Wall clock time and date at job start Mon Mar 30 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00307 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00155 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00190 * 3 2 1 7 7 C 1.39582 * 119.99365 * 180.27807 * 2 1 3 8 8 H 1.07992 * 120.00720 * 359.72526 * 7 2 1 9 9 N 1.36124 * 119.99404 * 179.71906 * 7 2 1 10 10 C 1.34777 * 119.99618 * 179.97438 * 9 7 2 11 11 O 1.21493 * 120.00329 * 0.02562 * 10 9 7 12 12 C 1.48832 * 119.99764 * 180.02562 * 10 9 7 13 13 O 1.21443 * 120.00346 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00135 * 179.97438 * 12 10 9 15 15 C 1.46505 * 120.00095 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.45489 * 325.70091 * 15 14 12 17 17 C 1.54503 * 110.51188 * 88.31027 * 15 14 12 18 18 C 1.54796 * 103.91408 * 118.61045 * 17 15 14 19 19 O 1.44418 * 104.85567 * 336.11888 * 18 17 15 20 20 C 1.44416 * 105.27891 * 40.46263 * 19 18 17 21 21 H 1.09006 * 110.37767 * 78.31687 * 20 19 18 22 22 C 1.53001 * 110.47262 * 200.60995 * 20 19 18 23 23 C 1.53002 * 117.49195 * 4.18024 * 22 20 19 24 24 C 1.53001 * 117.49481 * 295.52547 * 22 20 19 25 25 H 0.96999 * 119.99900 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00489 * 0.02562 * 9 7 2 27 27 H 0.97000 * 120.00112 * 0.02562 * 14 12 10 28 28 H 1.09001 * 110.51208 * 237.29032 * 17 15 14 29 29 H 1.09003 * 110.51084 * 359.97438 * 17 15 14 30 30 H 1.09001 * 110.39033 * 217.24912 * 18 17 15 31 31 H 1.08997 * 110.39825 * 94.99511 * 18 17 15 32 32 H 1.08994 * 115.55397 * 149.84993 * 22 20 19 33 33 H 1.08993 * 117.50237 * 359.97438 * 23 22 20 34 34 H 1.09006 * 117.49740 * 145.02816 * 23 22 20 35 35 H 1.09000 * 117.49344 * 214.97559 * 24 22 20 36 36 H 1.08996 * 117.49767 * 359.96801 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0463 1.4001 5 1 3.5417 1.4402 -0.7001 6 1 1.4417 2.6527 -0.7000 7 6 2.0080 -1.2089 -0.0059 8 1 1.4680 -2.1441 -0.0059 9 7 3.3692 -1.2089 -0.0116 10 6 4.0430 -2.3761 -0.0168 11 8 3.4355 -3.4283 -0.0167 12 6 5.5313 -2.3761 -0.0225 13 8 6.1386 -1.3245 -0.0221 14 7 6.2052 -3.5433 -0.0272 15 6 7.6702 -3.5433 -0.0322 16 1 8.0491 -2.6985 -0.6074 17 6 8.2166 -3.5035 1.4124 18 6 9.0214 -4.8194 1.5424 19 8 8.4492 -5.7026 0.5533 20 6 8.2095 -4.8732 -0.6043 21 1 9.1387 -4.7031 -1.1483 22 6 7.1683 -5.5202 -1.5199 23 6 6.5115 -6.8153 -1.0380 24 6 7.5351 -6.8531 -2.1755 25 1 -0.4850 0.8400 0.0004 26 1 3.8543 -0.3689 -0.0113 27 1 5.7202 -4.3833 -0.0271 28 1 8.8676 -2.6403 1.5508 29 1 7.3967 -3.4833 2.1304 30 1 8.9026 -5.2401 2.5409 31 1 10.0755 -4.6427 1.3289 32 1 6.5539 -4.8283 -2.0958 33 1 6.8214 -7.2065 -0.0691 34 1 5.4649 -6.9756 -1.2974 35 1 7.1616 -7.0381 -3.1826 36 1 8.5183 -7.2686 -1.9549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236404580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:02 Heat of formation + Delta-G solvation = -105.465406 kcal Electronic energy + Delta-G solvation = -20738.296574 eV Core-core repulsion = 17415.760565 eV Total energy + Delta-G solvation = -3322.536008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78897 -40.63008 -39.08464 -37.38523 -36.55192 -35.48365 -33.95817 -31.88948 -29.91084 -27.97341 -25.21361 -24.24071 -23.25698 -22.27107 -21.47954 -21.03259 -20.84049 -18.90174 -18.03327 -17.41411 -17.09483 -16.69028 -16.51311 -16.46766 -15.89677 -15.60724 -15.35204 -14.81357 -14.69008 -14.49652 -14.38421 -13.49860 -13.10399 -12.94426 -12.89708 -12.57236 -12.49845 -12.47457 -12.27377 -12.01593 -11.91367 -11.72706 -11.19467 -11.12478 -10.73942 -10.49153 -10.36903 -10.21378 -8.63767 -6.17993 0.48647 1.27866 1.32229 1.38067 1.67652 2.09149 2.25562 2.75548 2.85855 3.03244 3.05769 3.45649 3.59337 3.78459 3.93821 4.03319 4.07780 4.13309 4.26379 4.41595 4.50901 4.62119 4.82660 4.84489 4.89180 5.00362 5.06029 5.23561 5.25015 5.29373 5.34266 5.72164 5.82697 6.06061 6.34661 6.56784 6.87791 7.12788 7.60534 8.50811 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029385 B = 0.004766 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.625319 B = 5873.446966 C = 6425.310265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.252 1.252 5 H -0.248 1.248 6 H -0.256 1.256 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.531 5.531 10 C 0.404 3.596 11 O -0.603 6.603 12 C 0.524 3.476 13 O -0.557 6.557 14 N -0.681 5.681 15 C 0.109 3.891 16 H 0.107 0.893 17 C -0.166 4.166 18 C 0.049 3.951 19 O -0.379 6.379 20 C 0.108 3.892 21 H 0.113 0.887 22 C -0.176 4.176 23 C -0.176 4.176 24 C -0.152 4.152 25 H 0.291 0.709 26 H 0.393 0.607 27 H 0.415 0.585 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.592 -6.815 -0.653 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.193 4.193 3 Si 0.768 3.232 4 H -0.176 1.176 5 H -0.172 1.172 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.169 5.169 10 C 0.189 3.811 11 O -0.491 6.491 12 C 0.306 3.694 13 O -0.436 6.436 14 N -0.334 5.334 15 C 0.004 3.996 16 H 0.125 0.875 17 C -0.205 4.205 18 C -0.028 4.028 19 O -0.298 6.298 20 C 0.050 3.950 21 H 0.130 0.870 22 C -0.194 4.194 23 C -0.213 4.213 24 C -0.189 4.189 25 H 0.101 0.899 26 H 0.229 0.771 27 H 0.253 0.747 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.383 -6.892 -0.631 21.526 hybrid contribution -0.579 0.870 0.075 1.048 sum 19.804 -6.023 -0.555 20.707 Atomic orbital electron populations 1.69550 1.07917 1.30404 1.45019 1.26086 0.96364 1.02214 0.94674 0.85584 0.79378 0.77588 0.80634 1.17558 1.17170 1.18023 1.19171 0.80407 0.96060 1.51283 0.90491 1.41695 1.06625 1.07664 1.60919 1.19677 0.88427 0.84614 0.88428 1.90607 1.70138 1.31355 1.56969 1.19872 0.87887 0.84728 0.76870 1.90667 1.70297 1.31751 1.50885 1.45748 1.07292 1.08193 1.72162 1.22652 0.78672 1.00214 0.98032 0.87547 1.23477 1.01014 1.00491 0.95525 1.23602 0.97424 0.88160 0.93568 1.89140 1.83224 1.32968 1.24509 1.22732 0.97788 0.87078 0.87355 0.86993 1.22295 1.02190 0.91817 1.03131 1.22917 0.98300 0.99979 1.00082 1.22996 1.00483 0.97828 0.97585 0.89887 0.77066 0.74685 0.88092 0.91689 0.87899 0.89415 0.87608 0.88064 0.89332 0.87860 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.76 13.94 21.76 0.30 -50.46 16 2 C 0.01 0.63 5.51 85.14 0.47 1.10 16 3 Si 0.95 39.19 27.75 68.60 1.90 41.09 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.25 -9.67 6.52 99.48 0.65 -9.02 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.34 -19.73 10.16 84.35 0.86 -18.87 16 8 H 0.08 5.14 7.36 -2.91 -0.02 5.11 16 9 N -0.53 -27.15 5.06 -308.88 -1.56 -28.71 16 10 C 0.40 19.86 7.82 87.08 0.68 20.54 16 11 O -0.60 -32.99 16.03 -3.69 -0.06 -33.05 16 12 C 0.52 21.01 7.87 87.08 0.69 21.70 16 13 O -0.56 -22.96 16.15 -3.54 -0.06 -23.02 16 14 N -0.68 -21.72 4.19 -439.63 -1.84 -23.56 16 15 C 0.11 2.59 3.29 46.01 0.15 2.74 16 16 H 0.11 2.54 7.61 -2.39 -0.02 2.52 16 17 C -0.17 -3.38 6.90 31.72 0.22 -3.16 16 18 C 0.05 0.77 7.64 72.60 0.55 1.33 16 19 O -0.38 -7.78 9.79 -148.98 -1.46 -9.24 16 20 C 0.11 2.13 3.59 31.10 0.11 2.24 16 21 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 22 C -0.18 -3.82 4.18 -10.79 -0.05 -3.86 16 23 C -0.18 -3.92 9.66 30.62 0.30 -3.62 16 24 C -0.15 -2.74 10.25 30.62 0.31 -2.43 16 25 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 26 H 0.39 18.34 5.21 -92.71 -0.48 17.85 16 27 H 0.42 13.61 6.67 -92.71 -0.62 12.99 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.59 7.97 -2.39 -0.02 1.58 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 2.61 7.71 -2.39 -0.02 2.60 16 33 H 0.10 2.35 7.07 -2.39 -0.02 2.33 16 34 H 0.09 2.09 8.14 -2.38 -0.02 2.08 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.96 305.40 1.48 -66.48 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.04 Total: 42.76 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 4.29 Total: 17.71 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.10 Total: -102.73 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -1.57 Total: -65.30 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Total: -67.96 1.48 -66.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236404580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.990 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds