Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47384 * 2 1 4 4 N 1.46899 * 109.47202 * 120.00492 * 2 1 3 5 5 C 1.46894 * 110.99927 * 56.58881 * 4 2 1 6 6 C 1.50696 * 109.47473 * 58.92735 * 5 4 2 7 7 H 1.07998 * 120.00037 * 5.12220 * 6 5 4 8 8 C 1.37877 * 120.00135 * 185.11718 * 6 5 4 9 9 N 1.31513 * 119.99902 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00225 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47408 * 89.99701 * 10 8 6 12 12 H 1.48498 * 109.47107 * 210.00410 * 10 8 6 13 13 H 1.48511 * 109.46909 * 330.00052 * 10 8 6 14 14 C 1.39986 * 110.99962 * 180.54159 * 4 2 1 15 15 N 1.31230 * 125.97597 * 338.63841 * 14 4 2 16 16 N 1.40079 * 108.16905 * 179.97438 * 15 14 4 17 17 C 1.46493 * 125.96770 * 179.97438 * 16 15 14 18 18 C 1.34959 * 108.05661 * 0.26091 * 16 15 14 19 19 C 1.35251 * 107.86168 * 359.57846 * 18 16 15 20 20 N 1.48020 * 126.07101 * 180.16305 * 19 18 16 21 21 O 1.21809 * 119.99704 * 0.49786 * 20 19 18 22 22 O 1.21795 * 120.00430 * 180.49793 * 20 19 18 23 23 H 1.08994 * 109.47215 * 304.32663 * 1 2 3 24 24 H 1.09008 * 109.47037 * 64.32642 * 1 2 3 25 25 H 1.09001 * 109.46920 * 184.32245 * 1 2 3 26 26 H 1.09006 * 109.47060 * 240.00723 * 2 1 3 27 27 H 1.08996 * 109.47617 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47367 * 300.00833 * 3 2 1 29 29 H 1.09003 * 109.46586 * 59.99822 * 3 2 1 30 30 H 1.09001 * 109.46848 * 178.93338 * 5 4 2 31 31 H 1.09000 * 109.47033 * 298.92596 * 5 4 2 32 32 H 0.97007 * 120.00000 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47304 * 90.02605 * 17 16 15 34 34 H 1.09004 * 109.46879 * 210.02175 * 17 16 15 35 35 H 1.08999 * 109.47742 * 330.02747 * 17 16 15 36 36 H 1.07995 * 126.07209 * 179.73783 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4832 -2.0580 1.2747 6 6 1.8928 -2.8272 0.0453 7 1 2.5594 -2.3778 -0.6758 8 6 1.4165 -4.1049 -0.1590 9 7 0.6044 -4.6521 0.7189 10 14 1.9248 -5.0587 -1.6825 11 1 3.1591 -5.8321 -1.3936 12 1 0.8355 -5.9911 -2.0691 13 1 2.1837 -4.1111 -2.7963 14 6 3.4190 -0.7006 1.2379 15 7 4.2194 -0.5420 0.2101 16 7 5.5405 -0.6147 0.6700 17 6 6.7461 -0.4890 -0.1527 18 6 5.5085 -0.8273 2.0024 19 6 4.2117 -0.8790 2.3832 20 7 3.7160 -1.0922 3.7615 21 8 4.5061 -1.2316 4.6781 22 8 2.5182 -1.1283 3.9792 23 1 -0.3633 0.5795 0.8486 24 1 -0.3633 0.4453 -0.9263 25 1 -0.3633 -1.0248 0.0775 26 1 1.8933 -0.5137 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.8765 -2.5544 2.1618 31 1 0.3955 -2.0183 1.3328 32 1 0.2690 -5.5509 0.5750 33 1 7.0466 0.5578 -0.1993 34 1 7.5500 -1.0785 0.2883 35 1 6.5389 -0.8525 -1.1591 36 1 6.3661 -0.9342 2.6500 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231665821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = 66.318829 kcal Electronic energy + Delta-G solvation = -21719.630122 eV Core-core repulsion = 18436.835988 eV Total energy + Delta-G solvation = -3282.794134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.28658 -42.20122 -39.28510 -37.27888 -34.93617 -34.42291 -32.41471 -32.10173 -29.33777 -28.10122 -27.72443 -25.88950 -24.50631 -22.94346 -22.18288 -20.58319 -19.86571 -19.27895 -18.44888 -18.41885 -17.41747 -17.16024 -16.62477 -16.48901 -15.82523 -15.40465 -14.84134 -14.50229 -13.80973 -13.62724 -13.52392 -13.23317 -13.15361 -12.92826 -12.88780 -12.59226 -12.52269 -12.37522 -12.18498 -12.07995 -11.94064 -11.81936 -11.78882 -11.58686 -10.74015 -10.65633 -10.36723 -9.28343 -8.22526 -6.40156 -0.59226 0.48341 0.59035 1.29043 1.31598 1.33134 1.42604 1.49306 2.31712 2.78934 3.05478 3.27366 3.62624 3.88035 4.08436 4.17969 4.32217 4.40642 4.43028 4.54632 4.68104 4.80429 4.93289 4.94847 5.00912 5.13141 5.28449 5.32904 5.41281 5.47746 5.64156 5.70438 5.80635 5.96379 6.27946 6.43141 6.76314 6.87071 7.29804 8.82785 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.008191 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.383983 B = 3417.596875 C = 3482.242883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 C -0.133 4.133 4 N -0.459 5.459 5 C 0.218 3.782 6 C -0.556 4.556 7 H 0.061 0.939 8 C 0.017 3.983 9 N -0.920 5.920 10 Si 0.957 3.043 11 H -0.277 1.277 12 H -0.278 1.278 13 H -0.266 1.266 14 C 0.331 3.669 15 N -0.327 5.327 16 N -0.336 5.336 17 C 0.087 3.913 18 C 0.176 3.824 19 C -0.227 4.227 20 N 0.080 4.920 21 O -0.180 6.180 22 O -0.213 6.213 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.000 1.000 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.459 10.342 -3.440 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 C -0.191 4.191 4 N -0.181 5.181 5 C 0.094 3.906 6 C -0.595 4.595 7 H 0.079 0.921 8 C -0.183 4.183 9 N -0.559 5.559 10 Si 0.781 3.219 11 H -0.203 1.203 12 H -0.203 1.203 13 H -0.191 1.191 14 C 0.072 3.928 15 N -0.155 5.155 16 N -0.114 5.114 17 C -0.051 4.051 18 C 0.018 3.982 19 C -0.328 4.328 20 N 0.588 4.412 21 O -0.393 6.393 22 O -0.416 6.416 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 13.505 10.766 -5.001 17.980 hybrid contribution -0.208 -1.553 0.166 1.575 sum 13.297 9.213 -4.835 16.884 Atomic orbital electron populations 1.21780 0.93481 1.01766 1.02320 1.21576 0.96348 0.94391 0.90120 1.21817 1.00693 0.94158 1.02439 1.60299 0.99203 1.19567 1.39054 1.19442 0.95420 0.80642 0.95107 1.21923 1.29452 1.00514 1.07629 0.92060 1.25757 0.94720 0.98461 0.99404 1.70081 1.33127 1.15836 1.36902 0.85581 0.77994 0.78523 0.79756 1.20327 1.20292 1.19057 1.20704 0.91860 0.91937 0.88311 1.78009 0.87280 1.31096 1.19120 1.48863 1.06903 1.50121 1.05504 1.22666 0.80216 1.06365 0.95862 1.22815 0.96920 0.91585 0.86885 1.21211 0.95294 1.33235 0.83013 1.42541 1.00390 0.96308 1.01932 1.94366 1.53227 1.54049 1.37671 1.94627 0.99189 1.57613 1.90158 0.92035 0.90234 0.93903 0.94013 0.93278 0.90013 0.92627 0.98141 0.94664 0.92471 0.87075 0.84736 0.88657 0.73287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.99 71.98 0.65 -4.49 16 2 C 0.08 3.34 1.96 44.91 0.09 3.43 16 3 C -0.13 -4.33 9.02 71.98 0.65 -3.68 16 4 N -0.46 -21.27 4.05 -680.94 -2.76 -24.02 16 5 C 0.22 11.99 4.24 85.56 0.36 12.36 16 6 C -0.56 -31.19 7.77 25.60 0.20 -30.99 16 7 H 0.06 3.41 6.17 -2.91 -0.02 3.40 16 8 C 0.02 0.95 5.46 84.65 0.46 1.42 16 9 N -0.92 -55.45 13.29 21.45 0.28 -55.16 16 10 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.33 14.04 4.41 133.39 0.59 14.62 16 15 N -0.33 -12.04 10.00 -54.54 -0.55 -12.58 16 16 N -0.34 -8.46 4.01 -369.62 -1.48 -9.94 16 17 C 0.09 0.98 11.47 127.77 1.47 2.44 16 18 C 0.18 4.55 11.16 83.52 0.93 5.48 16 19 C -0.23 -8.79 7.10 36.22 0.26 -8.53 16 20 N 0.08 3.47 4.45 -46.83 -0.21 3.26 16 21 O -0.18 -7.07 19.02 18.87 0.36 -6.71 16 22 O -0.21 -10.61 16.92 18.89 0.32 -10.29 16 23 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.04 1.90 6.13 -2.39 -0.01 1.88 16 26 H 0.04 1.87 6.41 -2.38 -0.02 1.85 16 27 H 0.05 1.62 6.21 -2.39 -0.01 1.60 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.00 0.03 6.90 -2.39 -0.02 0.01 16 31 H 0.04 2.07 6.21 -2.39 -0.01 2.06 16 32 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.25 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -77.18 305.57 4.74 -72.43 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.10 Total: 4.71 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.65 Total: -7.94 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -4.71 Total: -98.45 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.68 Total: -17.00 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -77.18 4.74 -72.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231665821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.753 kcal (2) G-P(sol) polarization free energy of solvation -77.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds