Wall clock time and date at job start Mon Mar 30 2020 04:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48498 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47055 * 299.99596 * 3 2 1 6 6 H 1.48490 * 109.47288 * 59.99825 * 3 2 1 7 7 C 1.39579 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00257 * 180.02562 * 7 2 1 9 9 N 1.36124 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.34769 * 119.99972 * 180.02562 * 9 7 2 11 11 O 1.21497 * 120.00694 * 359.97438 * 10 9 7 12 12 C 1.48841 * 119.99815 * 179.97438 * 10 9 7 13 13 O 1.21433 * 119.99919 * 359.97438 * 12 10 9 14 14 N 1.34779 * 119.99812 * 179.97438 * 12 10 9 15 15 C 1.47210 * 126.70140 * 0.02562 * 14 12 10 16 16 C 1.53784 * 106.37501 * 148.70169 * 15 14 12 17 17 H 1.09002 * 111.70830 * 257.23668 * 16 15 14 18 18 C 1.54325 * 109.78961 * 132.75944 * 16 15 14 19 19 C 1.54208 * 104.34253 * 222.84567 * 18 16 15 20 20 C 1.55061 * 102.50444 * 39.00107 * 19 18 16 21 21 H 1.08998 * 110.53135 * 201.94990 * 20 19 18 22 22 O 1.42897 * 110.65288 * 79.23488 * 20 19 18 23 23 C 1.54328 * 103.93501 * 320.56405 * 20 19 18 24 24 H 1.09001 * 111.68417 * 262.79210 * 23 20 19 25 25 C 1.47210 * 126.69943 * 180.02562 * 14 12 10 26 26 H 0.97003 * 120.00186 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99908 * 359.97438 * 9 7 2 28 28 H 1.09000 * 110.07743 * 29.47811 * 15 14 12 29 29 H 1.08992 * 110.07588 * 267.92917 * 15 14 12 30 30 H 1.08993 * 110.53716 * 340.30595 * 18 16 15 31 31 H 1.09000 * 110.53237 * 103.08116 * 18 16 15 32 32 H 1.09002 * 110.18016 * 280.91072 * 19 18 16 33 33 H 1.08994 * 111.27858 * 157.59547 * 19 18 16 34 34 H 0.96696 * 114.00117 * 65.41208 * 22 20 19 35 35 H 1.09000 * 110.07628 * 92.06544 * 25 14 12 36 36 H 1.09007 * 110.12080 * 330.55268 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3465 -0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3965 1.2124 7 6 2.0081 -1.2088 0.0005 8 1 3.0882 -1.2088 0.0010 9 7 1.3276 -2.3877 0.0005 10 6 2.0015 -3.5548 0.0016 11 8 3.2165 -3.5548 0.0021 12 6 1.2573 -4.8438 0.0022 13 8 0.0430 -4.8438 0.0022 14 7 1.9313 -6.0110 0.0027 15 6 3.3933 -6.1827 0.0033 16 6 3.6766 -7.4852 0.7702 17 1 4.0299 -7.2884 1.7824 18 6 4.6758 -8.3525 -0.0242 19 6 4.1090 -9.7827 0.0822 20 6 2.5812 -9.5485 -0.0424 21 1 2.0300 -10.3837 0.3896 22 8 2.2104 -9.3580 -1.4091 23 6 2.3353 -8.2596 0.7700 24 1 1.9954 -8.4800 1.7819 25 6 1.3491 -7.3630 0.0028 26 1 -0.4850 0.8401 -0.0004 27 1 0.3576 -2.3877 0.0005 28 1 3.8687 -5.3410 0.5071 29 1 3.7610 -6.2633 -1.0196 30 1 4.6973 -8.0494 -1.0709 31 1 5.6715 -8.2872 0.4143 32 1 4.3584 -10.2149 1.0513 33 1 4.4731 -10.4138 -0.7284 34 1 2.3445 -10.1375 -1.9654 35 1 1.2354 -7.7215 -1.0203 36 1 0.3819 -7.3548 0.5056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123577453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:13 Heat of formation + Delta-G solvation = -114.427067 kcal Electronic energy + Delta-G solvation = -20849.930636 eV Core-core repulsion = 17527.006021 eV Total energy + Delta-G solvation = -3322.924615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42914 -38.88193 -37.04681 -36.06208 -34.36704 -33.69504 -31.38715 -30.11770 -29.08442 -26.07048 -25.36486 -23.95496 -21.54167 -21.09238 -19.23991 -18.84516 -18.06105 -17.44846 -16.35792 -16.25993 -15.91200 -15.45627 -14.81972 -14.57469 -14.00317 -13.68398 -13.53197 -13.09111 -12.95728 -12.73732 -12.38886 -12.20799 -12.02333 -11.75345 -11.36152 -11.19510 -10.88831 -10.76948 -10.70061 -10.53263 -10.42757 -10.37934 -10.14462 -9.99418 -9.69660 -8.25632 -8.18248 -8.01131 -6.63474 -3.96028 2.51206 3.16244 3.17626 3.23975 3.38620 3.94230 4.07885 4.20580 4.30833 4.48324 4.74317 4.90350 5.13755 5.18483 5.20078 5.22981 5.34234 5.41366 5.50294 5.60485 5.68616 5.83669 5.95677 5.98981 6.12718 6.16658 6.38456 6.41113 6.45564 6.79698 7.34502 7.51695 7.78782 7.97947 8.35650 8.66009 9.00138 9.36294 9.89208 10.51646 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042619 B = 0.004260 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.820559 B = 6570.563975 C = 7019.756803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.501 5.501 10 C 0.400 3.600 11 O -0.591 6.591 12 C 0.528 3.472 13 O -0.549 6.549 14 N -0.598 5.598 15 C 0.106 3.894 16 C -0.104 4.104 17 H 0.087 0.913 18 C -0.112 4.112 19 C -0.154 4.154 20 C 0.105 3.895 21 H 0.061 0.939 22 O -0.552 6.552 23 C -0.099 4.099 24 H 0.094 0.906 25 C 0.108 3.892 26 H 0.279 0.721 27 H 0.405 0.595 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.373 0.627 35 H 0.094 0.906 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -17.973 0.556 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.135 5.135 10 C 0.185 3.815 11 O -0.480 6.480 12 C 0.315 3.685 13 O -0.427 6.427 14 N -0.332 5.332 15 C -0.017 4.017 16 C -0.124 4.124 17 H 0.105 0.895 18 C -0.150 4.150 19 C -0.192 4.192 20 C 0.045 3.955 21 H 0.079 0.921 22 O -0.358 6.358 23 C -0.118 4.118 24 H 0.112 0.888 25 C -0.014 4.014 26 H 0.090 0.910 27 H 0.240 0.760 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.971 -17.109 0.767 18.137 hybrid contribution -0.081 0.110 -0.148 0.201 sum 5.890 -16.999 0.619 18.002 Atomic orbital electron populations 1.69499 1.06520 1.29183 1.45600 1.25580 0.95615 1.00433 0.95998 0.85671 0.79849 0.80075 0.78029 1.18735 1.20321 1.20325 1.19919 0.93962 0.81835 1.47849 0.86931 1.41557 1.10480 1.04143 1.57292 1.18880 0.87776 0.84084 0.90797 1.90484 1.12893 1.86127 1.58465 1.20412 0.86987 0.84624 0.76442 1.90683 1.13936 1.87461 1.50583 1.48161 1.07946 1.04583 1.72553 1.22478 0.80812 0.97879 1.00493 1.22711 0.94323 0.95343 0.99973 0.89467 1.22317 0.98017 0.93830 1.00819 1.23117 0.96076 0.97818 1.02146 1.22479 0.93676 0.96460 0.82839 0.92103 1.86554 1.87916 1.41417 1.19914 1.22730 0.96449 0.93987 0.98619 0.88789 1.21954 0.96335 0.81089 1.02069 0.91015 0.76013 0.87035 0.91789 0.90829 0.91314 0.90732 0.91138 0.77923 0.88842 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 13.03 55.53 0.72 -23.01 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.32 29.56 -169.99 -5.02 15.29 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.54 9.67 -15.15 -0.15 -8.68 16 8 H 0.11 3.20 7.15 -52.48 -0.38 2.82 16 9 N -0.50 -13.79 5.25 -11.59 -0.06 -13.85 16 10 C 0.40 10.47 7.79 -11.87 -0.09 10.38 16 11 O -0.59 -15.89 13.30 5.37 0.07 -15.82 16 12 C 0.53 12.54 7.92 -11.87 -0.09 12.44 16 13 O -0.55 -13.96 16.70 5.42 0.09 -13.87 16 14 N -0.60 -11.71 3.32 -172.31 -0.57 -12.29 16 15 C 0.11 1.81 5.93 -3.25 -0.02 1.79 16 16 C -0.10 -1.31 3.88 -88.53 -0.34 -1.65 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.11 -1.13 6.28 -25.41 -0.16 -1.29 16 19 C -0.15 -1.21 6.61 -25.01 -0.17 -1.37 16 20 C 0.10 0.96 4.12 -24.95 -0.10 0.86 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 22 O -0.55 -5.53 10.91 -35.23 -0.38 -5.92 16 23 C -0.10 -1.18 3.90 -88.52 -0.35 -1.53 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 25 C 0.11 1.73 6.42 -3.24 -0.02 1.71 16 26 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 27 H 0.40 11.28 7.35 -40.82 -0.30 10.98 16 28 H 0.11 2.18 5.75 -51.93 -0.30 1.88 16 29 H 0.06 1.09 7.19 -51.93 -0.37 0.71 16 30 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.37 2.05 9.12 45.56 0.42 2.47 16 35 H 0.09 1.52 5.75 -51.93 -0.30 1.22 16 36 H 0.07 1.17 7.92 -51.92 -0.41 0.76 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -32.36 296.03 -5.97 -38.32 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -3.69 Total: 13.31 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -1.58 Total: 13.36 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.09 Total: -49.14 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.22 Total: -35.61 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.36 -5.97 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123577453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.103 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds