Wall clock time and date at job start Mon Mar 30 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46955 * 111.00152 * 293.79749 * 4 3 2 6 6 C 1.53056 * 109.36311 * 176.81210 * 5 4 3 7 7 N 1.46959 * 109.36372 * 58.40247 * 6 5 4 8 8 C 1.46898 * 110.99735 * 176.80935 * 7 6 5 9 9 C 1.52999 * 109.47364 * 293.79766 * 8 7 6 10 10 C 1.53002 * 109.47475 * 180.02562 * 9 8 7 11 11 S 1.80999 * 109.47178 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99885 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99997 * 359.97438 * 12 11 10 14 14 C 1.38793 * 120.00182 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99799 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00352 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47115 * 59.99663 * 16 14 12 18 18 H 1.48497 * 109.47408 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46883 * 300.00408 * 16 14 12 20 20 C 1.46955 * 110.88047 * 300.67727 * 7 6 5 21 21 C 1.46959 * 110.99735 * 169.99868 * 4 3 2 22 22 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 24 24 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 25 25 H 1.08996 * 109.48813 * 296.77807 * 5 4 3 26 26 H 1.08997 * 109.48926 * 56.84659 * 5 4 3 27 27 H 1.08995 * 109.48768 * 298.43504 * 6 5 4 28 28 H 1.09001 * 109.48776 * 178.36940 * 6 5 4 29 29 H 1.08993 * 109.47283 * 53.79834 * 8 7 6 30 30 H 1.09003 * 109.46815 * 173.80054 * 8 7 6 31 31 H 1.09004 * 109.47385 * 300.00498 * 9 8 7 32 32 H 1.09003 * 109.46919 * 60.00352 * 9 8 7 33 33 H 1.08996 * 109.46828 * 300.00461 * 10 9 8 34 34 H 1.08993 * 109.46840 * 60.00063 * 10 9 8 35 35 H 0.97007 * 119.99615 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.48813 * 299.35639 * 20 7 6 37 37 H 1.08997 * 109.48926 * 179.28787 * 20 7 6 38 38 H 1.09001 * 109.48967 * 303.15640 * 21 4 3 39 39 H 1.08995 * 109.49013 * 63.22471 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7903 -2.2559 0.8672 6 6 3.2472 -3.6788 0.5367 7 7 4.6966 -3.6810 0.2941 8 6 5.1869 -5.0436 0.0474 9 6 5.0330 -5.8792 1.3198 10 6 5.5442 -7.2983 1.0630 11 16 5.3613 -8.2870 2.5681 12 6 6.0067 -9.8262 2.0033 13 1 6.3604 -9.9233 0.9874 14 6 6.0604 -10.9139 2.8638 15 7 5.6288 -10.7956 4.1017 16 14 6.7452 -12.5455 2.2653 17 1 8.1533 -12.3619 1.8307 18 1 6.6935 -13.5385 3.3681 19 1 5.9337 -13.0330 1.1210 20 6 5.0426 -2.7871 -0.8198 21 6 4.5856 -1.3642 -0.4894 22 1 -1.0498 -0.0004 0.0001 23 1 3.0090 0.6649 -0.7843 24 1 3.0092 0.3479 0.9672 25 1 3.2886 -1.9155 1.7749 26 1 1.7110 -2.2466 1.0192 27 1 2.7286 -4.0292 -0.3555 28 1 3.0176 -4.3381 1.3738 29 1 4.6089 -5.4976 -0.7575 30 1 6.2384 -5.0054 -0.2372 31 1 5.6110 -5.4253 2.1248 32 1 3.9814 -5.9174 1.6043 33 1 4.9665 -7.7524 0.2580 34 1 6.5957 -7.2597 0.7787 35 1 5.6661 -11.5560 4.7030 36 1 4.5443 -3.1275 -1.7275 37 1 6.1219 -2.7963 -0.9718 38 1 4.8153 -0.7049 -1.3264 39 1 5.1043 -1.0138 0.4029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119810243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:49 Heat of formation + Delta-G solvation = 34.682861 kcal Electronic energy + Delta-G solvation = -17516.482928 eV Core-core repulsion = 14778.610170 eV Total energy + Delta-G solvation = -2737.872758 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42588 -37.49079 -34.70598 -34.55755 -33.19704 -31.91645 -29.51876 -27.83282 -26.53221 -24.83425 -24.34118 -22.07594 -20.79054 -19.55123 -19.04981 -17.44078 -16.89420 -16.66031 -16.27932 -16.08881 -15.86343 -15.74604 -15.37749 -15.14795 -14.70414 -14.08263 -13.89584 -13.63311 -13.36293 -13.14976 -12.92445 -12.81013 -12.60159 -12.44926 -12.25163 -12.08619 -11.93764 -11.56529 -11.41540 -11.20177 -11.12828 -11.07199 -10.31926 -9.47926 -9.27760 -8.66840 -8.37073 -6.13639 1.31225 1.40964 1.47745 1.74172 1.75561 1.93183 2.28642 2.88151 2.96968 3.06064 3.32928 3.52676 3.85790 3.92167 4.07444 4.15036 4.26494 4.29955 4.39389 4.43421 4.50242 4.54490 4.58077 4.65272 4.71676 4.80950 4.84470 4.90264 5.01131 5.03566 5.13042 5.18727 5.31115 5.39403 5.87387 5.92675 6.11479 6.14686 6.18026 6.71931 7.04820 8.72174 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044848 B = 0.002837 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.179468 B = 9868.852571 C =10233.253580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.213 4.213 3 C 0.162 3.838 4 N -0.549 5.549 5 C 0.065 3.935 6 C 0.056 3.944 7 N -0.547 5.547 8 C 0.072 3.928 9 C -0.081 4.081 10 C -0.086 4.086 11 S -0.199 6.199 12 C -0.539 4.539 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.908 5.908 16 Si 0.994 3.006 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.265 1.265 20 C 0.056 3.944 21 C 0.061 3.939 22 H 0.242 0.758 23 H 0.115 0.885 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.271 0.729 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 21.490 -10.765 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.214 4.214 3 C 0.036 3.964 4 N -0.274 5.274 5 C -0.063 4.063 6 C -0.073 4.073 7 N -0.272 5.272 8 C -0.057 4.057 9 C -0.120 4.120 10 C -0.236 4.236 11 S 0.029 5.971 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.816 3.184 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.072 4.072 21 C -0.066 4.066 22 H 0.258 0.742 23 H 0.133 0.867 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.069 21.691 -9.571 24.244 hybrid contribution 0.490 -1.538 -1.119 1.964 sum -4.579 20.153 -10.690 23.267 Atomic orbital electron populations 1.25669 0.96864 0.98469 1.00460 1.23343 0.95121 1.01860 1.01054 1.19074 0.84799 0.90303 1.02264 1.62138 1.15071 1.08450 1.41751 1.22073 1.00375 0.91894 0.91955 1.22176 0.87628 0.96845 1.00625 1.62146 1.13805 1.09101 1.42107 1.21973 1.00855 0.87354 0.95536 1.21152 1.01141 0.91285 0.98435 1.23145 1.02735 0.98214 0.99497 1.84653 1.83788 1.09617 1.19024 1.23012 1.48080 0.96794 1.00757 0.90886 1.26088 0.95187 1.03136 0.94657 1.70158 1.45206 1.32860 1.06218 0.85060 0.78994 0.76219 0.78107 1.18854 1.19954 1.18928 1.22237 1.01394 0.92125 0.91470 1.22215 0.85835 0.96728 1.01828 0.74199 0.86744 0.91711 0.94095 0.90539 0.94799 0.90489 0.94737 0.89718 0.91577 0.92148 0.92162 0.91700 0.91960 0.94494 0.88734 0.87800 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.14 19.25 74.32 1.43 -1.71 16 2 C -0.21 -3.90 12.40 31.13 0.39 -3.51 16 3 C 0.16 2.48 5.46 84.50 0.46 2.94 16 4 N -0.55 -10.22 4.69 -906.81 -4.25 -14.47 16 5 C 0.07 1.38 5.43 86.31 0.47 1.85 16 6 C 0.06 1.33 5.41 86.31 0.47 1.80 16 7 N -0.55 -13.03 4.71 -895.72 -4.22 -17.25 16 8 C 0.07 1.89 4.96 86.30 0.43 2.31 16 9 C -0.08 -2.68 5.15 30.59 0.16 -2.52 16 10 C -0.09 -3.52 5.67 71.98 0.41 -3.11 16 11 S -0.20 -10.81 21.44 -56.49 -1.21 -12.02 16 12 C -0.54 -31.51 9.50 67.95 0.65 -30.87 16 13 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 14 C 0.01 0.81 5.49 84.86 0.47 1.28 16 15 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 16 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 20 C 0.06 1.04 5.61 86.31 0.48 1.53 16 21 C 0.06 0.97 5.61 86.31 0.48 1.45 16 22 H 0.24 2.13 7.80 -4.43 -0.03 2.10 16 23 H 0.11 1.30 8.03 -2.39 -0.02 1.28 16 24 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.08 1.63 7.20 -2.39 -0.02 1.62 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.99 6.34 -2.39 -0.02 1.97 16 29 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.08 2.05 8.03 -2.39 -0.02 2.03 16 31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.06 2.05 6.49 -2.39 -0.02 2.03 16 33 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 34 H 0.06 2.58 8.14 -2.40 -0.02 2.56 16 35 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.52 8.07 -2.39 -0.02 1.50 16 38 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -68.73 334.24 -0.09 -68.81 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.99 Total: 12.40 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 6.29 Total: -28.56 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -8.18 Total: -86.90 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.21 Total: -12.02 kcal Total: -68.73 -0.09 -68.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119810243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.498 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds