Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46955 * 111.00152 * 293.79749 * 4 3 2 6 6 C 1.53056 * 109.36311 * 176.81210 * 5 4 3 7 7 N 1.46959 * 109.36372 * 58.40247 * 6 5 4 8 8 C 1.46898 * 110.99735 * 176.80935 * 7 6 5 9 9 C 1.52999 * 109.47364 * 293.79766 * 8 7 6 10 10 C 1.53002 * 109.47475 * 180.02562 * 9 8 7 11 11 S 1.80999 * 109.47178 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99885 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99997 * 359.97438 * 12 11 10 14 14 C 1.38793 * 120.00182 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99799 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47115 * 59.99663 * 16 14 12 18 18 H 1.48497 * 109.47408 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46883 * 300.00408 * 16 14 12 20 20 C 1.46955 * 110.88047 * 300.67727 * 7 6 5 21 21 C 1.46959 * 110.99735 * 169.99868 * 4 3 2 22 22 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 24 24 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 25 25 H 1.08996 * 109.48813 * 296.77807 * 5 4 3 26 26 H 1.08997 * 109.48926 * 56.84659 * 5 4 3 27 27 H 1.08995 * 109.48768 * 298.43504 * 6 5 4 28 28 H 1.09001 * 109.48776 * 178.36940 * 6 5 4 29 29 H 1.08993 * 109.47283 * 53.79834 * 8 7 6 30 30 H 1.09003 * 109.46815 * 173.80054 * 8 7 6 31 31 H 1.09004 * 109.47385 * 300.00498 * 9 8 7 32 32 H 1.09003 * 109.46919 * 60.00352 * 9 8 7 33 33 H 1.08996 * 109.46828 * 300.00461 * 10 9 8 34 34 H 1.08993 * 109.46840 * 60.00063 * 10 9 8 35 35 H 0.97007 * 119.99615 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.48813 * 299.35639 * 20 7 6 37 37 H 1.08997 * 109.48926 * 179.28787 * 20 7 6 38 38 H 1.09001 * 109.48967 * 303.15640 * 21 4 3 39 39 H 1.08995 * 109.49013 * 63.22471 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7903 -2.2559 0.8672 6 6 3.2472 -3.6788 0.5367 7 7 4.6966 -3.6810 0.2941 8 6 5.1869 -5.0436 0.0474 9 6 5.0330 -5.8792 1.3198 10 6 5.5442 -7.2983 1.0630 11 16 5.3613 -8.2870 2.5681 12 6 6.0067 -9.8262 2.0033 13 1 6.3604 -9.9233 0.9874 14 6 6.0604 -10.9139 2.8638 15 7 5.6288 -10.7956 4.1017 16 14 6.7452 -12.5455 2.2653 17 1 8.1533 -12.3619 1.8307 18 1 6.6935 -13.5385 3.3681 19 1 5.9337 -13.0330 1.1210 20 6 5.0426 -2.7871 -0.8198 21 6 4.5856 -1.3642 -0.4894 22 1 -1.0498 -0.0004 0.0001 23 1 3.0090 0.6649 -0.7843 24 1 3.0092 0.3479 0.9672 25 1 3.2886 -1.9155 1.7749 26 1 1.7110 -2.2466 1.0192 27 1 2.7286 -4.0292 -0.3555 28 1 3.0176 -4.3381 1.3738 29 1 4.6089 -5.4976 -0.7575 30 1 6.2384 -5.0054 -0.2372 31 1 5.6110 -5.4253 2.1248 32 1 3.9814 -5.9174 1.6043 33 1 4.9665 -7.7524 0.2580 34 1 6.5957 -7.2597 0.7787 35 1 5.6661 -11.5560 4.7030 36 1 4.5443 -3.1275 -1.7275 37 1 6.1219 -2.7963 -0.9718 38 1 4.8153 -0.7049 -1.3264 39 1 5.1043 -1.0138 0.4029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119810243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = 55.676516 kcal Electronic energy + Delta-G solvation = -17515.572575 eV Core-core repulsion = 14778.610170 eV Total energy + Delta-G solvation = -2736.962405 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.56251 -36.55326 -33.66526 -32.42736 -32.17509 -31.06562 -28.59186 -25.85395 -25.27914 -23.90765 -23.33571 -20.77812 -19.91774 -18.41754 -17.44942 -16.53193 -15.64531 -15.25882 -15.13457 -14.84656 -14.77497 -14.64907 -14.15439 -13.84544 -13.38647 -13.12663 -12.78874 -12.41922 -11.96399 -11.69455 -11.50710 -11.41111 -11.15419 -11.06553 -11.00339 -10.76579 -10.64494 -10.56099 -10.41632 -10.20007 -9.50927 -9.03136 -8.69317 -8.32334 -8.27424 -6.50238 -6.20573 -3.90662 2.43882 2.60085 3.22919 3.24568 3.29099 3.55085 3.76763 3.92312 4.14006 4.24923 4.67954 4.86789 4.92421 5.07428 5.11893 5.15257 5.23852 5.28677 5.34710 5.38725 5.41161 5.57919 5.65539 5.69651 5.74143 5.78183 5.82615 5.87905 5.99230 6.11793 6.37812 6.61781 6.64029 6.71658 6.78584 7.07202 7.10135 7.37346 7.62249 8.38531 9.25510 10.87576 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044848 B = 0.002837 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.179468 B = 9868.852571 C =10233.253580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.162 3.838 4 N -0.539 5.539 5 C 0.058 3.942 6 C 0.054 3.946 7 N -0.540 5.540 8 C 0.061 3.939 9 C -0.093 4.093 10 C -0.112 4.112 11 S -0.133 6.133 12 C -0.516 4.516 13 H 0.071 0.929 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.057 3.943 21 C 0.059 3.941 22 H 0.217 0.783 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 20.820 -9.204 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.180 4.180 3 C 0.035 3.965 4 N -0.264 5.264 5 C -0.070 4.070 6 C -0.074 4.074 7 N -0.265 5.265 8 C -0.068 4.068 9 C -0.132 4.132 10 C -0.261 4.261 11 S 0.096 5.904 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.506 5.506 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.072 4.072 21 C -0.069 4.069 22 H 0.234 0.766 23 H 0.115 0.885 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.506 20.998 -8.002 23.136 hybrid contribution 0.681 -1.433 -1.581 2.240 sum -4.825 19.565 -9.583 22.314 Atomic orbital electron populations 1.24900 0.95911 0.99509 1.01319 1.22830 0.94192 1.00868 1.00146 1.18979 0.85234 0.90996 1.01254 1.62144 1.14340 1.07629 1.42310 1.22213 1.00648 0.92443 0.91710 1.22220 0.87679 0.96081 1.01453 1.62168 1.13785 1.09679 1.40840 1.22168 1.00054 0.86958 0.97604 1.21280 1.01846 0.93153 0.96942 1.23229 1.02235 0.97534 1.03152 1.84623 1.83481 1.08385 1.13961 1.22652 1.47628 0.95712 1.00453 0.91046 1.25014 0.95184 0.98977 0.94643 1.70021 1.44195 1.31496 1.04868 0.86226 0.79447 0.81529 0.78333 1.19944 1.20827 1.19961 1.22132 1.00533 0.91920 0.92578 1.22175 0.86531 0.97295 1.00910 0.76625 0.88549 0.92302 0.93619 0.90289 0.94067 0.89338 0.94853 0.90804 0.90821 0.91706 0.92372 0.92149 0.92279 0.94086 0.90091 0.90190 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.18 -1.75 12.40 -37.12 -0.46 -2.21 16 3 C 0.16 1.37 5.46 -6.61 -0.04 1.34 16 4 N -0.54 -5.44 4.69 -237.97 -1.12 -6.56 16 5 C 0.06 0.63 5.43 -3.77 -0.02 0.61 16 6 C 0.05 0.66 5.41 -3.76 -0.02 0.64 16 7 N -0.54 -6.77 4.71 -234.47 -1.10 -7.88 16 8 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 9 C -0.09 -1.56 5.15 -26.73 -0.14 -1.70 16 10 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 11 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 12 C -0.52 -14.97 9.50 30.94 0.29 -14.68 16 13 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 16 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 C 0.06 0.59 5.61 -3.77 -0.02 0.57 16 21 C 0.06 0.53 5.61 -3.76 -0.02 0.51 16 22 H 0.22 1.16 7.80 -54.10 -0.42 0.74 16 23 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 24 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.85 7.20 -51.93 -0.37 0.48 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.13 6.34 -51.93 -0.33 0.80 16 29 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.09 6.49 -51.93 -0.34 0.75 16 33 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -31.90 334.24 -10.02 -41.92 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.48 Total: -2.47 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 0.24 Total: -15.40 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -1.49 Total: -39.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.90 -10.02 -41.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119810243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.593 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds