -35.35 -0.21 -0.14 16 16 C -0.17 -2.56 10.92 -39.08 -0.43 -2.99 16 17 C -0.03 -0.38 7.19 -82.53 -0.59 -0.98 16 18 C 0.61 8.60 7.92 -12.11 -0.10 8.50 16 19 O -0.51 -8.72 17.17 5.37 0.09 -8.63 16 20 N -0.57 -5.90 6.47 30.64 0.20 -5.70 16 21 N -0.60 -5.04 10.03 60.35 0.61 -4.44 16 22 N -0.35 -4.89 11.84 33.29 0.39 -4.50 16 23 O 0.12 1.74 10.60 17.24 0.18 1.92 16 24 H 0.03 0.72 6.48 -51.93 -0.34 0.39 16 25 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 26 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.02 0.43 6.51 -51.93 -0.34 0.09 16 29 H 0.08 1.60 6.41 -51.93 -0.33 1.27 16 30 H 0.04 0.67 6.83 -51.93 -0.35 0.32 16 31 H 0.06 0.86 6.94 -51.93 -0.36 0.50 16 32 H 0.11 1.60 8.00 -51.93 -0.42 1.18 16 33 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 34 H 0.41 3.40 8.59 -185.16 -1.59 1.81 16 35 H 0.36 1.63 9.21 -181.37 -1.67 -0.04 16 36 H 0.35 2.81 9.01 -181.36 -1.63 1.18 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -30.04 304.41 -8.54 -38.58 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.03 Total: 0.99 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.06 Total: -3.20 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.70 Total: -49.91 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.28 Total: -6.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.04 -8.54 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110583618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.942 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds