Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28301 * 2 1 4 4 O 1.21309 * 110.24521 * 179.73128 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 N 1.46896 * 109.47114 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00159 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47395 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99828 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00065 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99760 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46964 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00067 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00063 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00074 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00088 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47309 * 89.99962 * 18 16 14 20 20 H 1.48500 * 109.47275 * 210.00065 * 18 16 14 21 21 H 1.48506 * 109.47066 * 330.00044 * 18 16 14 22 22 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 23 23 H 1.09001 * 109.46720 * 269.97027 * 1 2 3 24 24 H 1.08998 * 109.47458 * 29.96895 * 1 2 3 25 25 H 1.09000 * 109.47577 * 149.97125 * 1 2 3 26 26 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 27 27 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 28 28 H 1.09001 * 109.46832 * 299.99686 * 7 6 5 29 29 H 1.09004 * 109.47261 * 59.99705 * 7 6 5 30 30 H 1.00902 * 111.00063 * 303.95550 * 8 7 6 31 31 H 1.09002 * 109.47226 * 299.99824 * 9 8 7 32 32 H 1.08996 * 109.47244 * 60.00226 * 9 8 7 33 33 H 0.96996 * 120.00179 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.47106 * 299.99717 * 13 12 10 35 35 H 1.08996 * 109.46897 * 60.00282 * 13 12 10 36 36 H 0.97008 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0053 5 6 3.5298 -0.6211 -0.0009 6 6 4.7969 -1.4370 -0.0016 7 6 5.2252 -1.7126 -1.4443 8 7 6.4606 -2.5074 -1.4450 9 6 6.9025 -2.7924 -2.8167 10 6 8.1692 -3.6080 -2.7772 11 8 8.6556 -3.9214 -1.7113 12 7 8.7608 -3.9900 -3.9263 13 6 9.9924 -4.7824 -3.8878 14 6 10.4456 -5.0750 -5.2950 15 1 9.8737 -4.7071 -6.1340 16 6 11.5904 -5.8122 -5.5113 17 7 11.9862 -6.0671 -6.7393 18 14 12.5793 -6.4491 -4.0602 19 1 12.0833 -7.7950 -3.6756 20 1 14.0123 -6.5394 -4.4391 21 1 12.4284 -5.5193 -2.9121 22 7 2.3030 -1.0841 -0.0006 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5133 25 1 -0.3634 -0.8897 -0.5143 26 1 5.5844 -0.8855 0.5121 27 1 4.6209 -2.3821 0.5121 28 1 4.4377 -2.2641 -1.9580 29 1 5.4013 -0.7675 -1.9580 30 1 7.1877 -2.0460 -0.9191 31 1 6.1267 -3.3520 -3.3394 32 1 7.0898 -1.8550 -3.3403 33 1 8.3715 -3.7398 -4.7787 34 1 10.7683 -4.2227 -3.3656 35 1 9.8052 -5.7196 -3.3638 36 1 12.7915 -6.5862 -6.8915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231891294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = 27.133293 kcal Electronic energy + Delta-G solvation = -18990.342354 eV Core-core repulsion = 15705.849007 eV Total energy + Delta-G solvation = -3284.493346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -45.91942 -39.10315 -36.85613 -36.28610 -34.35399 -33.87756 -32.37861 -30.90638 -29.47636 -28.35873 -26.08536 -24.05903 -23.04567 -21.88894 -21.53836 -19.91999 -18.47866 -17.78432 -17.36937 -16.44209 -15.99037 -15.92920 -15.10169 -14.83387 -14.50320 -14.22200 -14.00064 -13.81275 -13.59175 -13.21643 -12.99865 -12.73576 -12.63902 -12.38402 -12.29664 -11.85152 -11.62895 -11.52184 -11.34795 -11.03721 -10.77489 -10.22274 -9.98788 -9.51788 -9.27615 -8.79739 -8.63243 -8.17200 -6.23097 -4.25652 0.78199 1.86226 2.41644 3.18332 3.24320 3.26467 3.32806 3.40807 3.62487 3.74128 4.28961 4.32587 4.52044 4.59974 4.67326 4.95530 4.99831 5.01937 5.12095 5.21291 5.25756 5.33517 5.43245 5.45783 5.50767 5.58046 5.67514 6.59059 6.81157 7.05157 7.15167 7.19856 7.37190 7.82418 8.11274 8.48762 8.73136 8.90329 9.36874 10.88760 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.060625 B = 0.002446 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.745911 B =11446.417317 C =11641.364900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.076 5.924 5 C 0.192 3.808 6 C -0.028 4.028 7 C 0.064 3.936 8 N -0.670 5.670 9 C 0.041 3.959 10 C 0.499 3.501 11 O -0.546 6.546 12 N -0.707 5.707 13 C 0.221 3.779 14 C -0.544 4.544 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.892 5.892 18 Si 0.878 3.122 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.261 1.261 22 N -0.480 5.480 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.354 0.646 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.396 0.604 34 H 0.025 0.975 35 H 0.021 0.979 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.413 12.511 11.927 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.097 5.097 4 O 0.018 5.982 5 C -0.029 4.029 6 C -0.067 4.067 7 C -0.066 4.066 8 N -0.303 5.303 9 C -0.091 4.091 10 C 0.283 3.717 11 O -0.424 6.424 12 N -0.356 5.356 13 C 0.099 3.901 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.529 5.529 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.185 1.185 22 N -0.214 5.214 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.141 0.859 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.174 0.826 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.855 12.089 12.636 26.458 hybrid contribution 0.862 0.541 -0.156 1.029 sum -18.993 12.630 12.480 26.000 Atomic orbital electron populations 1.20147 0.82905 1.04744 1.04328 1.25954 1.00684 0.83536 1.00431 1.74654 0.89416 1.23961 1.21711 1.85303 1.22361 1.24900 1.65641 1.28761 0.96998 0.82045 0.95145 1.20221 0.87793 0.98830 0.99872 1.21884 0.94004 0.96630 0.94130 1.60007 1.06615 1.50214 1.13433 1.21822 0.96959 0.99600 0.90737 1.20345 0.85419 0.81138 0.84792 1.90660 1.65347 1.56613 1.29768 1.46166 1.27841 1.54109 1.07465 1.19486 0.81769 0.90597 0.98244 1.21093 1.10711 1.35706 0.90723 0.90262 1.24809 0.96851 0.95098 0.95953 1.69885 1.24367 1.38947 1.19745 0.86800 0.79435 0.80207 0.83130 1.19812 1.20923 1.18511 1.71946 0.99739 1.29294 1.20400 0.89300 0.89505 0.88922 0.87697 0.85871 0.89795 0.94320 0.82627 0.88119 0.92279 0.77022 0.95732 0.96079 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.17 1.66 8.22 -156.37 -1.28 0.38 16 3 N -0.39 -4.32 12.16 30.90 0.38 -3.95 16 4 O 0.08 0.78 11.31 18.11 0.20 0.98 16 5 C 0.19 1.77 7.77 -13.05 -0.10 1.67 16 6 C -0.03 -0.20 6.10 -27.88 -0.17 -0.37 16 7 C 0.06 0.53 5.67 -3.83 -0.02 0.50 16 8 N -0.67 -7.42 6.12 -115.06 -0.70 -8.12 16 9 C 0.04 0.50 6.17 -4.97 -0.03 0.47 16 10 C 0.50 8.88 7.87 -10.99 -0.09 8.79 16 11 O -0.55 -11.80 16.20 5.56 0.09 -11.71 16 12 N -0.71 -13.67 5.55 -61.47 -0.34 -14.01 16 13 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 14 C -0.54 -14.72 9.83 -34.44 -0.34 -15.06 16 15 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 18 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.89 16 22 N -0.48 -5.12 11.55 -9.87 -0.11 -5.24 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.35 3.88 8.43 -39.29 -0.33 3.55 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 6.66 8.32 -40.82 -0.34 6.32 16 34 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -33.87 318.12 -6.19 -40.06 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.82 Total: 2.39 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.78 Total: 3.74 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.01 Total: -56.82 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.29 Total: -10.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.87 -6.19 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231891294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.190 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds