Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47264 * 2 1 4 4 C 1.46904 * 110.99825 * 162.94610 * 3 2 1 5 5 C 1.50700 * 109.46899 * 196.52285 * 4 3 2 6 6 H 1.08001 * 120.00034 * 5.03000 * 5 4 3 7 7 C 1.37877 * 119.99668 * 185.02391 * 5 4 3 8 8 N 1.31513 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99466 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46888 * 120.00311 * 9 7 5 12 12 H 1.48496 * 109.46900 * 239.99639 * 9 7 5 13 13 C 1.39570 * 110.99941 * 286.90109 * 3 2 1 14 14 C 1.35419 * 126.63017 * 295.39961 * 13 3 2 15 15 N 1.48083 * 125.94899 * 359.92606 * 14 13 3 16 16 O 1.21799 * 120.00049 * 7.54991 * 15 14 13 17 17 O 1.21809 * 119.99890 * 187.55077 * 15 14 13 18 18 N 1.34242 * 108.10682 * 179.97438 * 14 13 3 19 19 C 1.30393 * 109.40096 * 359.97438 * 18 14 13 20 20 C 1.50698 * 125.65827 * 179.97438 * 19 18 14 21 21 N 1.36196 * 108.68331 * 359.76960 * 19 18 14 22 22 C 1.46500 * 126.46486 * 180.23051 * 21 19 18 23 23 H 1.09003 * 109.47087 * 65.09041 * 1 2 3 24 24 H 1.09006 * 109.47322 * 185.08633 * 1 2 3 25 25 H 1.08998 * 109.47228 * 305.08802 * 1 2 3 26 26 H 1.09002 * 109.47267 * 239.99376 * 2 1 3 27 27 H 1.09003 * 109.46638 * 120.00014 * 2 1 3 28 28 H 1.08996 * 109.47156 * 316.52773 * 4 3 2 29 29 H 1.09003 * 109.46855 * 76.52675 * 4 3 2 30 30 H 0.96995 * 119.99689 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47088 * 90.02731 * 20 19 18 32 32 H 1.09004 * 109.47000 * 210.02870 * 20 19 18 33 33 H 1.09000 * 109.46756 * 330.02754 * 20 19 18 34 34 H 1.09000 * 109.47329 * 270.16461 * 22 21 19 35 35 H 1.08998 * 109.46823 * 30.16312 * 22 21 19 36 36 H 1.09002 * 109.46744 * 150.16004 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4313 1.4442 0.4022 5 6 3.7862 2.8585 0.7829 6 1 3.0199 3.6190 0.8096 7 6 5.0893 3.1814 1.0973 8 7 6.0225 2.2553 1.0644 9 14 5.5290 4.9344 1.5699 10 1 4.3082 5.7788 1.5303 11 1 6.0978 4.9493 2.9415 12 1 6.5310 5.4685 0.6128 13 6 1.8293 1.9828 -1.2467 14 6 2.4138 1.6217 -2.4137 15 7 3.3786 0.5133 -2.5962 16 8 3.6072 -0.2527 -1.6773 17 8 3.9437 0.3676 -3.6654 18 7 1.9670 2.4441 -3.3761 19 6 1.1302 3.3005 -2.8599 20 6 0.4115 4.3899 -3.6134 21 7 1.0098 3.0443 -1.5277 22 6 0.1663 3.7693 -0.5744 23 1 -0.3633 0.4329 -0.9321 24 1 -0.3634 -1.0237 0.0911 25 1 -0.3633 0.5907 0.8409 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.5938 0.7864 1.2560 29 1 4.0596 1.1230 -0.4286 30 1 6.9391 2.4825 1.2860 31 1 -0.5392 4.0081 -3.9854 32 1 0.2289 5.2330 -2.9470 33 1 1.0253 4.7167 -4.4529 34 1 0.7312 4.5972 -0.1457 35 1 -0.7128 4.1573 -1.0890 36 1 -0.1472 3.0930 0.2209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233444618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = 76.039134 kcal Electronic energy + Delta-G solvation = -21969.453120 eV Core-core repulsion = 18687.080490 eV Total energy + Delta-G solvation = -3282.372630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.53270 -41.02783 -37.30716 -35.62489 -34.14239 -32.88881 -31.69641 -30.29245 -27.95981 -27.57714 -26.30191 -24.41472 -22.54989 -22.35160 -20.40734 -19.78376 -18.40861 -17.78396 -17.08662 -16.53823 -16.16940 -15.95980 -14.93472 -14.75426 -14.23676 -13.95645 -13.46693 -13.39250 -12.83405 -12.65598 -12.52606 -12.42672 -11.97082 -11.88664 -11.51896 -11.08296 -10.96105 -10.78849 -10.76502 -10.71201 -10.31993 -10.14019 -9.94568 -9.72676 -9.41220 -8.59003 -8.37845 -7.86998 -6.14404 -4.19465 0.91783 1.77176 2.01626 2.64324 3.00366 3.20837 3.27289 3.29756 4.18419 4.34378 4.42212 4.61926 4.96535 5.19498 5.22001 5.26644 5.34382 5.35157 5.49672 5.56806 5.62256 5.67570 5.84370 6.04490 6.09914 6.25920 6.42350 6.71881 7.00271 7.09066 7.25354 7.50894 7.63937 7.80434 7.89821 8.20642 8.49148 8.84800 9.44512 10.95067 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.008874 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.200267 B = 3154.410569 C = 3541.131217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 N -0.491 5.491 4 C 0.191 3.809 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.884 5.884 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.340 3.660 14 C -0.003 4.003 15 N 0.078 4.922 16 O -0.151 6.151 17 O -0.163 6.163 18 N -0.441 5.441 19 C 0.224 3.776 20 C -0.062 4.062 21 N -0.444 5.444 22 C 0.078 3.922 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 2.628 -3.641 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.216 5.216 4 C 0.069 3.931 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.522 5.522 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.121 3.879 14 C -0.214 4.214 15 N 0.593 4.407 16 O -0.361 6.361 17 O -0.377 6.377 18 N -0.163 5.163 19 C -0.041 4.041 20 C -0.120 4.120 21 N -0.128 5.128 22 C -0.064 4.064 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.971 3.344 -3.877 15.822 hybrid contribution 0.950 0.416 0.590 1.193 sum -14.021 3.760 -3.286 14.884 Atomic orbital electron populations 1.21863 0.96113 1.01454 1.01160 1.22385 0.94418 0.87612 1.03609 1.59280 1.26682 1.16753 1.18838 1.20216 0.77455 0.98378 0.97097 1.21080 0.93609 0.94228 1.47327 0.92472 1.24960 0.96200 0.97526 0.95489 1.69962 1.01688 1.32819 1.47763 0.86468 0.78424 0.84364 0.78310 1.19920 1.20629 1.20930 1.18850 0.89901 0.88931 0.90254 1.20898 1.06565 1.00796 0.93177 1.42024 0.98971 0.99708 0.99972 1.94463 1.67856 1.39498 1.34281 1.94490 1.49967 1.78396 1.14871 1.69463 1.11141 1.04622 1.31027 1.23253 1.00310 1.00159 0.80360 1.20219 0.99544 0.92716 0.99564 1.45447 1.33543 1.24419 1.09440 1.22117 0.93661 0.97971 0.92648 0.94245 0.92110 0.91985 0.92370 0.89190 0.93503 0.95157 0.92579 0.89784 0.90098 0.88595 0.89589 0.89502 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.92 37.16 0.37 -1.70 16 2 C 0.05 0.83 5.12 -3.83 -0.02 0.81 16 3 N -0.49 -10.26 4.43 -174.17 -0.77 -11.03 16 4 C 0.19 4.92 4.17 -4.97 -0.02 4.90 16 5 C -0.52 -14.42 8.86 -34.44 -0.31 -14.72 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.88 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.34 6.96 4.48 -151.71 -0.68 6.28 16 14 C 0.00 -0.07 7.44 -145.12 -1.08 -1.15 16 15 N 0.08 1.87 4.19 32.78 0.14 2.01 16 16 O -0.15 -3.64 12.49 -29.46 -0.37 -4.01 16 17 O -0.16 -3.97 19.25 -29.46 -0.57 -4.53 16 18 N -0.44 -9.01 11.23 -7.43 -0.08 -9.10 16 19 C 0.22 3.57 7.94 -154.44 -1.23 2.35 16 20 C -0.06 -0.59 10.00 36.00 0.36 -0.23 16 21 N -0.44 -7.28 3.19 -119.97 -0.38 -7.66 16 22 C 0.08 0.89 10.78 59.85 0.65 1.54 16 23 H 0.04 0.56 7.76 -51.93 -0.40 0.16 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.13 4.94 -51.93 -0.26 0.88 16 27 H 0.09 1.56 7.70 -51.93 -0.40 1.16 16 28 H 0.05 1.26 7.70 -51.93 -0.40 0.86 16 29 H 0.03 0.88 4.78 -51.93 -0.25 0.63 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.59 7.76 -51.93 -0.40 0.18 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.63 7.71 -51.93 -0.40 0.23 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -34.42 306.39 -8.35 -42.77 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.59 Total: -3.59 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.05 Total: -0.29 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.36 Total: -51.41 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.93 Total: -8.54 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.42 -8.35 -42.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233444618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.805 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds