Wall clock time and date at job start Mon Mar 30 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48509 * 109.46998 * 269.99727 * 3 2 1 5 5 H 1.48504 * 109.47377 * 29.98912 * 3 2 1 6 6 H 1.48490 * 109.47518 * 149.99753 * 3 2 1 7 7 C 1.37876 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99944 * 89.99717 * 10 9 7 12 12 O 1.21588 * 119.99750 * 178.03109 * 11 10 9 13 13 N 1.34771 * 119.99860 * 357.75683 * 11 10 9 14 14 C 1.46508 * 119.99759 * 179.00040 * 13 11 10 15 15 C 1.50698 * 115.54751 * 36.46772 * 14 13 11 16 16 O 1.20824 * 120.00146 * 212.15250 * 15 14 13 17 17 O 1.34234 * 120.00061 * 32.15820 * 15 14 13 18 18 C 1.52994 * 117.50068 * 250.75649 * 14 13 11 19 19 C 1.53002 * 60.00240 * 252.51567 * 18 14 13 20 20 C 1.46497 * 120.00190 * 269.99851 * 10 9 7 21 21 C 1.52998 * 117.50180 * 203.48764 * 20 10 9 22 22 C 1.52995 * 117.50022 * 134.82601 * 20 10 9 23 23 H 0.96990 * 120.00498 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47261 * 59.99397 * 9 7 2 25 25 H 1.09002 * 109.46969 * 299.99375 * 9 7 2 26 26 H 0.97005 * 120.00561 * 359.00180 * 13 11 10 27 27 H 0.96696 * 116.99722 * 179.97438 * 17 15 14 28 28 H 1.09008 * 117.50037 * 0.02562 * 18 14 13 29 29 H 1.08997 * 117.49883 * 145.02194 * 18 14 13 30 30 H 1.09001 * 117.49775 * 252.51534 * 19 18 14 31 31 H 1.08999 * 117.49932 * 107.49155 * 19 18 14 32 32 H 1.09001 * 115.54639 * 349.15357 * 20 10 9 33 33 H 1.09003 * 117.49596 * 359.97438 * 21 20 10 34 34 H 1.08999 * 117.50327 * 145.01979 * 21 20 10 35 35 H 1.08998 * 117.49908 * 214.98308 * 22 20 10 36 36 H 1.09004 * 117.49956 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6998 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.6413 -4.1247 1.1678 12 8 3.4036 -5.0719 1.1681 13 7 2.2386 -3.5834 2.3345 14 6 2.6973 -4.1538 3.6036 15 6 4.1148 -4.6653 3.6116 16 8 4.4120 -5.6107 4.3027 17 8 5.0473 -4.0704 2.8511 18 6 1.6700 -4.9048 4.4529 19 6 2.1654 -3.5259 4.8935 20 6 2.6793 -4.1693 -1.2681 21 6 3.1983 -5.6086 -1.2576 22 6 4.1788 -4.4420 -1.4016 23 1 -0.4850 0.8399 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6243 -2.5568 0.8904 26 1 1.6450 -2.8162 2.3340 27 1 5.9426 -4.4337 2.8898 28 1 0.6528 -4.9749 4.0673 29 1 2.0192 -5.7692 5.0177 30 1 2.8407 -3.4831 5.7481 31 1 1.4742 -2.6885 4.7979 32 1 2.1478 -3.8325 -2.1582 33 1 3.1860 -6.1410 -0.3066 34 1 3.0087 -6.2185 -2.1408 35 1 4.6339 -4.2849 -2.3795 36 1 4.8113 -4.2067 -0.5456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203515195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:45 Heat of formation + Delta-G solvation = -66.160802 kcal Electronic energy + Delta-G solvation = -21498.930988 eV Core-core repulsion = 18178.099355 eV Total energy + Delta-G solvation = -3320.831633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92602 -40.87639 -38.55755 -37.36152 -36.72137 -36.03814 -34.28680 -32.75143 -28.97756 -26.39934 -24.89582 -23.99512 -23.58787 -23.16150 -21.54942 -20.76516 -19.24571 -18.70427 -18.29049 -18.14258 -17.17874 -16.51433 -16.33410 -16.06603 -15.92260 -15.61170 -15.08138 -14.58382 -14.36839 -13.92030 -13.84296 -13.45161 -13.00062 -12.69878 -12.61843 -12.53315 -12.43227 -12.35717 -12.23700 -12.14161 -11.97026 -11.50137 -11.42465 -11.14492 -10.69790 -10.53388 -9.94208 -9.08008 -8.17980 -6.33483 1.04559 1.41733 1.45091 1.53678 1.70581 1.99853 2.19054 2.41036 2.78890 2.95573 3.10683 3.22875 3.53468 3.79250 4.03995 4.13166 4.17414 4.30550 4.48605 4.60373 4.76901 4.84848 4.88866 4.93824 5.07820 5.11032 5.18390 5.43082 5.54295 5.62160 5.70165 5.85597 6.05649 6.19072 6.70831 6.99626 7.07537 7.39249 7.71794 8.85372 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.007683 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.201108 B = 3643.529053 C = 4531.477732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.047 0.953 9 C 0.257 3.743 10 N -0.591 5.591 11 C 0.709 3.291 12 O -0.613 6.613 13 N -0.700 5.700 14 C 0.073 3.927 15 C 0.538 3.462 16 O -0.547 6.547 17 O -0.501 6.501 18 C -0.141 4.141 19 C -0.122 4.122 20 C 0.085 3.915 21 C -0.183 4.183 22 C -0.183 4.183 23 H 0.268 0.732 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.414 0.586 27 H 0.419 0.581 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -5.396 5.369 8.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.065 0.935 9 C 0.136 3.864 10 N -0.322 5.322 11 C 0.411 3.589 12 O -0.496 6.496 13 N -0.357 5.357 14 C -0.018 4.018 15 C 0.382 3.618 16 O -0.439 6.439 17 O -0.312 6.312 18 C -0.180 4.180 19 C -0.160 4.160 20 C -0.021 4.021 21 C -0.221 4.221 22 C -0.222 4.222 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.253 0.747 27 H 0.279 0.721 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.142 -5.993 5.501 8.720 hybrid contribution 0.731 1.177 -0.276 1.412 sum 3.873 -4.816 5.225 8.093 Atomic orbital electron populations 1.69987 1.06946 1.28192 1.50428 1.25556 0.95507 1.01925 0.94417 0.85624 0.78608 0.79598 0.78212 1.20362 1.20416 1.20012 1.21621 0.93064 0.91527 1.51769 0.93461 1.19022 0.87218 0.82740 0.97445 1.46721 1.46941 1.35539 1.03036 1.15899 0.80163 0.81903 0.80886 1.90677 1.41381 1.31374 1.86200 1.44498 1.53555 1.35675 1.02002 1.19955 0.88389 1.08292 0.85136 1.21930 0.86824 0.78898 0.74149 1.90636 1.82092 1.27999 1.43140 1.84561 1.23775 1.59642 1.63197 1.23661 0.98275 0.96759 0.99317 1.23649 1.02299 0.97859 0.92165 1.21598 0.96051 0.97661 0.86758 1.23647 1.02859 0.91287 1.04273 1.23139 0.92923 1.03786 1.02354 0.92250 0.95734 0.95299 0.74689 0.72137 0.86041 0.86607 0.85388 0.84948 0.84711 0.87733 0.87242 0.87061 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.24 13.29 21.45 0.28 -47.95 16 2 C 0.03 1.35 5.46 84.65 0.46 1.82 16 3 Si 0.95 40.93 29.54 68.60 2.03 42.95 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -27.40 9.38 25.60 0.24 -27.16 16 8 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 9 C 0.26 11.90 4.91 85.63 0.42 12.32 16 10 N -0.59 -25.06 2.84 -820.07 -2.33 -27.39 16 11 C 0.71 29.74 7.51 179.05 1.35 31.09 16 12 O -0.61 -26.82 9.38 16.06 0.15 -26.67 16 13 N -0.70 -25.81 5.40 -441.44 -2.38 -28.19 16 14 C 0.07 2.29 2.88 2.85 0.01 2.30 16 15 C 0.54 18.80 6.28 71.24 0.45 19.25 16 16 O -0.55 -20.31 17.02 21.97 0.37 -19.94 16 17 O -0.50 -16.95 11.74 -44.75 -0.53 -17.48 16 18 C -0.14 -3.47 9.97 30.59 0.30 -3.17 16 19 C -0.12 -2.69 10.13 30.60 0.31 -2.38 16 20 C 0.08 3.19 6.63 44.99 0.30 3.48 16 21 C -0.18 -6.21 9.66 30.62 0.30 -5.91 16 22 C -0.18 -6.43 9.82 30.62 0.30 -6.13 16 23 H 0.27 13.43 8.31 -92.72 -0.77 12.65 16 24 H 0.02 1.20 8.03 -2.39 -0.02 1.18 16 25 H 0.03 1.35 6.48 -2.39 -0.02 1.34 16 26 H 0.41 15.39 6.57 -92.70 -0.61 14.78 16 27 H 0.42 10.29 9.10 -74.06 -0.67 9.62 16 28 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.12 2.80 7.67 -2.39 -0.02 2.78 16 30 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.14 4.69 8.09 -2.39 -0.02 4.67 16 33 H 0.10 4.15 5.45 -2.39 -0.01 4.14 16 34 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.07 2.86 7.29 -2.38 -0.02 2.84 16 Total: -1.00 -63.90 308.67 1.88 -62.02 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.16 Total: 37.14 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: 4.43 Total: 25.50 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -4.43 Total: -103.53 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: 0.00 Total: -64.09 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -63.90 1.88 -62.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203515195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.138 kcal (2) G-P(sol) polarization free energy of solvation -63.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds