Wall clock time and date at job start Mon Mar 30 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28301 * 2 1 4 4 O 1.21309 * 110.24521 * 179.73128 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 N 1.46896 * 109.47114 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00159 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47395 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99828 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00065 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99760 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46964 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00067 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00063 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00074 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00088 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47309 * 89.99962 * 18 16 14 20 20 H 1.48500 * 109.47275 * 210.00065 * 18 16 14 21 21 H 1.48506 * 109.47066 * 330.00044 * 18 16 14 22 22 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 23 23 H 1.09001 * 109.46720 * 269.97027 * 1 2 3 24 24 H 1.08998 * 109.47458 * 29.96895 * 1 2 3 25 25 H 1.09000 * 109.47577 * 149.97125 * 1 2 3 26 26 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 27 27 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 28 28 H 1.09001 * 109.46832 * 299.99686 * 7 6 5 29 29 H 1.09004 * 109.47261 * 59.99705 * 7 6 5 30 30 H 1.00902 * 111.00063 * 303.95550 * 8 7 6 31 31 H 1.09002 * 109.47226 * 299.99824 * 9 8 7 32 32 H 1.08996 * 109.47244 * 60.00226 * 9 8 7 33 33 H 0.96996 * 120.00179 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.47106 * 299.99717 * 13 12 10 35 35 H 1.08996 * 109.46897 * 60.00282 * 13 12 10 36 36 H 0.97008 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0053 5 6 3.5298 -0.6211 -0.0009 6 6 4.7969 -1.4370 -0.0016 7 6 5.2252 -1.7126 -1.4443 8 7 6.4606 -2.5074 -1.4450 9 6 6.9025 -2.7924 -2.8167 10 6 8.1692 -3.6080 -2.7772 11 8 8.6556 -3.9214 -1.7113 12 7 8.7608 -3.9900 -3.9263 13 6 9.9924 -4.7824 -3.8878 14 6 10.4456 -5.0750 -5.2950 15 1 9.8737 -4.7071 -6.1340 16 6 11.5904 -5.8122 -5.5113 17 7 11.9862 -6.0671 -6.7393 18 14 12.5793 -6.4491 -4.0602 19 1 12.0833 -7.7950 -3.6756 20 1 14.0123 -6.5394 -4.4391 21 1 12.4284 -5.5193 -2.9121 22 7 2.3030 -1.0841 -0.0006 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5133 25 1 -0.3634 -0.8897 -0.5143 26 1 5.5844 -0.8855 0.5121 27 1 4.6209 -2.3821 0.5121 28 1 4.4377 -2.2641 -1.9580 29 1 5.4013 -0.7675 -1.9580 30 1 7.1877 -2.0460 -0.9191 31 1 6.1267 -3.3520 -3.3394 32 1 7.0898 -1.8550 -3.3403 33 1 8.3715 -3.7398 -4.7787 34 1 10.7683 -4.2227 -3.3656 35 1 9.8052 -5.7196 -3.3638 36 1 12.7915 -6.5862 -6.8915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231891294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:47 Heat of formation + Delta-G solvation = -1.454637 kcal Electronic energy + Delta-G solvation = -18991.582019 eV Core-core repulsion = 15705.849007 eV Total energy + Delta-G solvation = -3285.733012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -46.65196 -40.53415 -37.67789 -37.03446 -36.08268 -34.69390 -34.36967 -31.72804 -30.25372 -29.88612 -27.25665 -24.87993 -24.05749 -23.42976 -22.22126 -21.42665 -19.29732 -19.11444 -18.46239 -17.79917 -17.20301 -17.07609 -16.39396 -16.11646 -15.79387 -15.17997 -14.94447 -14.70990 -14.48395 -14.36909 -14.34125 -13.97050 -13.60020 -13.54466 -13.21143 -13.01994 -12.95941 -12.66303 -12.29224 -12.22347 -12.06321 -11.91652 -11.63773 -10.96047 -10.90464 -10.74024 -9.89270 -9.43948 -8.38609 -6.45534 0.06782 1.14914 1.34664 1.36909 1.49129 1.72979 1.78927 2.29414 2.37759 2.67553 2.96957 3.04759 3.36483 3.89022 3.92451 4.03324 4.08277 4.39759 4.43214 4.51627 4.53461 4.56584 4.69248 4.81695 4.83185 4.93390 4.98016 5.06342 5.09816 5.28438 5.55791 5.81003 6.11575 6.33582 6.56202 6.90407 7.11098 7.17754 7.46802 8.75995 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.060625 B = 0.002446 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.745911 B =11446.417317 C =11641.364900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.161 3.839 3 N -0.412 5.412 4 O 0.068 5.932 5 C 0.199 3.801 6 C -0.022 4.022 7 C 0.071 3.929 8 N -0.683 5.683 9 C 0.054 3.946 10 C 0.498 3.502 11 O -0.585 6.585 12 N -0.708 5.708 13 C 0.232 3.768 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.024 3.976 17 N -0.932 5.932 18 Si 0.939 3.061 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.259 1.259 22 N -0.503 5.503 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.354 0.646 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.409 0.591 34 H 0.013 0.987 35 H 0.010 0.990 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.381 13.076 12.915 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 N -0.124 5.124 4 O 0.012 5.988 5 C -0.022 4.022 6 C -0.061 4.061 7 C -0.059 4.059 8 N -0.317 5.317 9 C -0.077 4.077 10 C 0.285 3.715 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.108 3.892 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.177 4.177 17 N -0.571 5.571 18 Si 0.763 3.237 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.183 1.183 22 N -0.238 5.238 23 H 0.121 0.879 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.174 0.826 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.031 0.969 35 H 0.028 0.972 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.847 12.674 13.614 27.939 hybrid contribution 1.096 0.390 -0.483 1.260 sum -19.751 13.064 13.131 27.078 Atomic orbital electron populations 1.20347 0.80575 1.05720 1.05532 1.26645 1.02168 0.83068 0.99249 1.74646 0.89815 1.24756 1.23153 1.85271 1.22217 1.25303 1.65961 1.29105 0.97317 0.81832 0.93904 1.20267 0.87459 0.98839 0.99514 1.21830 0.92517 0.96718 0.94832 1.59971 1.07476 1.51405 1.12817 1.21748 0.94050 0.99920 0.92023 1.21313 0.86470 0.80427 0.83321 1.90639 1.66789 1.58072 1.31064 1.46025 1.26786 1.54046 1.09029 1.19066 0.83571 0.90649 0.95886 1.21320 1.10406 1.35039 0.91649 0.92240 1.25632 0.98127 0.95517 0.98377 1.69990 1.25252 1.40145 1.21708 0.85834 0.78307 0.79720 0.79874 1.19101 1.19966 1.18304 1.71972 1.00466 1.29899 1.21460 0.87879 0.88423 0.88007 0.85556 0.85839 0.90067 0.93022 0.82589 0.86210 0.89419 0.75549 0.96897 0.97205 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.16 3.03 8.22 138.46 1.14 4.17 16 3 N -0.41 -8.80 12.16 -60.32 -0.73 -9.54 16 4 O 0.07 1.32 11.31 74.86 0.85 2.17 16 5 C 0.20 3.38 7.77 88.38 0.69 4.07 16 6 C -0.02 -0.26 6.10 29.85 0.18 -0.08 16 7 C 0.07 0.97 5.67 86.30 0.49 1.46 16 8 N -0.68 -13.40 6.12 -517.94 -3.17 -16.57 16 9 C 0.05 1.16 6.17 85.56 0.53 1.69 16 10 C 0.50 16.92 7.87 87.66 0.69 17.61 16 11 O -0.59 -24.76 16.20 -3.02 -0.05 -24.81 16 12 N -0.71 -26.69 5.55 -466.79 -2.59 -29.28 16 13 C 0.23 11.12 4.50 85.63 0.38 11.50 16 14 C -0.55 -29.70 9.83 25.60 0.25 -29.45 16 15 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 16 C 0.02 1.32 5.47 84.65 0.46 1.79 16 17 N -0.93 -55.32 13.96 21.44 0.30 -55.02 16 18 Si 0.94 43.68 27.47 68.60 1.88 45.56 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 22 N -0.50 -10.13 11.55 -303.20 -3.50 -13.63 16 23 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.35 6.96 8.43 -89.69 -0.76 6.20 16 31 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 13.25 8.32 -92.71 -0.77 12.48 16 34 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 35 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 36 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -72.88 318.12 -1.92 -74.80 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -0.47 Total: 13.46 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.56 Total: 12.86 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -9.70 Total: -124.03 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.80 Total: -22.65 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -72.88 -1.92 -74.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231891294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.343 kcal (2) G-P(sol) polarization free energy of solvation -72.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds