Wall clock time and date at job start Mon Mar 30 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00307 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00155 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00190 * 3 2 1 7 7 C 1.39582 * 119.99365 * 180.27807 * 2 1 3 8 8 H 1.07992 * 120.00720 * 359.72526 * 7 2 1 9 9 N 1.36124 * 119.99404 * 179.71906 * 7 2 1 10 10 C 1.34777 * 119.99618 * 179.97438 * 9 7 2 11 11 O 1.21493 * 120.00329 * 0.02562 * 10 9 7 12 12 C 1.48832 * 119.99764 * 180.02562 * 10 9 7 13 13 O 1.21443 * 120.00346 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00135 * 179.97438 * 12 10 9 15 15 C 1.46505 * 120.00095 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.45489 * 325.70091 * 15 14 12 17 17 C 1.54503 * 110.51188 * 88.31027 * 15 14 12 18 18 C 1.54796 * 103.91408 * 118.61045 * 17 15 14 19 19 O 1.44418 * 104.85567 * 336.11888 * 18 17 15 20 20 C 1.44416 * 105.27891 * 40.46263 * 19 18 17 21 21 H 1.09006 * 110.37767 * 78.31687 * 20 19 18 22 22 C 1.53001 * 110.47262 * 200.60995 * 20 19 18 23 23 C 1.53002 * 117.49195 * 4.18024 * 22 20 19 24 24 C 1.53001 * 117.49481 * 295.52547 * 22 20 19 25 25 H 0.96999 * 119.99900 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00489 * 0.02562 * 9 7 2 27 27 H 0.97000 * 120.00112 * 0.02562 * 14 12 10 28 28 H 1.09001 * 110.51208 * 237.29032 * 17 15 14 29 29 H 1.09003 * 110.51084 * 359.97438 * 17 15 14 30 30 H 1.09001 * 110.39033 * 217.24912 * 18 17 15 31 31 H 1.08997 * 110.39825 * 94.99511 * 18 17 15 32 32 H 1.08994 * 115.55397 * 149.84993 * 22 20 19 33 33 H 1.08993 * 117.50237 * 359.97438 * 23 22 20 34 34 H 1.09006 * 117.49740 * 145.02816 * 23 22 20 35 35 H 1.09000 * 117.49344 * 214.97559 * 24 22 20 36 36 H 1.08996 * 117.49767 * 359.96801 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0463 1.4001 5 1 3.5417 1.4402 -0.7001 6 1 1.4417 2.6527 -0.7000 7 6 2.0080 -1.2089 -0.0059 8 1 1.4680 -2.1441 -0.0059 9 7 3.3692 -1.2089 -0.0116 10 6 4.0430 -2.3761 -0.0168 11 8 3.4355 -3.4283 -0.0167 12 6 5.5313 -2.3761 -0.0225 13 8 6.1386 -1.3245 -0.0221 14 7 6.2052 -3.5433 -0.0272 15 6 7.6702 -3.5433 -0.0322 16 1 8.0491 -2.6985 -0.6074 17 6 8.2166 -3.5035 1.4124 18 6 9.0214 -4.8194 1.5424 19 8 8.4492 -5.7026 0.5533 20 6 8.2095 -4.8732 -0.6043 21 1 9.1387 -4.7031 -1.1483 22 6 7.1683 -5.5202 -1.5199 23 6 6.5115 -6.8153 -1.0380 24 6 7.5351 -6.8531 -2.1755 25 1 -0.4850 0.8400 0.0004 26 1 3.8543 -0.3689 -0.0113 27 1 5.7202 -4.3833 -0.0271 28 1 8.8676 -2.6403 1.5508 29 1 7.3967 -3.4833 2.1304 30 1 8.9026 -5.2401 2.5409 31 1 10.0755 -4.6427 1.3289 32 1 6.5539 -4.8283 -2.0958 33 1 6.8214 -7.2065 -0.0691 34 1 5.4649 -6.9756 -1.2974 35 1 7.1616 -7.0381 -3.1826 36 1 8.5183 -7.2686 -1.9549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236404580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:03 Heat of formation + Delta-G solvation = -82.877860 kcal Electronic energy + Delta-G solvation = -20737.317104 eV Core-core repulsion = 17415.760565 eV Total energy + Delta-G solvation = -3321.556539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50929 -39.15468 -37.29546 -36.51494 -34.74233 -33.91105 -31.91624 -30.81263 -28.93311 -26.04049 -23.96694 -22.89548 -22.38427 -21.21840 -20.11358 -19.51582 -19.05053 -17.24222 -16.69131 -16.17872 -15.61219 -15.54641 -15.13931 -14.99663 -14.65550 -14.36436 -13.74681 -13.44794 -13.04044 -12.85091 -12.47354 -12.33931 -11.99064 -11.93279 -11.56852 -11.41808 -11.30107 -11.07766 -10.74813 -10.57432 -10.32473 -10.25633 -10.11751 -9.84980 -9.78789 -8.90293 -8.44317 -8.43229 -6.60394 -4.01903 2.25367 3.02517 3.05671 3.08692 3.21678 3.61979 3.74044 3.93967 4.09930 4.34343 4.53905 4.70947 4.80948 4.89242 4.95701 4.99688 5.11166 5.17250 5.26837 5.40582 5.49324 5.57160 5.63815 5.65072 5.79863 5.91326 5.97663 6.10391 6.23980 6.57429 6.72314 7.24478 7.64394 7.90524 8.22623 8.48802 8.72703 9.17556 9.59777 10.49682 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029385 B = 0.004766 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.625319 B = 5873.446966 C = 6425.310265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.053 3.947 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.308 4.308 8 H 0.128 0.872 9 N -0.527 5.527 10 C 0.403 3.597 11 O -0.577 6.577 12 C 0.513 3.487 13 O -0.551 6.551 14 N -0.699 5.699 15 C 0.119 3.881 16 H 0.103 0.897 17 C -0.168 4.168 18 C 0.046 3.954 19 O -0.366 6.366 20 C 0.100 3.900 21 H 0.085 0.915 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.173 4.173 25 H 0.281 0.719 26 H 0.384 0.616 27 H 0.416 0.584 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.394 -7.505 -0.548 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.155 4.155 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.164 5.164 10 C 0.188 3.812 11 O -0.463 6.463 12 C 0.298 3.702 13 O -0.428 6.428 14 N -0.354 5.354 15 C 0.013 3.987 16 H 0.121 0.879 17 C -0.207 4.207 18 C -0.031 4.031 19 O -0.285 6.285 20 C 0.042 3.958 21 H 0.103 0.897 22 C -0.182 4.182 23 C -0.200 4.200 24 C -0.210 4.210 25 H 0.092 0.908 26 H 0.218 0.782 27 H 0.254 0.746 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.170 -7.553 -0.530 18.765 hybrid contribution 0.383 1.270 0.034 1.327 sum 17.553 -6.282 -0.496 18.650 Atomic orbital electron populations 1.69443 1.06114 1.28652 1.44395 1.25231 0.95541 0.98573 0.96203 0.86676 0.80412 0.83069 0.79786 1.18902 1.18465 1.19515 1.19565 0.79120 0.97091 1.48032 0.85483 1.41832 1.07576 1.06912 1.60068 1.18816 0.86378 0.85312 0.90695 1.90627 1.68704 1.30310 1.56668 1.20701 0.89915 0.83580 0.76006 1.90669 1.70864 1.31373 1.49942 1.45734 1.05513 1.09680 1.74457 1.22259 0.81425 0.98649 0.96326 0.87860 1.23489 1.01142 0.98481 0.97558 1.23452 0.96517 0.89701 0.93407 1.89142 1.82867 1.32418 1.24038 1.22705 0.97149 0.88559 0.87428 0.89703 1.22300 1.01752 0.91613 1.02535 1.22952 0.98215 0.99393 0.99442 1.22937 1.00569 0.99768 0.97768 0.90767 0.78174 0.74628 0.89702 0.89728 0.88894 0.92148 0.86143 0.87619 0.88433 0.88820 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.55 13.94 55.53 0.77 -22.78 16 2 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 3 Si 0.88 19.27 27.75 -169.99 -4.72 14.56 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.26 -5.54 6.52 56.52 0.37 -5.18 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.31 -8.59 10.16 -15.15 -0.15 -8.75 16 8 H 0.13 3.94 7.36 -52.49 -0.39 3.56 16 9 N -0.53 -13.27 5.06 -11.59 -0.06 -13.33 16 10 C 0.40 9.75 7.82 -11.87 -0.09 9.65 16 11 O -0.58 -15.21 16.03 5.37 0.09 -15.12 16 12 C 0.51 10.45 7.87 -11.88 -0.09 10.36 16 13 O -0.55 -11.79 16.15 5.42 0.09 -11.71 16 14 N -0.70 -11.44 4.19 -52.91 -0.22 -11.66 16 15 C 0.12 1.56 3.29 -66.36 -0.22 1.34 16 16 H 0.10 1.37 7.61 -51.93 -0.40 0.98 16 17 C -0.17 -1.92 6.90 -25.00 -0.17 -2.09 16 18 C 0.05 0.44 7.64 38.10 0.29 0.73 16 19 O -0.37 -4.26 9.79 -35.23 -0.34 -4.60 16 20 C 0.10 1.11 3.59 -25.95 -0.09 1.02 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 22 C -0.16 -1.90 4.18 -90.62 -0.38 -2.28 16 23 C -0.16 -1.88 9.66 -26.69 -0.26 -2.14 16 24 C -0.17 -1.75 10.25 -26.69 -0.27 -2.02 16 25 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 26 H 0.38 9.07 5.21 -40.82 -0.21 8.86 16 27 H 0.42 6.84 6.67 -40.82 -0.27 6.57 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.10 7.97 -51.93 -0.41 0.69 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 1.53 7.71 -51.93 -0.40 1.13 16 33 H 0.11 1.27 7.07 -51.93 -0.37 0.90 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -30.52 305.40 -5.91 -36.43 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -4.57 Total: 16.48 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.54 Total: 7.13 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.49 Total: -47.77 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.17 Total: -31.43 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.72 Total: 14.56 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.52 -5.91 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236404580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.447 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds