Wall clock time and date at job start Mon Mar 30 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53235 * 109.62184 * 299.07874 * 16 14 13 18 18 C 1.50588 * 109.15269 * 184.64669 * 17 16 14 19 19 O 1.21234 * 119.35960 * 209.11461 * 18 17 16 20 20 N 1.34137 * 121.28108 * 29.10949 * 18 17 16 21 21 C 1.34137 * 122.58865 * 359.45540 * 20 18 17 22 22 O 1.21224 * 119.36404 * 180.54478 * 21 20 18 23 23 C 1.50589 * 121.28015 * 0.52705 * 21 20 18 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 30 30 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 31 31 H 1.08999 * 109.61898 * 59.63511 * 16 14 13 32 32 H 1.08998 * 109.52651 * 304.56297 * 17 16 14 33 33 H 1.09003 * 109.52731 * 64.75956 * 17 16 14 34 34 H 0.97002 * 118.70980 * 179.43905 * 20 18 17 35 35 H 1.08999 * 109.52617 * 211.02237 * 23 21 20 36 36 H 1.08992 * 109.52339 * 90.82964 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 1.0276 4.4881 -2.9692 18 6 0.5681 5.2191 -4.2029 19 8 1.3854 5.7823 -4.8991 20 7 -0.7278 5.2592 -4.5466 21 6 -1.6845 4.6504 -3.8301 22 8 -2.8370 4.7162 -4.2001 23 6 -1.3545 3.8863 -2.5751 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8117 0.4042 0.4384 30 1 2.2954 2.1150 -1.9977 31 1 0.1146 2.6036 -3.4994 32 1 1.0323 5.1723 -2.1207 33 1 2.0330 4.0988 -3.1299 34 1 -0.9834 5.7478 -5.3447 35 1 -2.0601 3.0646 -2.4527 36 1 -1.4179 4.5532 -1.7153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183864195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:54 Heat of formation + Delta-G solvation = -125.141635 kcal Electronic energy + Delta-G solvation = -20892.849062 eV Core-core repulsion = 17569.459829 eV Total energy + Delta-G solvation = -3323.389234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76524 -39.48837 -39.06030 -35.90541 -35.25140 -33.97787 -32.53582 -31.42512 -29.04629 -27.47632 -25.04765 -23.43205 -22.43836 -20.68126 -19.72960 -19.54860 -18.09776 -17.91617 -17.45043 -16.76299 -15.90866 -15.59262 -15.32969 -14.89824 -14.59118 -14.49123 -13.87135 -13.71567 -13.37449 -12.72112 -12.62867 -12.53788 -12.30354 -11.83013 -11.64640 -11.46026 -11.05166 -10.85629 -10.77162 -10.53520 -10.50847 -10.46265 -9.94565 -9.88539 -9.38284 -9.25741 -8.33268 -8.26282 -6.68703 -4.28743 1.22266 2.46759 2.49865 2.91133 3.34730 3.40426 3.53044 3.59815 3.73335 4.19480 4.37141 4.38494 4.54855 4.72262 5.00510 5.10960 5.22587 5.32312 5.54560 5.65472 5.73569 5.97968 6.01151 6.18456 6.53879 6.58866 6.70872 6.84531 6.93544 7.06113 7.23017 7.28004 7.53344 7.55641 8.16576 8.28973 8.57295 8.78894 9.36488 10.69309 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.005138 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.182817 B = 5447.957219 C = 6057.678353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.632 4.632 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.884 5.884 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.695 5.695 14 C 0.509 3.491 15 O -0.541 6.541 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.531 3.469 19 O -0.501 6.501 20 N -0.677 5.677 21 C 0.528 3.472 22 O -0.503 6.503 23 C -0.122 4.122 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.272 0.728 30 H 0.394 0.606 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.411 0.589 35 H 0.122 0.878 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 5.456 -8.516 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.060 0.940 5 C -0.669 4.669 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.515 5.515 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.342 5.342 14 C 0.293 3.707 15 O -0.420 6.420 16 C -0.138 4.138 17 C -0.176 4.176 18 C 0.319 3.681 19 O -0.373 6.373 20 N -0.342 5.342 21 C 0.317 3.683 22 O -0.376 6.376 23 C -0.161 4.161 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.227 0.773 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.250 0.750 35 H 0.140 0.860 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.499 5.324 -6.565 13.479 hybrid contribution 0.177 0.502 -2.457 2.514 sum -10.322 5.826 -9.021 14.895 Atomic orbital electron populations 1.21898 0.97390 0.98999 1.01877 1.22244 0.93673 0.99691 1.01528 1.19061 0.95919 0.88522 0.81784 0.94000 1.21955 0.89595 1.50414 1.04937 0.91867 1.25597 0.96580 0.91621 1.02083 1.70868 1.13885 1.36095 1.30660 0.84230 0.76066 0.77621 0.76511 1.20840 1.20660 1.19916 1.46306 1.14166 1.55398 1.18371 1.19880 0.83104 0.79631 0.88126 1.90709 1.50562 1.59912 1.40777 1.21561 0.94581 0.97934 0.99729 1.21976 1.01800 0.97663 0.96116 1.20897 0.81136 0.79239 0.86792 1.90808 1.51902 1.42741 1.51851 1.44912 1.08928 1.50946 1.29448 1.21074 0.84560 0.77546 0.85072 1.90789 1.19542 1.58434 1.68831 1.21773 0.97388 1.02039 0.94935 0.95043 0.92941 0.93359 0.93121 0.91786 0.91778 0.77304 0.87347 0.86108 0.85890 0.74970 0.85966 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.53 37.16 0.32 -2.33 16 2 C -0.13 -2.72 5.37 -26.73 -0.14 -2.87 16 3 C 0.25 5.37 1.84 -69.09 -0.13 5.25 16 4 H 0.04 0.99 6.12 -51.93 -0.32 0.67 16 5 C -0.63 -15.76 8.92 -34.44 -0.31 -16.07 16 6 H 0.06 1.65 7.96 -52.49 -0.42 1.23 16 7 C 0.05 1.32 5.15 -17.82 -0.09 1.23 16 8 N -0.88 -25.00 13.70 55.43 0.76 -24.24 16 9 Si 1.03 23.69 26.56 -169.99 -4.51 19.18 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -5.95 6.34 56.52 0.36 -5.59 16 13 N -0.70 -11.68 4.94 -54.93 -0.27 -11.95 16 14 C 0.51 7.55 5.76 -10.98 -0.06 7.48 16 15 O -0.54 -9.71 13.09 5.55 0.07 -9.64 16 16 C -0.12 -1.16 2.66 -91.52 -0.24 -1.41 16 17 C -0.14 -1.25 5.24 -27.82 -0.15 -1.40 16 18 C 0.53 5.36 7.74 -11.33 -0.09 5.27 16 19 O -0.50 -6.69 17.88 5.60 0.10 -6.59 16 20 N -0.68 -6.15 5.09 -11.75 -0.06 -6.21 16 21 C 0.53 5.39 7.74 -11.33 -0.09 5.30 16 22 O -0.50 -6.72 17.87 5.61 0.10 -6.62 16 23 C -0.12 -1.18 4.70 -27.81 -0.13 -1.31 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.01 7.89 -51.93 -0.41 0.60 16 26 H 0.05 0.84 5.63 -51.93 -0.29 0.55 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.41 5.77 -51.93 -0.30 1.11 16 29 H 0.27 7.60 8.73 -40.82 -0.36 7.25 16 30 H 0.39 5.81 8.12 -40.82 -0.33 5.47 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.12 1.09 7.78 -51.93 -0.40 0.69 16 34 H 0.41 3.34 8.79 -40.82 -0.36 2.98 16 35 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.12 1.17 7.98 -51.93 -0.41 0.76 16 LS Contribution 298.80 15.07 4.50 4.50 Total: -1.00 -31.19 298.80 -4.98 -36.17 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.55 Total: 6.25 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.11 Total: -0.84 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.43 Total: -42.41 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.27 Total: -22.85 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.51 Total: 19.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.19 -4.98 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183864195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.976 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds