Wall clock time and date at job start Mon Mar 30 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00282 * 2 1 4 4 H 1.08997 * 109.47468 * 326.74932 * 3 2 1 5 5 C 1.50699 * 109.47238 * 86.74723 * 3 2 1 6 6 N 1.29946 * 126.29041 * 44.97438 * 5 3 2 7 7 O 1.21300 * 110.25555 * 179.72972 * 6 5 3 8 8 C 1.33643 * 109.80924 * 0.46579 * 7 6 5 9 9 C 1.50698 * 126.55348 * 179.79933 * 8 7 6 10 10 C 1.52996 * 109.47480 * 269.69572 * 9 8 7 11 11 H 1.09010 * 109.46672 * 304.99816 * 10 9 8 12 12 O 1.42896 * 109.47461 * 64.99559 * 10 9 8 13 13 C 1.50696 * 109.47242 * 184.99777 * 10 9 8 14 14 H 1.08003 * 120.00006 * 359.97438 * 13 10 9 15 15 C 1.37885 * 120.00025 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99660 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 119.99874 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47640 * 270.00493 * 17 15 13 19 19 H 1.48507 * 109.47287 * 30.00760 * 17 15 13 20 20 H 1.48508 * 109.47101 * 150.00240 * 17 15 13 21 21 N 1.31136 * 106.89650 * 359.54311 * 8 7 6 22 22 C 1.52997 * 109.47242 * 206.74730 * 3 2 1 23 23 C 1.53005 * 117.50022 * 131.72956 * 22 3 2 24 24 C 1.52997 * 117.49972 * 63.07060 * 22 3 2 25 25 H 1.09002 * 109.46493 * 64.79252 * 1 2 3 26 26 H 1.08996 * 109.47284 * 184.79206 * 1 2 3 27 27 H 1.09001 * 109.46963 * 304.79933 * 1 2 3 28 28 H 1.08994 * 109.47127 * 149.68866 * 9 8 7 29 29 H 1.09003 * 109.46904 * 29.69203 * 9 8 7 30 30 H 0.96705 * 114.00081 * 59.99882 * 12 10 9 31 31 H 0.96999 * 120.00237 * 359.97438 * 16 15 13 32 32 H 1.09002 * 115.54952 * 277.39800 * 22 3 2 33 33 H 1.08993 * 117.49789 * 359.97438 * 23 22 3 34 34 H 1.09002 * 117.49875 * 145.01899 * 23 22 3 35 35 H 1.09006 * 117.49492 * 214.98225 * 24 22 3 36 36 H 1.09001 * 117.49812 * 359.97200 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3731 1.9869 -0.5634 5 6 2.1410 1.7971 1.4185 6 7 2.5859 1.1149 2.4311 7 8 2.5710 1.7955 3.4351 8 6 2.0914 3.0103 3.1517 9 6 1.9061 4.1503 4.1196 10 6 0.5042 4.0798 4.7284 11 1 -0.2380 4.0623 3.9301 12 8 0.3856 2.8928 5.5151 13 6 0.2745 5.2863 5.6016 14 1 1.0509 6.0289 5.7118 15 6 -0.9270 5.4421 6.2600 16 7 -1.8722 4.5375 6.1262 17 14 -1.2114 6.9372 7.3430 18 1 -0.7748 6.6344 8.7296 19 1 -0.4295 8.0852 6.8174 20 1 -2.6562 7.2809 7.3428 21 7 1.8181 3.0225 1.8692 22 6 3.3945 1.2473 -0.6492 23 6 3.7180 2.2933 -1.7179 24 6 3.4676 0.8382 -2.1216 25 1 -0.3632 0.4377 -0.9299 26 1 -0.3633 -1.0240 0.0858 27 1 -0.3633 0.5865 0.8439 28 1 2.0265 5.0971 3.5932 29 1 2.6505 4.0783 4.9126 30 1 1.0169 2.8405 6.2458 31 1 -1.7243 3.7610 5.5641 32 1 4.2066 0.9265 0.0032 33 1 2.9446 3.0226 -1.9588 34 1 4.7431 2.6604 -1.7688 35 1 4.3281 0.2485 -2.4380 36 1 2.5296 0.6100 -2.6277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234769325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:45 Heat of formation + Delta-G solvation = -12.194084 kcal Electronic energy + Delta-G solvation = -20483.694668 eV Core-core repulsion = 17165.203208 eV Total energy + Delta-G solvation = -3318.491460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.19288 -39.03002 -36.69115 -36.52502 -35.29766 -32.84975 -32.24433 -29.62273 -28.59215 -26.21643 -25.36254 -23.35669 -22.61160 -22.30450 -21.34894 -20.31722 -17.83993 -17.58228 -17.30849 -16.59026 -16.04749 -15.58738 -15.20933 -14.91855 -14.25951 -13.99363 -13.80953 -13.65765 -13.06389 -12.84943 -12.24762 -12.02081 -11.87773 -11.79926 -11.54827 -11.24868 -11.14952 -10.82675 -10.70692 -10.66040 -10.47876 -10.32710 -10.18025 -10.07093 -9.91070 -9.28314 -8.58525 -8.24305 -6.47384 -4.33569 1.54593 2.47535 3.17451 3.27415 3.37635 3.40226 3.55900 3.57808 4.02667 4.40061 4.46203 4.54938 4.65369 4.80611 4.89318 5.14569 5.22354 5.26953 5.38879 5.41962 5.45069 5.59367 5.64885 5.72375 5.76452 5.87720 5.92529 5.92886 6.07427 6.31839 6.39340 6.89281 7.22065 7.77013 8.20762 8.53674 8.72019 8.92755 9.52977 10.92740 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.004095 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.574648 B = 6835.780158 C = 7035.461589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.218 3.782 4 H 0.091 0.909 5 C 0.135 3.865 6 N -0.371 5.371 7 O 0.078 5.922 8 C 0.214 3.786 9 C -0.053 4.053 10 C 0.220 3.780 11 H 0.057 0.943 12 O -0.581 6.581 13 C -0.653 4.653 14 H 0.056 0.944 15 C 0.037 3.963 16 N -0.887 5.887 17 Si 1.072 2.928 18 H -0.286 1.286 19 H -0.287 1.287 20 H -0.283 1.283 21 N -0.492 5.492 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.160 4.160 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.359 0.641 31 H 0.285 0.715 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.991 -4.573 -12.658 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.158 3.842 4 H 0.108 0.892 5 C -0.138 4.138 6 N -0.080 5.080 7 O 0.019 5.981 8 C -0.005 4.005 9 C -0.093 4.093 10 C 0.161 3.839 11 H 0.075 0.925 12 O -0.386 6.386 13 C -0.690 4.690 14 H 0.075 0.925 15 C -0.173 4.173 16 N -0.521 5.521 17 Si 0.900 3.100 18 H -0.213 1.213 19 H -0.213 1.213 20 H -0.209 1.209 21 N -0.227 5.227 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.197 4.197 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.204 0.796 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.622 -4.836 -12.606 15.505 hybrid contribution 1.363 -0.259 -0.366 1.435 sum 8.984 -5.095 -12.972 16.582 Atomic orbital electron populations 1.22897 0.80399 1.03262 1.00440 1.88000 1.20147 1.25675 1.94335 1.19576 0.94284 0.85184 0.85189 0.89165 1.26190 1.00582 0.87935 0.99125 1.74561 1.20806 1.18487 0.94124 1.85301 1.60476 1.21544 1.30808 1.29300 0.90644 0.88613 0.91987 1.21385 1.03784 0.89844 0.94290 1.19612 0.87955 0.85210 0.91085 0.92509 1.86525 1.61941 1.44306 1.45809 1.22342 1.04202 1.08293 1.34170 0.92528 1.25843 0.92072 1.02104 0.97272 1.70613 1.34754 1.11015 1.35736 0.83520 0.76235 0.74499 0.75784 1.21267 1.21335 1.20900 1.71872 1.23022 1.19812 1.07987 1.22084 0.96200 1.06353 0.92378 1.23073 1.03241 0.92498 1.01653 1.22885 1.03595 0.97432 0.95766 0.93524 0.89030 0.93746 0.87263 0.88766 0.79568 0.90361 0.87091 0.88213 0.88148 0.88312 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.79 101.05 1.09 1.42 16 2 O -0.36 -5.41 10.30 -35.23 -0.36 -5.77 16 3 C 0.22 3.18 2.83 -27.89 -0.08 3.10 16 4 H 0.09 1.21 7.65 -51.93 -0.40 0.81 16 5 C 0.14 2.45 6.89 -156.37 -1.08 1.37 16 6 N -0.37 -7.19 12.16 30.90 0.38 -6.82 16 7 O 0.08 1.51 11.31 18.10 0.20 1.72 16 8 C 0.21 4.13 7.54 -13.06 -0.10 4.03 16 9 C -0.05 -1.01 5.46 -27.89 -0.15 -1.16 16 10 C 0.22 5.21 2.42 -27.89 -0.07 5.15 16 11 H 0.06 1.51 8.01 -51.92 -0.42 1.10 16 12 O -0.58 -13.96 11.77 -35.23 -0.41 -14.38 16 13 C -0.65 -16.93 8.76 -34.44 -0.30 -17.23 16 14 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 15 C 0.04 1.00 5.40 -17.82 -0.10 0.90 16 16 N -0.89 -26.28 13.53 55.43 0.75 -25.53 16 17 Si 1.07 23.86 29.90 -169.99 -5.08 18.77 16 18 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 N -0.49 -9.53 11.55 -9.86 -0.11 -9.65 16 22 C -0.15 -1.86 5.34 -90.62 -0.48 -2.34 16 23 C -0.17 -1.63 10.18 -26.69 -0.27 -1.90 16 24 C -0.16 -1.51 10.20 -26.70 -0.27 -1.78 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.64 8.01 -51.93 -0.42 0.22 16 28 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 29 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.36 7.48 9.04 45.56 0.41 7.89 16 31 H 0.28 8.63 6.47 -40.82 -0.26 8.36 16 32 H 0.11 1.47 8.13 -51.93 -0.42 1.05 16 33 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -31.43 317.77 -5.75 -37.18 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.08 Total: 8.14 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.81 Total: -8.45 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.01 Total: -41.99 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.57 Total: -18.43 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.43 -5.75 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234769325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.985 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds