Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00792 * 2 1 4 4 C 1.52998 * 109.47665 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46871 * 64.20079 * 4 3 2 6 6 C 1.46899 * 110.99926 * 72.00417 * 5 4 3 7 7 C 1.50694 * 109.47024 * 61.36747 * 6 5 4 8 8 H 1.08002 * 120.00197 * 4.29853 * 7 6 5 9 9 C 1.37883 * 119.99910 * 184.30243 * 7 6 5 10 10 N 1.31521 * 119.99679 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00032 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47001 * 90.00086 * 11 9 7 13 13 H 1.48498 * 109.46859 * 209.99911 * 11 9 7 14 14 H 1.48498 * 109.47048 * 329.99819 * 11 9 7 15 15 C 1.38477 * 111.00238 * 195.96118 * 5 4 3 16 16 N 1.34170 * 120.23779 * 351.17794 * 15 5 4 17 17 C 1.30427 * 121.36180 * 179.97438 * 16 15 5 18 18 N 1.34901 * 121.78843 * 0.02562 * 17 16 15 19 19 H 0.96992 * 119.84948 * 180.02562 * 18 17 16 20 20 C 1.34957 * 120.30222 * 359.97438 * 18 17 16 21 21 O 1.22128 * 120.66353 * 179.97438 * 20 18 17 22 22 C 1.38756 * 120.24006 * 171.15616 * 15 5 4 23 23 N 1.40735 * 120.82407 * 0.04678 * 22 15 5 24 24 H 1.09004 * 109.46614 * 300.00426 * 1 2 3 25 25 H 1.09000 * 109.47051 * 59.99592 * 1 2 3 26 26 H 1.08995 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46633 * 59.99697 * 3 2 1 28 28 H 1.09005 * 109.46711 * 300.00437 * 3 2 1 29 29 H 1.08998 * 109.46878 * 304.20396 * 4 3 2 30 30 H 1.08994 * 109.47031 * 184.19500 * 4 3 2 31 31 H 1.09003 * 109.46892 * 181.36679 * 6 5 4 32 32 H 1.08997 * 109.47306 * 301.35935 * 6 5 4 33 33 H 0.96997 * 119.99357 * 180.02562 * 10 9 7 34 34 H 1.07996 * 119.10748 * 180.28047 * 17 16 15 35 35 H 0.97007 * 120.00392 * 171.61157 * 23 22 15 36 36 H 0.97001 * 120.00296 * 351.61671 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9766 0.5447 -1.2460 6 6 3.8246 1.4562 -2.3879 7 6 4.6823 2.6766 -2.1740 8 1 5.3330 2.7354 -1.3141 9 6 4.6362 3.7184 -3.0762 10 7 5.3844 4.7837 -2.8892 11 14 3.5111 3.6165 -4.5638 12 1 2.1825 4.1836 -4.2194 13 1 4.1030 4.3885 -5.6858 14 1 3.3534 2.1966 -4.9689 15 6 5.2825 0.0967 -1.1390 16 7 6.0248 0.4270 -0.0713 17 6 7.2567 0.0169 0.0521 18 7 7.8453 -0.7566 -0.8834 19 1 8.7631 -1.0460 -0.7628 20 6 7.1625 -1.1304 -1.9858 21 8 7.6890 -1.8301 -2.8371 22 6 5.8327 -0.6975 -2.1350 23 7 5.0790 -1.0600 -3.2669 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6888 1.8462 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8517 0.5800 0.8508 30 1 3.9787 2.1774 0.0758 31 1 4.1354 0.9492 -3.3014 32 1 2.7806 1.7567 -2.4766 33 1 5.3517 5.5167 -3.5236 34 1 7.8196 0.3008 0.9289 35 1 5.5079 -1.5108 -4.0112 36 1 4.1307 -0.8592 -3.3029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163433857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -42.462988 kcal Electronic energy + Delta-G solvation = -21407.194818 eV Core-core repulsion = 18119.683551 eV Total energy + Delta-G solvation = -3287.511267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49269 -39.82891 -38.48054 -37.86956 -35.42412 -34.57821 -33.80403 -30.95336 -30.13176 -28.61024 -26.96903 -25.23115 -24.29459 -24.03064 -21.60401 -19.65907 -19.61260 -19.10492 -18.15463 -17.37885 -16.97816 -16.84013 -16.57792 -16.43223 -15.91868 -15.71584 -15.52064 -15.32346 -14.94379 -14.44574 -13.75655 -13.72375 -13.42368 -13.12978 -12.76620 -12.68272 -12.44737 -12.11909 -11.96993 -11.75587 -11.68194 -11.25727 -11.04335 -10.87772 -10.71344 -10.44956 -9.61365 -8.29921 -7.80877 -6.32592 0.04536 0.99916 1.32101 1.35941 1.44814 1.96720 2.32361 2.69275 3.03132 3.05091 3.11817 3.16479 3.50378 4.11843 4.25877 4.27121 4.35686 4.54072 4.61343 4.64679 4.65580 4.89667 4.92264 4.99422 5.06451 5.19065 5.34151 5.44024 5.73913 5.94963 6.24422 6.36865 6.42338 6.63014 6.73646 7.00900 7.04485 7.17789 7.31563 8.85467 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.009495 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.084527 B = 2948.204377 C = 4177.321379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.071 3.929 4 C 0.079 3.921 5 N -0.458 5.458 6 C 0.159 3.841 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.019 3.981 10 N -0.940 5.940 11 Si 0.933 3.067 12 H -0.263 1.263 13 H -0.290 1.290 14 H -0.249 1.249 15 C 0.279 3.721 16 N -0.541 5.541 17 C 0.340 3.660 18 N -0.607 5.607 19 H 0.435 0.565 20 C 0.506 3.494 21 O -0.597 6.597 22 C -0.004 4.004 23 N -0.851 5.851 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.259 0.741 35 H 0.397 0.603 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -9.112 7.637 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.006 4.006 4 C -0.048 4.048 5 N -0.175 5.175 6 C 0.034 3.966 7 C -0.577 4.577 8 H 0.069 0.931 9 C -0.180 4.180 10 N -0.580 5.580 11 Si 0.757 3.243 12 H -0.187 1.187 13 H -0.216 1.216 14 H -0.172 1.172 15 C 0.056 3.944 16 N -0.264 5.264 17 C 0.052 3.948 18 N -0.248 5.248 19 H 0.276 0.724 20 C 0.305 3.695 21 O -0.483 6.483 22 C -0.115 4.115 23 N -0.398 5.398 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.275 0.725 35 H 0.226 0.774 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.633 -9.397 7.452 12.531 hybrid contribution 0.466 0.766 -1.567 1.805 sum -3.167 -8.630 5.885 10.916 Atomic orbital electron populations 1.22884 0.80385 1.03439 1.00399 1.87932 1.20618 1.28018 1.95435 1.22568 0.92999 0.84644 1.00413 1.21857 0.93072 0.98999 0.90909 1.59337 1.14490 1.37057 1.06601 1.20259 0.96705 0.89576 0.90091 1.21807 1.24350 1.01581 1.09991 0.93110 1.25721 0.96891 0.94751 1.00639 1.70049 1.41830 1.07931 1.38238 0.85918 0.79536 0.79547 0.79277 1.18748 1.21629 1.17245 1.19281 0.90198 0.94277 0.90628 1.68174 1.06660 1.26216 1.25389 1.25433 0.89657 0.86519 0.93185 1.44184 1.18285 1.43769 1.18552 0.72388 1.16483 0.87034 0.83017 0.82975 1.90919 1.71763 1.42741 1.42916 1.18943 0.93135 1.05280 0.94127 1.41955 1.10973 1.69226 1.17621 0.93029 0.94238 0.88618 0.91173 0.94050 0.89896 0.92483 0.93994 0.94180 0.92698 0.72504 0.77419 0.76340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -12.85 10.64 -148.98 -1.58 -14.44 16 3 C 0.07 2.32 6.08 71.98 0.44 2.75 16 4 C 0.08 2.98 4.48 86.30 0.39 3.37 16 5 N -0.46 -18.71 4.20 -705.53 -2.97 -21.68 16 6 C 0.16 7.23 3.50 85.56 0.30 7.53 16 7 C -0.54 -29.03 8.09 25.60 0.21 -28.83 16 8 H 0.05 3.04 6.81 -2.91 -0.02 3.02 16 9 C 0.02 1.04 5.47 84.66 0.46 1.50 16 10 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 11 Si 0.93 42.69 27.39 68.60 1.88 44.57 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.25 -10.67 6.67 99.48 0.66 -10.00 16 15 C 0.28 11.19 5.15 132.61 0.68 11.88 16 16 N -0.54 -18.78 8.61 -196.19 -1.69 -20.47 16 17 C 0.34 8.22 12.34 180.33 2.22 10.45 16 18 N -0.61 -15.53 5.24 -323.11 -1.69 -17.23 16 19 H 0.43 7.50 8.91 -92.71 -0.83 6.68 16 20 C 0.51 18.67 7.74 84.80 0.66 19.33 16 21 O -0.60 -24.87 17.38 -5.73 -0.10 -24.97 16 22 C 0.00 -0.15 6.60 38.42 0.25 0.10 16 23 N -0.85 -31.87 8.09 -49.73 -0.40 -32.27 16 24 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.45 6.59 -2.38 -0.02 1.43 16 29 H 0.08 2.99 7.44 -2.39 -0.02 2.98 16 30 H 0.06 2.47 6.35 -2.39 -0.02 2.45 16 31 H 0.04 1.94 4.93 -2.39 -0.01 1.93 16 32 H 0.04 1.78 5.77 -2.39 -0.01 1.77 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.26 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.40 14.04 8.40 -92.70 -0.78 13.26 16 36 H 0.41 14.77 6.76 -92.71 -0.63 14.14 16 Total: -1.00 -75.61 297.75 -0.52 -76.13 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -1.12 Total: 36.92 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 6.86 Total: 29.91 kcal Atomic # 7 Polarization: -141.66 SS G_CDS: -6.45 Total: -148.11 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.68 Total: -39.41 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.57 kcal Total: -75.61 -0.52 -76.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163433857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.663 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds