Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00792 * 2 1 4 4 C 1.52998 * 109.47665 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46871 * 64.20079 * 4 3 2 6 6 C 1.46899 * 110.99926 * 72.00417 * 5 4 3 7 7 C 1.50694 * 109.47024 * 61.36747 * 6 5 4 8 8 H 1.08002 * 120.00197 * 4.29853 * 7 6 5 9 9 C 1.37883 * 119.99910 * 184.30243 * 7 6 5 10 10 N 1.31521 * 119.99679 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00032 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47001 * 90.00086 * 11 9 7 13 13 H 1.48498 * 109.46859 * 209.99911 * 11 9 7 14 14 H 1.48498 * 109.47048 * 329.99819 * 11 9 7 15 15 C 1.38477 * 111.00238 * 195.96118 * 5 4 3 16 16 N 1.34170 * 120.23779 * 351.17794 * 15 5 4 17 17 C 1.30427 * 121.36180 * 179.97438 * 16 15 5 18 18 N 1.34901 * 121.78843 * 0.02562 * 17 16 15 19 19 H 0.96992 * 119.84948 * 180.02562 * 18 17 16 20 20 C 1.34957 * 120.30222 * 359.97438 * 18 17 16 21 21 O 1.22128 * 120.66353 * 179.97438 * 20 18 17 22 22 C 1.38756 * 120.24006 * 171.15616 * 15 5 4 23 23 N 1.40735 * 120.82407 * 0.04678 * 22 15 5 24 24 H 1.09004 * 109.46614 * 300.00426 * 1 2 3 25 25 H 1.09000 * 109.47051 * 59.99592 * 1 2 3 26 26 H 1.08995 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46633 * 59.99697 * 3 2 1 28 28 H 1.09005 * 109.46711 * 300.00437 * 3 2 1 29 29 H 1.08998 * 109.46878 * 304.20396 * 4 3 2 30 30 H 1.08994 * 109.47031 * 184.19500 * 4 3 2 31 31 H 1.09003 * 109.46892 * 181.36679 * 6 5 4 32 32 H 1.08997 * 109.47306 * 301.35935 * 6 5 4 33 33 H 0.96997 * 119.99357 * 180.02562 * 10 9 7 34 34 H 1.07996 * 119.10748 * 180.28047 * 17 16 15 35 35 H 0.97007 * 120.00392 * 171.61157 * 23 22 15 36 36 H 0.97001 * 120.00296 * 351.61671 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9766 0.5447 -1.2460 6 6 3.8246 1.4562 -2.3879 7 6 4.6823 2.6766 -2.1740 8 1 5.3330 2.7354 -1.3141 9 6 4.6362 3.7184 -3.0762 10 7 5.3844 4.7837 -2.8892 11 14 3.5111 3.6165 -4.5638 12 1 2.1825 4.1836 -4.2194 13 1 4.1030 4.3885 -5.6858 14 1 3.3534 2.1966 -4.9689 15 6 5.2825 0.0967 -1.1390 16 7 6.0248 0.4270 -0.0713 17 6 7.2567 0.0169 0.0521 18 7 7.8453 -0.7566 -0.8834 19 1 8.7631 -1.0460 -0.7628 20 6 7.1625 -1.1304 -1.9858 21 8 7.6890 -1.8301 -2.8371 22 6 5.8327 -0.6975 -2.1350 23 7 5.0790 -1.0600 -3.2669 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6888 1.8462 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8517 0.5800 0.8508 30 1 3.9787 2.1774 0.0758 31 1 4.1354 0.9492 -3.3014 32 1 2.7806 1.7567 -2.4766 33 1 5.3517 5.5167 -3.5236 34 1 7.8196 0.3008 0.9289 35 1 5.5079 -1.5108 -4.0112 36 1 4.1307 -0.8592 -3.3029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163433857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = -14.673812 kcal Electronic energy + Delta-G solvation = -21405.989789 eV Core-core repulsion = 18119.683551 eV Total energy + Delta-G solvation = -3286.306238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -41.10670 -38.34030 -37.15378 -36.47003 -33.91208 -32.76750 -32.21761 -29.49283 -28.52152 -27.00908 -25.83808 -23.68649 -22.84368 -22.48255 -20.00616 -18.35510 -18.18692 -17.17801 -16.63511 -16.06531 -15.61736 -15.41471 -15.09822 -14.97214 -14.49951 -14.15653 -13.92400 -13.90280 -13.64963 -12.52487 -12.29145 -12.23419 -11.85000 -11.63985 -11.26043 -11.06021 -10.95519 -10.54724 -10.40416 -10.13212 -9.78015 -9.72613 -9.55639 -9.41271 -9.22527 -8.66324 -7.99422 -6.31098 -6.17922 -4.17718 1.40394 2.40777 3.19556 3.19882 3.29112 3.30930 4.13535 4.23122 4.31588 4.50620 4.60124 4.69423 5.15677 5.38518 5.44421 5.51881 5.56694 5.76340 5.80496 5.83532 5.92596 6.03032 6.46133 6.60390 6.73554 6.77710 6.88135 6.95348 7.34063 7.55394 7.70262 7.85365 8.11431 8.33971 8.40107 8.42794 8.54742 8.87359 9.42908 10.94563 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.009495 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.084527 B = 2948.204377 C = 4177.321379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.072 3.928 5 N -0.459 5.459 6 C 0.148 3.852 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.076 3.924 10 N -0.893 5.893 11 Si 0.873 3.127 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.264 1.264 15 C 0.290 3.710 16 N -0.506 5.506 17 C 0.312 3.688 18 N -0.624 5.624 19 H 0.413 0.587 20 C 0.513 3.487 21 O -0.570 6.570 22 C 0.029 3.971 23 N -0.849 5.849 24 H 0.033 0.967 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.197 0.803 35 H 0.394 0.606 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -8.275 6.829 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.013 4.013 4 C -0.055 4.055 5 N -0.176 5.176 6 C 0.023 3.977 7 C -0.588 4.588 8 H 0.102 0.898 9 C -0.127 4.127 10 N -0.530 5.530 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.189 1.189 15 C 0.068 3.932 16 N -0.228 5.228 17 C 0.023 3.977 18 N -0.265 5.265 19 H 0.250 0.750 20 C 0.312 3.688 21 O -0.453 6.453 22 C -0.083 4.083 23 N -0.395 5.395 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.214 0.786 35 H 0.223 0.777 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.126 -8.528 6.607 11.231 hybrid contribution 0.196 0.535 -1.506 1.610 sum -2.929 -7.993 5.101 9.924 Atomic orbital electron populations 1.22655 0.82627 1.01887 0.99386 1.87981 1.18169 1.28395 1.95251 1.22705 0.94455 0.84195 0.99908 1.21947 0.91557 1.00696 0.91275 1.59365 1.13588 1.37878 1.06800 1.20495 0.97416 0.90769 0.88998 1.21641 1.25083 1.00421 1.11605 0.89772 1.24904 0.95239 0.95051 0.97528 1.69908 1.39495 1.06856 1.36779 0.86887 0.81141 0.78815 0.83139 1.20149 1.21170 1.18876 1.19066 0.89962 0.94415 0.89795 1.68152 1.04787 1.24319 1.25542 1.24192 0.90763 0.89872 0.92862 1.44333 1.17459 1.44766 1.19981 0.74967 1.16436 0.87066 0.83137 0.82143 1.90944 1.71230 1.41508 1.41635 1.18651 0.92139 1.04028 0.93436 1.42033 1.11049 1.68837 1.17577 0.94815 0.94532 0.90356 0.93474 0.92813 0.90493 0.89696 0.93830 0.94804 0.92601 0.78647 0.77726 0.76270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.39 10.64 -35.23 -0.37 -6.76 16 3 C 0.06 1.09 6.08 37.16 0.23 1.31 16 4 C 0.07 1.38 4.48 -3.82 -0.02 1.36 16 5 N -0.46 -9.43 4.20 -174.35 -0.73 -10.16 16 6 C 0.15 3.37 3.50 -4.98 -0.02 3.35 16 7 C -0.55 -14.61 8.09 -34.44 -0.28 -14.89 16 8 H 0.08 2.45 6.81 -52.49 -0.36 2.09 16 9 C 0.08 2.11 5.47 -17.81 -0.10 2.01 16 10 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 11 Si 0.87 20.78 27.39 -169.99 -4.66 16.13 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.26 -6.04 6.67 56.52 0.38 -5.66 16 15 C 0.29 5.88 5.15 -154.14 -0.79 5.09 16 16 N -0.51 -9.09 8.61 -13.36 -0.11 -9.21 16 17 C 0.31 4.23 12.34 -90.56 -1.12 3.12 16 18 N -0.62 -8.73 5.24 -16.20 -0.08 -8.82 16 19 H 0.41 4.20 8.91 -40.82 -0.36 3.84 16 20 C 0.51 9.69 7.74 -15.27 -0.12 9.57 16 21 O -0.57 -11.98 17.38 4.80 0.08 -11.90 16 22 C 0.03 0.59 6.60 -82.67 -0.55 0.04 16 23 N -0.85 -15.86 8.09 32.93 0.27 -15.60 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.96 6.59 -51.93 -0.34 0.62 16 29 H 0.08 1.41 7.44 -51.93 -0.39 1.02 16 30 H 0.09 1.80 6.35 -51.93 -0.33 1.47 16 31 H 0.04 1.02 4.93 -51.93 -0.26 0.76 16 32 H 0.03 0.77 5.77 -51.93 -0.30 0.47 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.39 6.91 8.40 -40.82 -0.34 6.57 16 36 H 0.41 7.40 6.76 -40.82 -0.28 7.12 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -34.06 297.75 -6.23 -40.29 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -4.23 Total: 14.69 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.65 Total: 12.48 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: 0.11 Total: -69.41 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.29 Total: -18.66 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.66 Total: 16.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.06 -6.23 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163433857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.618 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.93 seconds