Wall clock time and date at job start Mon Mar 30 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50703 * 109.46998 * 239.99618 * 2 1 3 5 5 H 1.07993 * 120.00092 * 240.00040 * 4 2 1 6 6 C 1.37882 * 119.99754 * 60.00278 * 4 2 1 7 7 N 1.31513 * 119.99870 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47315 * 90.00134 * 8 6 4 10 10 H 1.48506 * 109.47323 * 210.00240 * 8 6 4 11 11 H 1.48499 * 109.47326 * 330.00075 * 8 6 4 12 12 N 1.46901 * 109.47017 * 119.99947 * 2 1 3 13 13 C 1.46904 * 110.99937 * 58.95296 * 12 2 1 14 14 C 1.46901 * 111.00049 * 295.00071 * 12 2 1 15 15 C 1.50695 * 109.47325 * 190.00189 * 14 12 2 16 16 C 1.35315 * 126.66709 * 90.27831 * 15 14 12 17 17 C 1.42270 * 103.92335 * 180.15273 * 16 15 14 18 18 C 1.48326 * 126.94185 * 179.88771 * 17 16 15 19 19 O 1.21494 * 119.99985 * 359.71397 * 18 17 16 20 20 N 1.34784 * 120.00252 * 179.71394 * 18 17 16 21 21 N 1.36595 * 119.99959 * 179.72785 * 20 18 17 22 22 N 1.30992 * 106.12221 * 359.63321 * 17 16 15 23 23 O 1.20902 * 111.43747 * 0.23680 * 22 17 16 24 24 H 1.09000 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47210 * 300.00331 * 1 2 3 26 26 H 1.08999 * 109.46952 * 60.00322 * 1 2 3 27 27 H 0.97002 * 119.99537 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47021 * 296.04220 * 13 12 2 29 29 H 1.08995 * 109.47175 * 56.04962 * 13 12 2 30 30 H 1.09000 * 109.47060 * 176.04721 * 13 12 2 31 31 H 1.08999 * 109.47315 * 69.99916 * 14 12 2 32 32 H 1.09001 * 109.46891 * 310.00242 * 14 12 2 33 33 H 1.08002 * 128.04102 * 0.03166 * 16 15 14 34 34 H 0.97000 * 119.99339 * 0.02562 * 20 18 17 35 35 H 1.00898 * 110.99920 * 179.97438 * 21 20 18 36 36 H 1.00907 * 111.00191 * 303.95309 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3678 -0.5570 3.6006 16 6 3.5789 -0.1893 4.0792 17 6 3.7884 -1.0592 5.1853 18 6 4.9705 -1.0942 6.0805 19 8 5.8937 -0.3258 5.8979 20 7 5.0206 -1.9785 7.0965 21 7 6.1118 -2.0144 7.9174 22 7 2.7240 -1.8194 5.2569 23 8 1.9302 -1.5514 4.3853 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1612 -3.4844 28 1 0.4419 -2.0730 1.3348 29 1 1.8167 -2.5950 0.3319 30 1 1.9616 -2.5869 2.1059 31 1 0.5722 -0.0345 2.5726 32 1 1.9297 1.0870 2.3124 33 1 4.2351 0.5835 3.7068 34 1 4.2837 -2.5922 7.2419 35 1 6.0064 -2.7230 8.6280 36 1 6.9586 -2.1565 7.3874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110583618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:53 Heat of formation + Delta-G solvation = 42.140155 kcal Electronic energy + Delta-G solvation = -20248.833334 eV Core-core repulsion = 16964.990734 eV Total energy + Delta-G solvation = -3283.842600 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -46.13875 -40.90946 -39.08050 -37.03486 -35.24996 -34.97202 -33.36806 -30.63746 -30.30022 -28.52986 -27.15215 -25.61815 -25.34783 -23.64877 -21.80815 -21.19226 -19.31866 -18.88868 -18.29992 -18.15117 -17.86994 -16.95424 -16.61681 -16.11080 -15.97937 -15.58683 -15.32276 -15.12558 -14.70203 -14.38390 -13.85594 -13.53817 -13.02663 -12.86563 -12.73096 -12.60956 -12.50699 -12.48611 -12.18083 -11.97199 -11.80420 -11.67805 -11.60669 -10.92639 -10.53474 -10.45731 -9.37885 -8.94072 -8.08138 -6.17638 -0.07711 0.61053 1.44651 1.46660 1.47197 1.56267 1.85375 1.93920 2.46221 2.72227 3.22253 3.34713 3.49176 3.90540 3.97452 4.10897 4.20891 4.53280 4.56421 4.64474 4.78917 4.84654 4.90770 4.98195 5.16604 5.21564 5.45380 5.57809 5.73939 5.82620 5.96155 6.17948 6.33671 6.44173 6.66037 6.87044 6.94289 7.17334 7.51139 8.97630 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033876 B = 0.003785 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.352245 B = 7395.535968 C = 7711.997846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.217 3.783 3 H 0.020 0.980 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.542 5.542 13 C 0.037 3.963 14 C 0.129 3.871 15 C 0.005 3.995 16 C -0.177 4.177 17 C -0.028 4.028 18 C 0.601 3.399 19 O -0.546 6.546 20 N -0.548 5.548 21 N -0.606 5.606 22 N -0.337 5.337 23 O 0.117 5.883 24 H 0.033 0.967 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.186 0.814 34 H 0.419 0.581 35 H 0.382 0.618 36 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -6.501 17.144 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.111 3.889 3 H 0.038 0.962 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.266 5.266 13 C -0.111 4.111 14 C 0.000 4.000 15 C -0.058 4.058 16 C -0.201 4.201 17 C -0.189 4.189 18 C 0.384 3.616 19 O -0.421 6.421 20 N -0.293 5.293 21 N -0.237 5.237 22 N -0.039 5.039 23 O 0.043 5.957 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.203 0.797 34 H 0.260 0.740 35 H 0.200 0.800 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.426 -6.135 17.927 19.255 hybrid contribution -0.318 -0.973 -1.587 1.889 sum 3.108 -7.108 16.340 18.088 Atomic orbital electron populations 1.22255 0.99749 0.99577 1.00687 1.19101 0.90390 0.93367 0.86060 0.96220 1.21370 1.30623 1.12489 0.90898 0.92600 1.25581 0.95455 0.95763 1.01537 1.69987 1.37776 1.23978 1.23980 0.85627 0.78739 0.78284 0.79380 1.20278 1.21174 1.19723 1.62293 1.60098 1.02872 1.01343 1.22226 0.97665 0.89870 1.01333 1.20658 0.97531 0.97938 0.83865 1.24481 0.95447 0.90385 0.95470 1.22521 0.97405 1.03943 0.96238 1.23235 0.96146 0.99032 1.00441 1.16641 0.84378 0.80925 0.79639 1.90797 1.37863 1.40904 1.72492 1.44326 1.18402 1.37016 1.29559 1.59832 0.96718 1.56823 1.10346 1.74074 1.00880 1.20159 1.08811 1.84738 1.38272 1.42208 1.30457 0.94785 0.94517 0.91943 0.92989 0.95167 0.92153 0.92448 0.91301 0.86696 0.79689 0.74011 0.80011 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.15 8.27 71.98 0.60 -6.56 16 2 C 0.22 10.06 2.34 44.17 0.10 10.16 16 3 H 0.02 1.01 8.03 -2.39 -0.02 0.99 16 4 C -0.52 -26.85 7.88 25.60 0.20 -26.65 16 5 H 0.06 2.94 6.77 -2.91 -0.02 2.92 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -50.45 11.32 21.45 0.24 -50.20 16 8 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 9 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 N -0.54 -20.84 4.73 -906.04 -4.29 -25.12 16 13 C 0.04 1.33 8.60 127.69 1.10 2.43 16 14 C 0.13 3.91 4.96 85.56 0.42 4.33 16 15 C 0.01 0.15 6.03 25.01 0.15 0.30 16 16 C -0.18 -5.05 10.92 22.60 0.25 -4.81 16 17 C -0.03 -0.78 7.19 42.96 0.31 -0.47 16 18 C 0.60 16.24 7.92 86.93 0.69 16.92 16 19 O -0.55 -18.37 17.17 -3.70 -0.06 -18.43 16 20 N -0.55 -10.28 6.47 -175.27 -1.13 -11.42 16 21 N -0.61 -8.91 10.03 37.02 0.37 -8.54 16 22 N -0.34 -8.83 11.84 -49.52 -0.59 -9.42 16 23 O 0.12 3.20 10.60 71.87 0.76 3.96 16 24 H 0.03 1.44 6.48 -2.39 -0.02 1.43 16 25 H 0.04 1.37 6.75 -2.39 -0.02 1.35 16 26 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 27 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.03 1.03 6.51 -2.39 -0.02 1.01 16 29 H 0.06 2.38 6.41 -2.39 -0.02 2.37 16 30 H 0.06 1.83 6.83 -2.39 -0.02 1.81 16 31 H 0.07 1.94 6.94 -2.39 -0.02 1.92 16 32 H 0.12 3.30 8.00 -2.39 -0.02 3.28 16 33 H 0.19 5.06 8.06 -2.91 -0.02 5.03 16 34 H 0.42 5.95 8.59 -215.50 -1.85 4.10 16 35 H 0.38 2.46 9.21 -210.56 -1.94 0.52 16 36 H 0.35 5.07 9.01 -210.55 -1.90 3.18 16 Total: -1.00 -63.33 304.41 -2.93 -66.26 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.53 Total: 11.46 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.27 Total: -3.07 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -5.39 Total: -104.70 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.70 Total: -14.47 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.33 -2.93 -66.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110583618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.402 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds