Wall clock time and date at job start Mon Mar 30 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48509 * 109.46998 * 269.99727 * 3 2 1 5 5 H 1.48504 * 109.47377 * 29.98912 * 3 2 1 6 6 H 1.48490 * 109.47518 * 149.99753 * 3 2 1 7 7 C 1.37876 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99944 * 89.99717 * 10 9 7 12 12 O 1.21588 * 119.99750 * 178.03109 * 11 10 9 13 13 N 1.34771 * 119.99860 * 357.75683 * 11 10 9 14 14 C 1.46508 * 119.99759 * 179.00040 * 13 11 10 15 15 C 1.50698 * 115.54751 * 36.46772 * 14 13 11 16 16 O 1.20824 * 120.00146 * 212.15250 * 15 14 13 17 17 O 1.34234 * 120.00061 * 32.15820 * 15 14 13 18 18 C 1.52994 * 117.50068 * 250.75649 * 14 13 11 19 19 C 1.53002 * 60.00240 * 252.51567 * 18 14 13 20 20 C 1.46497 * 120.00190 * 269.99851 * 10 9 7 21 21 C 1.52998 * 117.50180 * 203.48764 * 20 10 9 22 22 C 1.52995 * 117.50022 * 134.82601 * 20 10 9 23 23 H 0.96990 * 120.00498 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47261 * 59.99397 * 9 7 2 25 25 H 1.09002 * 109.46969 * 299.99375 * 9 7 2 26 26 H 0.97005 * 120.00561 * 359.00180 * 13 11 10 27 27 H 0.96696 * 116.99722 * 179.97438 * 17 15 14 28 28 H 1.09008 * 117.50037 * 0.02562 * 18 14 13 29 29 H 1.08997 * 117.49883 * 145.02194 * 18 14 13 30 30 H 1.09001 * 117.49775 * 252.51534 * 19 18 14 31 31 H 1.08999 * 117.49932 * 107.49155 * 19 18 14 32 32 H 1.09001 * 115.54639 * 349.15357 * 20 10 9 33 33 H 1.09003 * 117.49596 * 359.97438 * 21 20 10 34 34 H 1.08999 * 117.50327 * 145.01979 * 21 20 10 35 35 H 1.08998 * 117.49908 * 214.98308 * 22 20 10 36 36 H 1.09004 * 117.49956 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6998 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.6413 -4.1247 1.1678 12 8 3.4036 -5.0719 1.1681 13 7 2.2386 -3.5834 2.3345 14 6 2.6973 -4.1538 3.6036 15 6 4.1148 -4.6653 3.6116 16 8 4.4120 -5.6107 4.3027 17 8 5.0473 -4.0704 2.8511 18 6 1.6700 -4.9048 4.4529 19 6 2.1654 -3.5259 4.8935 20 6 2.6793 -4.1693 -1.2681 21 6 3.1983 -5.6086 -1.2576 22 6 4.1788 -4.4420 -1.4016 23 1 -0.4850 0.8399 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6243 -2.5568 0.8904 26 1 1.6450 -2.8162 2.3340 27 1 5.9426 -4.4337 2.8898 28 1 0.6528 -4.9749 4.0673 29 1 2.0192 -5.7692 5.0177 30 1 2.8407 -3.4831 5.7481 31 1 1.4742 -2.6885 4.7979 32 1 2.1478 -3.8325 -2.1582 33 1 3.1860 -6.1410 -0.3066 34 1 3.0087 -6.2185 -2.1408 35 1 4.6339 -4.2849 -2.3795 36 1 4.8113 -4.2067 -0.5456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203515195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:45 Heat of formation + Delta-G solvation = -46.872114 kcal Electronic energy + Delta-G solvation = -21498.094567 eV Core-core repulsion = 18178.099355 eV Total energy + Delta-G solvation = -3319.995213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54126 -39.38964 -37.29250 -35.94372 -35.28453 -34.35347 -32.46871 -31.27068 -27.10484 -25.10267 -23.08405 -22.57722 -22.43536 -21.73274 -20.19368 -19.32674 -17.86023 -16.91270 -16.77575 -16.53519 -15.70858 -15.12561 -14.72208 -14.49755 -14.40488 -14.20955 -13.90228 -13.03341 -12.69782 -12.44429 -12.21154 -11.66616 -11.59053 -11.36649 -11.16208 -11.12493 -11.03655 -10.86660 -10.74204 -10.51565 -10.27625 -10.21789 -9.66901 -9.60770 -9.06179 -8.63014 -8.52093 -7.45215 -6.23031 -4.31219 2.35604 3.10403 3.19958 3.20140 3.27502 3.32538 3.65163 4.00776 4.26406 4.47112 4.67607 4.73534 4.87289 5.09219 5.19933 5.49806 5.54666 5.59060 5.72081 5.74084 5.84962 6.05352 6.23134 6.26554 6.57000 6.74310 6.79928 6.87013 7.02389 7.09873 7.39702 7.72488 7.79084 7.99064 8.24767 8.57605 8.82980 9.28251 9.38936 10.82575 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.007683 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.201108 B = 3643.529053 C = 4531.477732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.242 3.758 10 N -0.584 5.584 11 C 0.717 3.283 12 O -0.601 6.601 13 N -0.703 5.703 14 C 0.116 3.884 15 C 0.541 3.459 16 O -0.529 6.529 17 O -0.489 6.489 18 C -0.154 4.154 19 C -0.151 4.151 20 C 0.109 3.891 21 C -0.200 4.200 22 C -0.189 4.189 23 H 0.265 0.735 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.416 0.584 27 H 0.403 0.597 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -5.766 5.103 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.122 3.878 10 N -0.315 5.315 11 C 0.420 3.580 12 O -0.483 6.483 13 N -0.362 5.362 14 C 0.025 3.975 15 C 0.384 3.616 16 O -0.418 6.418 17 O -0.298 6.298 18 C -0.193 4.193 19 C -0.189 4.189 20 C 0.003 3.997 21 C -0.238 4.238 22 C -0.228 4.228 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.256 0.744 27 H 0.261 0.739 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.110 -6.351 5.221 8.791 hybrid contribution 0.701 1.332 -0.202 1.519 sum 3.811 -5.019 5.019 8.056 Atomic orbital electron populations 1.69918 1.05974 1.27387 1.49844 1.24953 0.94849 0.99332 0.94720 0.86496 0.79873 0.82796 0.78338 1.20517 1.21125 1.19742 1.21556 0.93838 0.90297 1.51815 0.91827 1.19353 0.87297 0.82791 0.98388 1.46729 1.46968 1.35826 1.02023 1.15707 0.80042 0.81836 0.80412 1.90683 1.40842 1.30874 1.85891 1.44533 1.53985 1.36021 1.01660 1.19529 0.88395 1.04871 0.84745 1.21618 0.86228 0.79206 0.74593 1.90658 1.81607 1.27302 1.42256 1.84584 1.22564 1.59344 1.63278 1.23589 0.98859 0.95986 1.00868 1.23456 1.03066 0.98030 0.94372 1.21296 0.95095 0.96276 0.87058 1.23747 1.03977 0.91966 1.04147 1.23163 0.93852 1.03734 1.02021 0.92490 0.94270 0.95070 0.74394 0.73919 0.87027 0.86885 0.87217 0.86511 0.85758 0.85362 0.90381 0.89767 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.29 55.43 0.74 -23.00 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.58 9.38 -34.44 -0.32 -13.91 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.24 5.57 4.91 -5.20 -0.03 5.54 16 10 N -0.58 -12.34 2.84 -173.18 -0.49 -12.83 16 11 C 0.72 14.97 7.51 -86.92 -0.65 14.32 16 12 O -0.60 -13.03 9.38 -15.69 -0.15 -13.18 16 13 N -0.70 -13.05 5.40 -53.50 -0.29 -13.34 16 14 C 0.12 1.88 2.88 -132.97 -0.38 1.50 16 15 C 0.54 9.54 6.28 36.00 0.23 9.77 16 16 O -0.53 -9.91 17.02 -18.75 -0.32 -10.23 16 17 O -0.49 -8.25 11.74 -46.29 -0.54 -8.79 16 18 C -0.15 -2.02 9.97 -26.73 -0.27 -2.29 16 19 C -0.15 -1.84 10.13 -26.73 -0.27 -2.11 16 20 C 0.11 2.08 6.63 -67.94 -0.45 1.63 16 21 C -0.20 -3.52 9.66 -26.70 -0.26 -3.78 16 22 C -0.19 -3.40 9.82 -26.70 -0.26 -3.66 16 23 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.04 0.95 8.03 -51.93 -0.42 0.53 16 25 H 0.03 0.73 6.48 -51.93 -0.34 0.39 16 26 H 0.42 7.78 6.57 -40.82 -0.27 7.51 16 27 H 0.40 4.92 9.10 45.56 0.41 5.33 16 28 H 0.11 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.11 1.46 7.67 -51.93 -0.40 1.06 16 30 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.12 2.22 8.09 -51.93 -0.42 1.80 16 33 H 0.13 2.57 5.45 -51.93 -0.28 2.28 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.10 1.94 7.29 -51.93 -0.38 1.56 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -30.33 308.67 -7.93 -38.26 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -3.75 Total: 14.69 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -2.76 Total: 8.56 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.04 Total: -49.17 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.01 Total: -32.20 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.33 -7.93 -38.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203515195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.608 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds