Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47384 * 2 1 4 4 N 1.46899 * 109.47202 * 120.00492 * 2 1 3 5 5 C 1.46894 * 110.99927 * 56.58881 * 4 2 1 6 6 C 1.50696 * 109.47473 * 58.92735 * 5 4 2 7 7 H 1.07998 * 120.00037 * 5.12220 * 6 5 4 8 8 C 1.37877 * 120.00135 * 185.11718 * 6 5 4 9 9 N 1.31513 * 119.99902 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00225 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47408 * 89.99701 * 10 8 6 12 12 H 1.48498 * 109.47107 * 210.00410 * 10 8 6 13 13 H 1.48511 * 109.46909 * 330.00052 * 10 8 6 14 14 C 1.39986 * 110.99962 * 180.54159 * 4 2 1 15 15 N 1.31230 * 125.97597 * 338.63841 * 14 4 2 16 16 N 1.40079 * 108.16905 * 179.97438 * 15 14 4 17 17 C 1.46493 * 125.96770 * 179.97438 * 16 15 14 18 18 C 1.34959 * 108.05661 * 0.26091 * 16 15 14 19 19 C 1.35251 * 107.86168 * 359.57846 * 18 16 15 20 20 N 1.48020 * 126.07101 * 180.16305 * 19 18 16 21 21 O 1.21809 * 119.99704 * 0.49786 * 20 19 18 22 22 O 1.21795 * 120.00430 * 180.49793 * 20 19 18 23 23 H 1.08994 * 109.47215 * 304.32663 * 1 2 3 24 24 H 1.09008 * 109.47037 * 64.32642 * 1 2 3 25 25 H 1.09001 * 109.46920 * 184.32245 * 1 2 3 26 26 H 1.09006 * 109.47060 * 240.00723 * 2 1 3 27 27 H 1.08996 * 109.47617 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47367 * 300.00833 * 3 2 1 29 29 H 1.09003 * 109.46586 * 59.99822 * 3 2 1 30 30 H 1.09001 * 109.46848 * 178.93338 * 5 4 2 31 31 H 1.09000 * 109.47033 * 298.92596 * 5 4 2 32 32 H 0.97007 * 120.00000 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47304 * 90.02605 * 17 16 15 34 34 H 1.09004 * 109.46879 * 210.02175 * 17 16 15 35 35 H 1.08999 * 109.47742 * 330.02747 * 17 16 15 36 36 H 1.07995 * 126.07209 * 179.73783 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4832 -2.0580 1.2747 6 6 1.8928 -2.8272 0.0453 7 1 2.5594 -2.3778 -0.6758 8 6 1.4165 -4.1049 -0.1590 9 7 0.6044 -4.6521 0.7189 10 14 1.9248 -5.0587 -1.6825 11 1 3.1591 -5.8321 -1.3936 12 1 0.8355 -5.9911 -2.0691 13 1 2.1837 -4.1111 -2.7963 14 6 3.4190 -0.7006 1.2379 15 7 4.2194 -0.5420 0.2101 16 7 5.5405 -0.6147 0.6700 17 6 6.7461 -0.4890 -0.1527 18 6 5.5085 -0.8273 2.0024 19 6 4.2117 -0.8790 2.3832 20 7 3.7160 -1.0922 3.7615 21 8 4.5061 -1.2316 4.6781 22 8 2.5182 -1.1283 3.9792 23 1 -0.3633 0.5795 0.8486 24 1 -0.3633 0.4453 -0.9263 25 1 -0.3633 -1.0248 0.0775 26 1 1.8933 -0.5137 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.8765 -2.5544 2.1618 31 1 0.3955 -2.0183 1.3328 32 1 0.2690 -5.5509 0.5750 33 1 7.0466 0.5578 -0.1993 34 1 7.5500 -1.0785 0.2883 35 1 6.5389 -0.8525 -1.1591 36 1 6.3661 -0.9342 2.6500 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231665821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = 88.306886 kcal Electronic energy + Delta-G solvation = -21718.676649 eV Core-core repulsion = 18436.835988 eV Total energy + Delta-G solvation = -3281.840660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83734 -40.69790 -37.68219 -35.67267 -33.22900 -32.86378 -30.87217 -30.62233 -27.85373 -26.67134 -25.98812 -24.50587 -22.61038 -21.57328 -20.69853 -19.03502 -18.37686 -17.69226 -16.86372 -16.52746 -15.97095 -15.65344 -15.27009 -14.94096 -14.16406 -13.85395 -13.43304 -13.10948 -12.71546 -12.39627 -11.95267 -11.74520 -11.47404 -11.38282 -11.19598 -10.95970 -10.79713 -10.67104 -10.50302 -10.36019 -10.27167 -10.13126 -10.03186 -9.81648 -9.26567 -8.98063 -8.50275 -7.58782 -6.11438 -4.20025 0.88062 1.82150 1.97665 2.66898 2.92132 3.21175 3.28504 3.31397 4.22697 4.33712 4.41914 4.66236 4.93832 5.08918 5.21214 5.22416 5.41859 5.53129 5.67977 5.79408 6.03332 6.19613 6.36466 6.45587 6.46568 6.60130 6.87628 6.93513 7.06579 7.15512 7.41795 7.50498 7.77554 7.84950 8.07946 8.15218 8.49265 8.88118 9.46131 10.94923 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.008191 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.383983 B = 3417.596875 C = 3482.242883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 C -0.147 4.147 4 N -0.449 5.449 5 C 0.195 3.805 6 C -0.557 4.557 7 H 0.064 0.936 8 C 0.070 3.930 9 N -0.884 5.884 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.356 3.644 15 N -0.310 5.310 16 N -0.353 5.353 17 C 0.102 3.898 18 C 0.143 3.857 19 C -0.184 4.184 20 N 0.076 4.924 21 O -0.220 6.220 22 O -0.128 6.128 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.132 9.431 -1.863 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 C -0.205 4.205 4 N -0.172 5.172 5 C 0.072 3.928 6 C -0.596 4.596 7 H 0.082 0.918 8 C -0.134 4.134 9 N -0.521 5.521 10 Si 0.717 3.283 11 H -0.208 1.208 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.097 3.903 15 N -0.137 5.137 16 N -0.132 5.132 17 C -0.038 4.038 18 C -0.013 4.013 19 C -0.284 4.284 20 N 0.590 4.410 21 O -0.420 6.420 22 O -0.352 6.352 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.330 9.821 -3.363 14.645 hybrid contribution 0.512 -1.333 -0.301 1.459 sum 10.841 8.489 -3.664 14.248 Atomic orbital electron populations 1.21835 0.94041 1.03592 1.00476 1.21492 0.95801 0.92970 0.92084 1.21939 1.01055 0.96419 1.01110 1.60522 0.97423 1.21628 1.37632 1.20002 0.97099 0.78572 0.97147 1.21775 1.29947 1.00299 1.07582 0.91800 1.24904 0.94707 0.97402 0.96392 1.69947 1.31862 1.15397 1.34926 0.86630 0.78258 0.79934 0.83437 1.20843 1.20927 1.19864 1.20666 0.92314 0.90259 0.87071 1.78120 0.85017 1.31339 1.19231 1.48277 1.07098 1.52905 1.04918 1.22016 0.81954 1.03461 0.96413 1.22041 0.97478 0.95211 0.86529 1.20842 0.93383 1.29857 0.84329 1.42322 1.00677 0.96912 1.01067 1.94444 1.53764 1.56799 1.36957 1.94602 0.98233 1.52894 1.89424 0.92785 0.93133 0.90436 0.91578 0.92900 0.92713 0.92748 0.94325 0.92144 0.92593 0.90070 0.88905 0.88454 0.78724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.99 37.16 0.33 -2.27 16 2 C 0.08 1.66 1.96 -67.71 -0.13 1.53 16 3 C -0.15 -2.46 9.02 37.16 0.33 -2.13 16 4 N -0.45 -9.97 4.05 -166.58 -0.67 -10.64 16 5 C 0.19 5.02 4.24 -4.98 -0.02 4.99 16 6 C -0.56 -15.11 7.77 -34.44 -0.27 -15.38 16 7 H 0.06 1.75 6.17 -52.49 -0.32 1.42 16 8 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 9 N -0.88 -25.65 13.29 55.43 0.74 -24.91 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.36 7.50 4.41 -154.54 -0.68 6.82 16 15 N -0.31 -5.90 10.00 31.41 0.31 -5.58 16 16 N -0.35 -5.09 4.01 -68.18 -0.27 -5.37 16 17 C 0.10 0.84 11.47 59.84 0.69 1.53 16 18 C 0.14 2.11 11.16 -17.24 -0.19 1.92 16 19 C -0.18 -3.63 7.10 -80.18 -0.57 -4.20 16 20 N 0.08 1.61 4.45 33.85 0.15 1.76 16 21 O -0.22 -4.44 19.02 -29.46 -0.56 -5.00 16 22 O -0.13 -2.96 16.92 -29.46 -0.50 -3.46 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 25 H 0.08 1.62 6.13 -51.93 -0.32 1.30 16 26 H 0.07 1.45 6.41 -51.93 -0.33 1.12 16 27 H 0.05 0.91 6.21 -51.93 -0.32 0.58 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 1.10 6.90 -51.93 -0.36 0.75 16 31 H 0.06 1.63 6.21 -51.93 -0.32 1.30 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -32.86 305.57 -6.32 -39.19 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.49 Total: -1.58 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.61 Total: -5.35 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.25 Total: -44.75 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.06 Total: -8.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.86 -6.32 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231665821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.493 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds