Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47264 * 2 1 4 4 C 1.46904 * 110.99825 * 162.94610 * 3 2 1 5 5 C 1.50700 * 109.46899 * 196.52285 * 4 3 2 6 6 H 1.08001 * 120.00034 * 5.03000 * 5 4 3 7 7 C 1.37877 * 119.99668 * 185.02391 * 5 4 3 8 8 N 1.31513 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99466 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46888 * 120.00311 * 9 7 5 12 12 H 1.48496 * 109.46900 * 239.99639 * 9 7 5 13 13 C 1.39570 * 110.99941 * 286.90109 * 3 2 1 14 14 C 1.35419 * 126.63017 * 295.39961 * 13 3 2 15 15 N 1.48083 * 125.94899 * 359.92606 * 14 13 3 16 16 O 1.21799 * 120.00049 * 7.54991 * 15 14 13 17 17 O 1.21809 * 119.99890 * 187.55077 * 15 14 13 18 18 N 1.34242 * 108.10682 * 179.97438 * 14 13 3 19 19 C 1.30393 * 109.40096 * 359.97438 * 18 14 13 20 20 C 1.50698 * 125.65827 * 179.97438 * 19 18 14 21 21 N 1.36196 * 108.68331 * 359.76960 * 19 18 14 22 22 C 1.46500 * 126.46486 * 180.23051 * 21 19 18 23 23 H 1.09003 * 109.47087 * 65.09041 * 1 2 3 24 24 H 1.09006 * 109.47322 * 185.08633 * 1 2 3 25 25 H 1.08998 * 109.47228 * 305.08802 * 1 2 3 26 26 H 1.09002 * 109.47267 * 239.99376 * 2 1 3 27 27 H 1.09003 * 109.46638 * 120.00014 * 2 1 3 28 28 H 1.08996 * 109.47156 * 316.52773 * 4 3 2 29 29 H 1.09003 * 109.46855 * 76.52675 * 4 3 2 30 30 H 0.96995 * 119.99689 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47088 * 90.02731 * 20 19 18 32 32 H 1.09004 * 109.47000 * 210.02870 * 20 19 18 33 33 H 1.09000 * 109.46756 * 330.02754 * 20 19 18 34 34 H 1.09000 * 109.47329 * 270.16461 * 22 21 19 35 35 H 1.08998 * 109.46823 * 30.16312 * 22 21 19 36 36 H 1.09002 * 109.46744 * 150.16004 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4313 1.4442 0.4022 5 6 3.7862 2.8585 0.7829 6 1 3.0199 3.6190 0.8096 7 6 5.0893 3.1814 1.0973 8 7 6.0225 2.2553 1.0644 9 14 5.5290 4.9344 1.5699 10 1 4.3082 5.7788 1.5303 11 1 6.0978 4.9493 2.9415 12 1 6.5310 5.4685 0.6128 13 6 1.8293 1.9828 -1.2467 14 6 2.4138 1.6217 -2.4137 15 7 3.3786 0.5133 -2.5962 16 8 3.6072 -0.2527 -1.6773 17 8 3.9437 0.3676 -3.6654 18 7 1.9670 2.4441 -3.3761 19 6 1.1302 3.3005 -2.8599 20 6 0.4115 4.3899 -3.6134 21 7 1.0098 3.0443 -1.5277 22 6 0.1663 3.7693 -0.5744 23 1 -0.3633 0.4329 -0.9321 24 1 -0.3634 -1.0237 0.0911 25 1 -0.3633 0.5907 0.8409 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.5938 0.7864 1.2560 29 1 4.0596 1.1230 -0.4286 30 1 6.9391 2.4825 1.2860 31 1 -0.5392 4.0081 -3.9854 32 1 0.2289 5.2330 -2.9470 33 1 1.0253 4.7167 -4.4529 34 1 0.7312 4.5972 -0.1457 35 1 -0.7128 4.1573 -1.0890 36 1 -0.1472 3.0930 0.2209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233444618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = 53.691609 kcal Electronic energy + Delta-G solvation = -21970.422182 eV Core-core repulsion = 18687.080490 eV Total energy + Delta-G solvation = -3283.341691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.03219 -42.74777 -38.95100 -37.42769 -35.44302 -34.95428 -32.87924 -31.77434 -29.43794 -29.04609 -27.88940 -25.92074 -24.38690 -23.94861 -21.77107 -21.30769 -19.97830 -19.54153 -18.91265 -18.49285 -17.67994 -17.46178 -16.68537 -16.16290 -15.74204 -15.38456 -14.74247 -14.47025 -14.28098 -13.91607 -13.63481 -13.49980 -13.37895 -13.24969 -13.03008 -12.84076 -12.66789 -12.58079 -12.49068 -12.33639 -12.25770 -11.80123 -11.63419 -11.39235 -11.03011 -10.71507 -9.87453 -9.63400 -8.28408 -6.41279 -0.87968 0.16843 0.58292 1.30034 1.33358 1.34081 1.45310 1.48739 2.29718 2.80277 3.04623 3.20818 3.40554 3.83212 4.00482 4.15480 4.28772 4.38870 4.52504 4.64269 4.67608 4.72901 4.75212 4.83098 4.90912 5.01557 5.04333 5.10383 5.22973 5.35303 5.46903 5.64520 5.84521 6.05440 6.21049 6.24151 6.68719 6.74078 7.27608 8.81963 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.008874 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.200267 B = 3154.410569 C = 3541.131217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.040 3.960 3 N -0.480 5.480 4 C 0.203 3.797 5 C -0.530 4.530 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.254 1.254 11 H -0.273 1.273 12 H -0.288 1.288 13 C 0.329 3.671 14 C -0.033 4.033 15 N 0.076 4.924 16 O -0.170 6.170 17 O -0.196 6.196 18 N -0.488 5.488 19 C 0.254 3.746 20 C -0.063 4.063 21 N -0.437 5.437 22 C 0.065 3.935 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.025 0.975 29 H -0.003 1.003 30 H 0.265 0.735 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.865 5.660 -3.308 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 N -0.204 5.204 4 C 0.079 3.921 5 C -0.568 4.568 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.177 1.177 11 H -0.198 1.198 12 H -0.214 1.214 13 C 0.107 3.893 14 C -0.244 4.244 15 N 0.584 4.416 16 O -0.377 6.377 17 O -0.403 6.403 18 N -0.210 5.210 19 C -0.012 4.012 20 C -0.121 4.121 21 N -0.120 5.120 22 C -0.074 4.074 23 H 0.056 0.944 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.217 6.361 -3.563 19.622 hybrid contribution 1.818 -0.476 0.463 1.936 sum -16.399 5.884 -3.100 17.696 Atomic orbital electron populations 1.21749 0.92298 1.03360 1.01623 1.22526 0.97464 0.86042 1.02578 1.59245 1.23496 1.18332 1.19280 1.19800 0.80052 0.97259 0.95012 1.21412 0.93907 0.94962 1.46530 0.91657 1.25942 0.96218 1.02030 0.95485 1.70116 1.02086 1.35310 1.49199 0.85373 0.78571 0.79040 0.77922 1.17746 1.19808 1.21420 1.18912 0.90876 0.90258 0.89224 1.21106 1.07199 1.01175 0.94917 1.42379 0.99324 1.00327 0.99578 1.94438 1.68497 1.40532 1.34226 1.94442 1.51299 1.79270 1.15300 1.69468 1.13734 1.06218 1.31546 1.24646 0.97472 0.98874 0.80228 1.20662 1.00137 0.91592 0.99697 1.45827 1.32803 1.22929 1.10477 1.22614 0.94659 0.97415 0.92666 0.94379 0.89703 0.90536 0.94382 0.89342 0.95731 0.98532 0.92615 0.86395 0.86541 0.88229 0.89485 0.84022 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.92 71.98 0.71 -2.73 16 2 C 0.04 1.46 5.12 86.30 0.44 1.90 16 3 N -0.48 -20.16 4.43 -704.94 -3.12 -23.28 16 4 C 0.20 10.85 4.17 85.56 0.36 11.20 16 5 C -0.53 -29.35 8.86 25.60 0.23 -29.12 16 6 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 7 C 0.00 0.13 5.46 84.65 0.46 0.60 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 10 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.33 13.35 4.48 130.57 0.58 13.93 16 14 C -0.03 -1.54 7.44 128.27 0.95 -0.58 16 15 N 0.08 3.87 4.19 -50.19 -0.21 3.66 16 16 O -0.17 -8.76 12.49 18.89 0.24 -8.53 16 17 O -0.20 -10.16 19.25 18.88 0.36 -9.80 16 18 N -0.49 -19.70 11.23 -177.43 -1.99 -21.69 16 19 C 0.25 7.32 7.94 137.79 1.09 8.41 16 20 C -0.06 -0.87 10.00 71.24 0.71 -0.16 16 21 N -0.44 -13.05 3.19 -533.48 -1.70 -14.75 16 22 C 0.07 1.20 10.78 127.77 1.38 2.58 16 23 H 0.04 0.99 7.76 -2.39 -0.02 0.98 16 24 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.55 4.94 -2.39 -0.01 1.54 16 27 H 0.09 3.17 7.70 -2.39 -0.02 3.15 16 28 H 0.02 1.40 7.70 -2.39 -0.02 1.38 16 29 H 0.00 -0.18 4.78 -2.39 -0.01 -0.19 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.12 0.87 7.76 -2.38 -0.02 0.85 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.14 1.06 7.71 -2.39 -0.02 1.04 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -80.62 306.39 3.91 -76.71 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.10 Total: 2.59 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 6.92 Total: 6.03 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -6.74 Total: -112.82 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.60 Total: -18.33 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.62 3.91 -76.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233444618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.402 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds