Wall clock time and date at job start Mon Mar 30 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.87591 * 2 1 4 4 N 1.29951 * 126.28850 * 244.55680 * 3 2 1 5 5 O 1.21300 * 110.25010 * 179.97438 * 4 3 2 6 6 C 1.33641 * 109.81196 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.55380 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47288 * 269.95716 * 7 6 5 9 9 H 1.09006 * 109.47005 * 54.99427 * 8 7 6 10 10 O 1.42906 * 109.47049 * 294.99737 * 8 7 6 11 11 C 1.50695 * 109.47607 * 174.99646 * 8 7 6 12 12 H 1.08007 * 119.99880 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00421 * 179.97438 * 11 8 7 14 14 N 1.31506 * 119.99889 * 180.02562 * 13 11 8 15 15 Si 1.86801 * 119.99599 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47092 * 90.00269 * 15 13 11 17 17 H 1.48506 * 109.46640 * 209.99882 * 15 13 11 18 18 H 1.48494 * 109.47364 * 329.99921 * 15 13 11 19 19 N 1.31134 * 106.89855 * 359.97438 * 6 5 4 20 20 C 1.54103 * 110.00442 * 238.91349 * 2 1 3 21 21 C 1.54806 * 104.18876 * 242.53863 * 20 2 1 22 22 C 1.54995 * 102.09331 * 20.87942 * 21 20 2 23 23 O 1.43748 * 109.88183 * 121.00829 * 2 1 3 24 24 H 1.08996 * 109.47100 * 60.69540 * 1 2 3 25 25 H 1.08991 * 109.47294 * 180.70275 * 1 2 3 26 26 H 1.09003 * 109.46848 * 300.70503 * 1 2 3 27 27 H 1.09007 * 109.46827 * 29.95332 * 7 6 5 28 28 H 1.08994 * 109.47659 * 149.95422 * 7 6 5 29 29 H 0.96696 * 113.99674 * 299.99828 * 10 8 7 30 30 H 0.97009 * 119.99839 * 179.97438 * 14 13 11 31 31 H 1.09000 * 110.48441 * 1.21274 * 20 2 1 32 32 H 1.08997 * 110.48926 * 123.85925 * 20 2 1 33 33 H 1.09003 * 110.90650 * 262.67726 * 21 20 2 34 34 H 1.09000 * 110.94100 * 139.08798 * 21 20 2 35 35 H 1.09001 * 110.61413 * 204.47988 * 22 21 20 36 36 H 1.08993 * 110.75335 * 81.54221 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 7 2.7270 1.9876 -0.9459 5 8 2.9875 3.1330 -0.6435 6 6 2.4788 3.4105 0.5608 7 6 2.5790 4.7215 1.2971 8 6 3.8379 4.7231 2.1666 9 1 4.7078 4.5050 1.5469 10 8 3.7157 3.7267 3.1837 11 6 4.0044 6.0770 2.8072 12 1 3.2839 6.8581 2.6138 13 6 5.0757 6.3183 3.6409 14 7 5.2205 7.4996 4.2003 15 14 6.3213 4.9670 3.9759 16 1 7.4092 5.0356 2.9675 17 1 6.8935 5.1471 5.3344 18 1 5.6514 3.6444 3.8922 19 7 1.8747 2.3242 0.9789 20 6 2.0571 -0.7477 -1.2401 21 6 2.8373 -1.9500 -0.6551 22 6 2.2313 -2.0696 0.7665 23 8 2.0188 -0.6964 1.1586 24 1 -0.3633 0.5030 -0.8961 25 1 -0.3633 -1.0275 0.0126 26 1 -0.3633 0.5248 0.8836 27 1 2.6331 5.5389 0.5780 28 1 1.7007 4.8513 1.9293 29 1 2.9611 3.8578 3.7739 30 1 5.9741 7.6692 4.7872 31 1 1.2284 -1.0946 -1.8573 32 1 2.7222 -0.1062 -1.8182 33 1 3.9047 -1.7344 -0.6061 34 1 2.6512 -2.8543 -1.2345 35 1 2.9330 -2.5576 1.4430 36 1 1.2862 -2.6117 0.7391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235730362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:11 Heat of formation + Delta-G solvation = -25.651700 kcal Electronic energy + Delta-G solvation = -20884.193833 eV Core-core repulsion = 17565.118807 eV Total energy + Delta-G solvation = -3319.075026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.22714 -39.95282 -36.68379 -35.41497 -33.35660 -32.32025 -32.20448 -31.26230 -29.58187 -26.74414 -26.06823 -24.14776 -22.80751 -21.84063 -21.08973 -19.92095 -17.90065 -17.71779 -17.15396 -16.24094 -16.03726 -15.01028 -14.90522 -14.65253 -14.42520 -14.11241 -13.90263 -13.42755 -12.89404 -12.84818 -12.53485 -12.28224 -11.96675 -11.75083 -11.53979 -11.39253 -11.29179 -11.20124 -11.01628 -10.94153 -10.60278 -10.46563 -10.30321 -9.97305 -9.56677 -9.13818 -8.69245 -8.37407 -6.19862 -4.33406 1.48167 2.51712 3.21205 3.37224 3.44336 3.47363 3.74450 3.77787 4.26858 4.46753 4.49444 4.60212 4.68077 4.90690 4.98674 5.14176 5.27224 5.30431 5.38030 5.49603 5.53522 5.55610 5.69638 5.74284 5.82357 5.85504 5.93633 5.98796 6.09737 6.32438 6.42880 6.71372 7.12795 7.42826 8.19392 8.49700 8.73334 8.95760 9.43444 10.89960 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.004943 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.948168 B = 5662.769986 C = 6044.202597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.200 3.800 3 C 0.171 3.829 4 N -0.390 5.390 5 O 0.069 5.931 6 C 0.210 3.790 7 C -0.051 4.051 8 C 0.201 3.799 9 H 0.060 0.940 10 O -0.574 6.574 11 C -0.568 4.568 12 H 0.078 0.922 13 C 0.089 3.911 14 N -0.887 5.887 15 Si 0.867 3.133 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.217 1.217 19 N -0.466 5.466 20 C -0.148 4.148 21 C -0.154 4.154 22 C 0.043 3.957 23 O -0.349 6.349 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.361 0.639 30 H 0.267 0.733 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 -16.606 -10.010 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.158 3.842 3 C -0.102 4.102 4 N -0.101 5.101 5 O 0.012 5.988 6 C -0.010 4.010 7 C -0.090 4.090 8 C 0.142 3.858 9 H 0.077 0.923 10 O -0.380 6.380 11 C -0.605 4.605 12 H 0.096 0.904 13 C -0.116 4.116 14 N -0.524 5.524 15 Si 0.693 3.307 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.139 1.139 19 N -0.199 5.199 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.033 4.033 23 O -0.267 6.267 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.208 0.792 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.676 -17.316 -10.423 21.619 hybrid contribution 0.335 -0.075 0.334 0.479 sum -7.342 -17.390 -10.089 21.403 Atomic orbital electron populations 1.22182 0.92571 1.02979 1.03640 1.19972 0.93838 0.83521 0.86854 1.25318 0.98264 0.98847 0.87816 1.74467 1.18131 0.93159 1.24320 1.85257 1.57883 1.22551 1.33145 1.29392 0.89395 0.98920 0.83246 1.21300 1.04333 0.85164 0.98233 1.19776 0.90620 0.89149 0.86222 0.92270 1.86727 1.52012 1.53508 1.45784 1.21360 1.12269 0.96424 1.30422 0.90356 1.24923 0.97362 0.95388 0.93959 1.69933 1.30349 1.21993 1.30100 0.87080 0.80499 0.86098 0.77051 1.21273 1.22013 1.13920 1.71893 1.22700 0.99183 1.26114 1.23068 1.01255 0.97327 0.96998 1.23140 1.01076 0.98364 0.96578 1.23630 1.00042 0.84108 0.95565 1.89081 1.85856 1.20479 1.31274 0.91398 0.91111 0.90504 0.87759 0.87474 0.79214 0.92364 0.89635 0.88872 0.90294 0.89795 0.88544 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.60 37.15 0.32 -1.46 16 2 C 0.20 2.80 1.15 -91.20 -0.10 2.70 16 3 C 0.17 3.00 6.83 -156.37 -1.07 1.93 16 4 N -0.39 -6.93 10.71 30.90 0.33 -6.60 16 5 O 0.07 1.26 11.31 18.11 0.20 1.47 16 6 C 0.21 3.88 7.54 -13.06 -0.10 3.78 16 7 C -0.05 -0.92 5.46 -27.88 -0.15 -1.07 16 8 C 0.20 4.49 2.30 -27.89 -0.06 4.42 16 9 H 0.06 1.38 7.57 -51.93 -0.39 0.99 16 10 O -0.57 -13.06 9.90 -35.23 -0.35 -13.41 16 11 C -0.57 -14.86 9.34 -34.44 -0.32 -15.18 16 12 H 0.08 2.16 7.99 -52.48 -0.42 1.74 16 13 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 14 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 15 Si 0.87 21.57 26.99 -169.99 -4.59 16.98 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.22 -5.39 5.31 56.52 0.30 -5.09 16 19 N -0.47 -8.91 11.55 -9.87 -0.11 -9.02 16 20 C -0.15 -1.65 6.25 -25.20 -0.16 -1.81 16 21 C -0.15 -1.45 7.15 -24.73 -0.18 -1.63 16 22 C 0.04 0.44 7.67 38.21 0.29 0.74 16 23 O -0.35 -5.35 10.84 -35.23 -0.38 -5.73 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.36 7.28 9.04 45.56 0.41 7.69 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 0.74 7.70 -51.93 -0.40 0.34 16 32 H 0.09 1.18 6.66 -51.93 -0.35 0.84 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -32.33 303.07 -5.37 -37.70 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.19 Total: 4.71 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.63 Total: -5.18 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.99 Total: -41.10 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.53 Total: -17.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.98 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.33 -5.37 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235730362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.048 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds