Wall clock time and date at job start Mon Mar 30 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53235 * 109.62184 * 299.07874 * 16 14 13 18 18 C 1.50588 * 109.15269 * 184.64669 * 17 16 14 19 19 O 1.21234 * 119.35960 * 209.11461 * 18 17 16 20 20 N 1.34137 * 121.28108 * 29.10949 * 18 17 16 21 21 C 1.34137 * 122.58865 * 359.45540 * 20 18 17 22 22 O 1.21224 * 119.36404 * 180.54478 * 21 20 18 23 23 C 1.50589 * 121.28015 * 0.52705 * 21 20 18 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 30 30 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 31 31 H 1.08999 * 109.61898 * 59.63511 * 16 14 13 32 32 H 1.08998 * 109.52651 * 304.56297 * 17 16 14 33 33 H 1.09003 * 109.52731 * 64.75956 * 17 16 14 34 34 H 0.97002 * 118.70980 * 179.43905 * 20 18 17 35 35 H 1.08999 * 109.52617 * 211.02237 * 23 21 20 36 36 H 1.08992 * 109.52339 * 90.82964 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 1.0276 4.4881 -2.9692 18 6 0.5681 5.2191 -4.2029 19 8 1.3854 5.7823 -4.8991 20 7 -0.7278 5.2592 -4.5466 21 6 -1.6845 4.6504 -3.8301 22 8 -2.8370 4.7162 -4.2001 23 6 -1.3545 3.8863 -2.5751 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8117 0.4042 0.4384 30 1 2.2954 2.1150 -1.9977 31 1 0.1146 2.6036 -3.4994 32 1 1.0323 5.1723 -2.1207 33 1 2.0330 4.0988 -3.1299 34 1 -0.9834 5.7478 -5.3447 35 1 -2.0601 3.0646 -2.4527 36 1 -1.4179 4.5532 -1.7153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183864195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:53 Heat of formation + Delta-G solvation = -149.647085 kcal Electronic energy + Delta-G solvation = -20893.911698 eV Core-core repulsion = 17569.459829 eV Total energy + Delta-G solvation = -3324.451870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.65060 -40.75616 -39.98279 -37.25196 -36.43597 -34.91722 -34.39892 -32.89672 -29.91049 -29.13625 -26.16117 -24.30040 -24.13912 -22.11532 -21.15764 -20.37579 -19.75836 -18.88760 -18.40445 -17.93991 -17.10736 -16.85882 -16.44834 -15.85695 -15.67779 -15.48912 -15.32142 -14.97715 -14.70108 -14.41435 -14.26219 -13.86993 -13.51160 -13.34616 -12.60282 -12.48125 -12.44595 -12.31616 -12.24024 -11.90483 -11.73221 -11.51824 -11.42230 -11.38363 -11.16968 -10.63628 -10.35437 -9.74464 -8.75364 -6.34782 0.37088 1.51355 1.53332 1.61856 1.67511 1.72889 1.76177 2.41328 2.47776 2.87568 2.99047 3.35197 3.49518 3.63428 3.93677 4.15961 4.38423 4.38708 4.47354 4.54847 4.62406 4.77518 4.88972 4.93203 4.99154 5.17924 5.28424 5.35979 5.61640 5.71570 5.72095 5.77713 6.08882 6.23833 6.61288 6.72362 6.88872 7.33194 7.47185 8.61494 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.005138 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.182817 B = 5447.957219 C = 6057.678353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 C 0.255 3.745 4 H 0.027 0.973 5 C -0.623 4.623 6 H 0.044 0.956 7 C 0.006 3.994 8 N -0.920 5.920 9 Si 1.060 2.940 10 H -0.288 1.288 11 H -0.271 1.271 12 H -0.255 1.255 13 N -0.698 5.698 14 C 0.513 3.487 15 O -0.568 6.568 16 C -0.099 4.099 17 C -0.132 4.132 18 C 0.545 3.455 19 O -0.531 6.531 20 N -0.668 5.668 21 C 0.543 3.457 22 O -0.532 6.532 23 C -0.117 4.117 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.404 0.596 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.417 0.583 35 H 0.124 0.876 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 5.737 -9.129 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.170 4.170 3 C 0.150 3.850 4 H 0.044 0.956 5 C -0.661 4.661 6 H 0.062 0.938 7 C -0.197 4.197 8 N -0.554 5.554 9 Si 0.883 3.117 10 H -0.213 1.213 11 H -0.197 1.197 12 H -0.179 1.179 13 N -0.347 5.347 14 C 0.299 3.701 15 O -0.448 6.448 16 C -0.120 4.120 17 C -0.172 4.172 18 C 0.335 3.665 19 O -0.406 6.406 20 N -0.333 5.333 21 C 0.333 3.667 22 O -0.407 6.407 23 C -0.157 4.157 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.239 0.761 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.257 0.743 35 H 0.142 0.858 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.115 5.622 -7.214 15.179 hybrid contribution 0.669 0.458 -2.329 2.466 sum -11.446 6.080 -9.543 16.095 Atomic orbital electron populations 1.21784 0.95350 1.00281 1.01722 1.22142 0.95409 0.98590 1.00812 1.18703 0.93333 0.89460 0.83526 0.95569 1.22164 0.91640 1.48424 1.03823 0.93751 1.26603 0.96649 0.91419 1.05008 1.70962 1.15261 1.39052 1.30080 0.83805 0.75820 0.78377 0.73660 1.21347 1.19658 1.17912 1.46094 1.15487 1.55881 1.17209 1.20470 0.81744 0.78586 0.89266 1.90707 1.51139 1.60656 1.42292 1.21433 0.94731 0.98346 0.97514 1.21985 1.01843 0.97415 0.95962 1.20882 0.80877 0.78418 0.86342 1.90815 1.52688 1.44233 1.52851 1.44798 1.08497 1.50477 1.29480 1.21008 0.83997 0.76898 0.84747 1.90795 1.20768 1.59614 1.69526 1.21748 0.97009 1.02155 0.94756 0.93054 0.94057 0.92496 0.92849 0.93579 0.92914 0.76059 0.84793 0.85247 0.85221 0.74262 0.85783 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.53 71.98 0.61 -3.98 16 2 C -0.13 -5.16 5.37 30.60 0.16 -5.00 16 3 C 0.25 10.62 1.84 44.25 0.08 10.70 16 4 H 0.03 1.20 6.12 -2.39 -0.01 1.19 16 5 C -0.62 -31.02 8.92 25.60 0.23 -30.79 16 6 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 7 C 0.01 0.32 5.15 84.66 0.44 0.76 16 8 N -0.92 -53.00 13.70 21.45 0.29 -52.70 16 9 Si 1.06 47.56 26.56 68.60 1.82 49.39 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.25 -10.56 6.34 99.48 0.63 -9.93 16 13 N -0.70 -22.08 4.94 -446.10 -2.21 -24.28 16 14 C 0.51 13.88 5.76 87.66 0.50 14.38 16 15 O -0.57 -19.04 13.09 -3.04 -0.04 -19.08 16 16 C -0.10 -1.66 2.66 -11.38 -0.03 -1.69 16 17 C -0.13 -2.06 5.24 29.89 0.16 -1.90 16 18 C 0.54 9.65 7.74 87.72 0.68 10.33 16 19 O -0.53 -13.21 17.88 -2.89 -0.05 -13.26 16 20 N -0.67 -10.50 5.09 -428.64 -2.18 -12.69 16 21 C 0.54 9.70 7.74 87.72 0.68 10.37 16 22 O -0.53 -13.14 17.87 -2.86 -0.05 -13.19 16 23 C -0.12 -1.93 4.70 29.90 0.14 -1.79 16 24 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.04 1.50 7.89 -2.39 -0.02 1.48 16 26 H 0.06 1.83 5.63 -2.39 -0.01 1.82 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.97 5.77 -2.39 -0.01 1.96 16 29 H 0.26 15.06 8.73 -92.71 -0.81 14.25 16 30 H 0.40 11.11 8.12 -92.71 -0.75 10.35 16 31 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.13 1.94 7.78 -2.39 -0.02 1.92 16 34 H 0.42 5.90 8.79 -92.71 -0.81 5.08 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.13 2.07 7.98 -2.39 -0.02 2.05 16 Total: -1.00 -66.74 298.80 0.69 -66.06 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.55 Total: 18.36 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 3.65 Total: 1.40 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -4.10 Total: -89.67 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.14 Total: -45.53 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.82 Total: 49.39 kcal Total: -66.74 0.69 -66.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183864195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.592 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds