Wall clock time and date at job start Mon Mar 30 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00282 * 2 1 4 4 H 1.08997 * 109.47468 * 326.74932 * 3 2 1 5 5 C 1.50699 * 109.47238 * 86.74723 * 3 2 1 6 6 N 1.29946 * 126.29041 * 44.97438 * 5 3 2 7 7 O 1.21300 * 110.25555 * 179.72972 * 6 5 3 8 8 C 1.33643 * 109.80924 * 0.46579 * 7 6 5 9 9 C 1.50698 * 126.55348 * 179.79933 * 8 7 6 10 10 C 1.52996 * 109.47480 * 269.69572 * 9 8 7 11 11 H 1.09010 * 109.46672 * 304.99816 * 10 9 8 12 12 O 1.42896 * 109.47461 * 64.99559 * 10 9 8 13 13 C 1.50696 * 109.47242 * 184.99777 * 10 9 8 14 14 H 1.08003 * 120.00006 * 359.97438 * 13 10 9 15 15 C 1.37885 * 120.00025 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99660 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 119.99874 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47640 * 270.00493 * 17 15 13 19 19 H 1.48507 * 109.47287 * 30.00760 * 17 15 13 20 20 H 1.48508 * 109.47101 * 150.00240 * 17 15 13 21 21 N 1.31136 * 106.89650 * 359.54311 * 8 7 6 22 22 C 1.52997 * 109.47242 * 206.74730 * 3 2 1 23 23 C 1.53005 * 117.50022 * 131.72956 * 22 3 2 24 24 C 1.52997 * 117.49972 * 63.07060 * 22 3 2 25 25 H 1.09002 * 109.46493 * 64.79252 * 1 2 3 26 26 H 1.08996 * 109.47284 * 184.79206 * 1 2 3 27 27 H 1.09001 * 109.46963 * 304.79933 * 1 2 3 28 28 H 1.08994 * 109.47127 * 149.68866 * 9 8 7 29 29 H 1.09003 * 109.46904 * 29.69203 * 9 8 7 30 30 H 0.96705 * 114.00081 * 59.99882 * 12 10 9 31 31 H 0.96999 * 120.00237 * 359.97438 * 16 15 13 32 32 H 1.09002 * 115.54952 * 277.39800 * 22 3 2 33 33 H 1.08993 * 117.49789 * 359.97438 * 23 22 3 34 34 H 1.09002 * 117.49875 * 145.01899 * 23 22 3 35 35 H 1.09006 * 117.49492 * 214.98225 * 24 22 3 36 36 H 1.09001 * 117.49812 * 359.97200 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3731 1.9869 -0.5634 5 6 2.1410 1.7971 1.4185 6 7 2.5859 1.1149 2.4311 7 8 2.5710 1.7955 3.4351 8 6 2.0914 3.0103 3.1517 9 6 1.9061 4.1503 4.1196 10 6 0.5042 4.0798 4.7284 11 1 -0.2380 4.0623 3.9301 12 8 0.3856 2.8928 5.5151 13 6 0.2745 5.2863 5.6016 14 1 1.0509 6.0289 5.7118 15 6 -0.9270 5.4421 6.2600 16 7 -1.8722 4.5375 6.1262 17 14 -1.2114 6.9372 7.3430 18 1 -0.7748 6.6344 8.7296 19 1 -0.4295 8.0852 6.8174 20 1 -2.6562 7.2809 7.3428 21 7 1.8181 3.0225 1.8692 22 6 3.3945 1.2473 -0.6492 23 6 3.7180 2.2933 -1.7179 24 6 3.4676 0.8382 -2.1216 25 1 -0.3632 0.4377 -0.9299 26 1 -0.3633 -1.0240 0.0858 27 1 -0.3633 0.5865 0.8439 28 1 2.0265 5.0971 3.5932 29 1 2.6505 4.0783 4.9126 30 1 1.0169 2.8405 6.2458 31 1 -1.7243 3.7610 5.5641 32 1 4.2066 0.9265 0.0032 33 1 2.9446 3.0226 -1.9588 34 1 4.7431 2.6604 -1.7688 35 1 4.3281 0.2485 -2.4380 36 1 2.5296 0.6100 -2.6277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234769325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:45 Heat of formation + Delta-G solvation = -36.347524 kcal Electronic energy + Delta-G solvation = -20484.742040 eV Core-core repulsion = 17165.203208 eV Total energy + Delta-G solvation = -3319.538832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.68626 -40.07420 -38.55765 -37.43766 -36.78427 -34.46009 -34.25207 -31.25772 -29.76863 -27.36018 -27.21148 -24.89812 -23.94967 -23.30531 -22.79542 -21.52689 -19.59628 -19.14248 -18.83417 -17.76147 -17.22606 -17.06441 -16.64427 -16.04996 -15.83560 -15.66751 -15.46879 -14.74259 -14.62771 -14.20631 -13.93655 -13.59180 -13.17966 -12.86429 -12.71293 -12.57902 -12.48859 -12.38162 -12.24457 -12.14257 -11.88573 -11.70818 -11.50176 -11.31759 -11.13038 -10.94883 -10.64499 -10.17693 -8.62340 -6.48834 0.03659 1.02444 1.59178 1.66965 1.77180 1.83871 2.14473 2.42002 2.59793 2.99072 3.10448 3.17793 3.55633 3.67339 3.86879 3.89192 4.02055 4.11783 4.18861 4.20361 4.28090 4.29770 4.42878 4.58248 4.63999 4.72448 4.80876 4.83869 4.92024 5.05651 5.18601 5.30248 5.76116 5.81731 6.13220 6.52545 7.04534 7.12462 7.48285 8.75663 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.004095 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.574648 B = 6835.780158 C = 7035.461589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.377 6.377 3 C 0.216 3.784 4 H 0.101 0.899 5 C 0.140 3.860 6 N -0.389 5.389 7 O 0.070 5.930 8 C 0.209 3.791 9 C -0.039 4.039 10 C 0.221 3.779 11 H 0.018 0.982 12 O -0.595 6.595 13 C -0.653 4.653 14 H 0.070 0.930 15 C -0.017 4.017 16 N -0.923 5.923 17 Si 1.120 2.880 18 H -0.273 1.273 19 H -0.264 1.264 20 H -0.291 1.291 21 N -0.504 5.504 22 C -0.178 4.178 23 C -0.157 4.157 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.016 0.984 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.372 0.628 31 H 0.266 0.734 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -3.751 -13.555 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C 0.156 3.844 4 H 0.119 0.881 5 C -0.134 4.134 6 N -0.100 5.100 7 O 0.014 5.986 8 C -0.010 4.010 9 C -0.078 4.078 10 C 0.162 3.838 11 H 0.036 0.964 12 O -0.402 6.402 13 C -0.690 4.690 14 H 0.089 0.911 15 C -0.219 4.219 16 N -0.558 5.558 17 Si 0.942 3.058 18 H -0.198 1.198 19 H -0.188 1.188 20 H -0.217 1.217 21 N -0.240 5.240 22 C -0.197 4.197 23 C -0.194 4.194 24 C -0.178 4.178 25 H 0.091 0.909 26 H 0.128 0.872 27 H 0.035 0.965 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.220 0.780 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.900 -4.015 -13.495 16.657 hybrid contribution 0.989 -0.575 -0.149 1.154 sum 9.889 -4.590 -13.644 17.465 Atomic orbital electron populations 1.23056 0.79437 1.04238 1.00604 1.87990 1.21286 1.25966 1.94191 1.19864 0.95944 0.85246 0.83351 0.88092 1.26913 0.98913 0.87263 1.00337 1.74544 1.22010 1.18899 0.94508 1.85277 1.60765 1.21543 1.31050 1.29343 0.90787 0.88709 0.92202 1.21165 1.01333 0.90307 0.94992 1.19386 0.89808 0.84513 0.90062 0.96388 1.86474 1.62910 1.44232 1.46607 1.22751 1.04160 1.08912 1.33222 0.91141 1.27342 0.92222 1.03903 0.98415 1.70762 1.36060 1.11641 1.37377 0.82905 0.76021 0.72004 0.74895 1.19809 1.18830 1.21689 1.71882 1.23170 1.20693 1.08220 1.22018 0.94384 1.09713 0.93634 1.23195 1.04147 0.92702 0.99367 1.23008 1.04602 0.97315 0.92867 0.90862 0.87240 0.96509 0.86026 0.85970 0.78042 0.92394 0.88594 0.87734 0.86854 0.86757 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.79 113.37 1.22 1.77 16 2 O -0.38 -10.92 10.30 -148.98 -1.53 -12.46 16 3 C 0.22 6.15 2.83 29.85 0.08 6.24 16 4 H 0.10 2.60 7.65 -2.39 -0.02 2.58 16 5 C 0.14 5.05 6.89 138.46 0.95 6.01 16 6 N -0.39 -15.19 12.16 -60.30 -0.73 -15.93 16 7 O 0.07 2.74 11.31 74.84 0.85 3.58 16 8 C 0.21 8.03 7.54 88.38 0.67 8.70 16 9 C -0.04 -1.43 5.46 29.85 0.16 -1.27 16 10 C 0.22 10.55 2.42 29.85 0.07 10.62 16 11 H 0.02 1.01 8.01 -2.38 -0.02 0.99 16 12 O -0.60 -29.02 11.77 -148.98 -1.75 -30.78 16 13 C -0.65 -33.41 8.76 25.60 0.22 -33.19 16 14 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 15 C -0.02 -0.91 5.40 84.66 0.46 -0.45 16 16 N -0.92 -55.72 13.53 21.45 0.29 -55.43 16 17 Si 1.12 47.10 29.90 68.60 2.05 49.15 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 N -0.50 -19.52 11.55 -303.17 -3.50 -23.02 16 22 C -0.18 -4.17 5.34 -10.79 -0.06 -4.23 16 23 C -0.16 -2.70 10.18 30.62 0.31 -2.39 16 24 C -0.14 -2.30 10.20 30.62 0.31 -1.99 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.02 0.48 8.01 -2.39 -0.02 0.46 16 28 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 29 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.37 15.49 9.04 -74.05 -0.67 14.82 16 31 H 0.27 16.70 6.47 -92.71 -0.60 16.10 16 32 H 0.10 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.34 317.77 0.67 -67.66 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.60 Total: 27.40 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.41 Total: -10.19 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -3.95 Total: -94.37 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -2.44 Total: -39.65 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.05 Total: 49.15 kcal Total: -68.34 0.67 -67.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234769325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds