Wall clock time and date at job start Mon Mar 30 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47539 * 269.99982 * 3 2 1 5 5 H 1.48500 * 109.47547 * 30.00107 * 3 2 1 6 6 H 1.48509 * 109.47154 * 149.99933 * 3 2 1 7 7 C 1.37879 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99614 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.53003 * 109.47222 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47463 * 184.99804 * 12 9 7 14 14 N 1.31134 * 126.55290 * 89.70469 * 13 12 9 15 15 C 1.34489 * 105.61636 * 179.97438 * 14 13 12 16 16 C 1.50699 * 126.28990 * 180.13543 * 15 14 13 17 17 H 1.09003 * 109.51601 * 0.28068 * 16 15 14 18 18 C 1.53184 * 109.51842 * 240.16258 * 16 15 14 19 19 C 1.53187 * 109.02848 * 183.17535 * 18 16 15 20 20 C 1.53082 * 109.21710 * 56.88140 * 19 18 16 21 21 O 1.42903 * 109.41710 * 302.42348 * 20 19 18 22 22 C 1.42904 * 114.09432 * 61.16116 * 21 20 19 23 23 N 1.29947 * 107.42355 * 0.34926 * 15 14 13 24 24 O 1.21299 * 110.25125 * 359.78410 * 23 15 14 25 25 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 27 27 H 1.09005 * 109.46682 * 304.99605 * 12 9 7 28 28 H 1.08999 * 109.47221 * 64.99771 * 12 9 7 29 29 H 1.09002 * 109.54239 * 302.97206 * 18 16 15 30 30 H 1.08991 * 109.54644 * 63.24120 * 18 16 15 31 31 H 1.09005 * 109.46720 * 296.97676 * 19 18 16 32 32 H 1.08999 * 109.57452 * 176.85785 * 19 18 16 33 33 H 1.09000 * 109.48264 * 182.44307 * 20 19 18 34 34 H 1.09004 * 109.48213 * 62.40995 * 20 19 18 35 35 H 1.09008 * 109.47819 * 178.86156 * 22 21 20 36 36 H 1.08995 * 109.48297 * 58.82412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6807 0.8905 11 8 3.9883 -0.5197 -1.1662 12 6 4.0216 -2.6365 -0.0014 13 6 5.5235 -2.6385 0.1230 14 7 6.2148 -2.6658 1.2369 15 6 7.5063 -2.6560 0.8618 16 6 8.7018 -2.6812 1.7790 17 1 8.3651 -2.7142 2.8152 18 6 9.5455 -1.4224 1.5547 19 6 10.7976 -1.4972 2.4341 20 6 11.5669 -2.7798 2.1074 21 8 10.7147 -3.9091 2.3085 22 6 9.5521 -3.9180 1.4776 23 7 7.5340 -2.6162 -0.4368 24 8 6.4052 -2.6054 -0.8807 25 1 -0.4850 0.8400 -0.0004 26 1 3.7033 -0.9227 -1.9977 27 1 3.5867 -3.1765 0.8398 28 1 3.7336 -3.1229 -0.9334 29 1 9.8400 -1.3628 0.5070 30 1 8.9632 -0.5407 1.8219 31 1 10.5042 -1.5058 3.4839 32 1 11.4321 -0.6324 2.2403 33 1 12.4356 -2.8591 2.7610 34 1 11.8949 -2.7523 1.0683 35 1 8.9693 -4.8172 1.6775 36 1 9.8537 -3.9054 0.4303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236510388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:26 Heat of formation + Delta-G solvation = -43.142201 kcal Electronic energy + Delta-G solvation = -20505.676653 eV Core-core repulsion = 17185.843181 eV Total energy + Delta-G solvation = -3319.833471 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.27186 -39.64247 -36.79690 -35.89515 -34.10355 -32.80793 -32.41212 -31.15979 -29.57557 -26.21971 -25.40904 -24.90145 -23.21233 -21.94185 -20.99097 -19.90277 -17.84318 -17.73098 -17.02316 -16.48600 -16.19787 -15.17832 -15.11093 -14.85136 -14.51010 -14.34020 -14.22411 -13.87469 -13.08465 -12.93855 -12.85017 -12.44781 -11.94005 -11.84430 -11.53509 -11.43649 -11.36439 -11.09348 -10.97679 -10.84936 -10.73025 -10.58738 -10.14830 -9.86261 -9.62558 -9.30104 -8.77643 -8.70100 -6.26113 -4.40713 1.45878 2.45960 3.20023 3.37919 3.41529 3.42567 3.54013 3.85520 4.17668 4.39424 4.54559 4.59321 4.63754 4.69600 4.92717 5.02684 5.10721 5.22187 5.34310 5.42105 5.48028 5.59602 5.62972 5.66661 5.75666 5.82383 5.83784 6.00141 6.02628 6.28653 6.34646 6.85207 7.07094 7.34951 8.11437 8.45184 8.64298 8.82026 9.35368 10.83518 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.004201 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.792682 B = 6663.131542 C = 7010.508113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.199 3.801 10 H 0.069 0.931 11 O -0.586 6.586 12 C -0.051 4.051 13 C 0.216 3.784 14 N -0.494 5.494 15 C 0.168 3.832 16 C -0.027 4.027 17 H 0.108 0.892 18 C -0.116 4.116 19 C -0.153 4.153 20 C 0.056 3.944 21 O -0.377 6.377 22 C 0.073 3.927 23 N -0.393 5.393 24 O 0.077 5.923 25 H 0.268 0.732 26 H 0.366 0.634 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.854 -5.412 2.057 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.119 4.119 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.603 4.603 8 H 0.099 0.901 9 C 0.140 3.860 10 H 0.086 0.914 11 O -0.393 6.393 12 C -0.091 4.091 13 C -0.004 4.004 14 N -0.227 5.227 15 C -0.105 4.105 16 C -0.047 4.047 17 H 0.127 0.873 18 C -0.154 4.154 19 C -0.191 4.191 20 C -0.020 4.020 21 O -0.295 6.295 22 C -0.005 4.005 23 N -0.102 5.102 24 O 0.020 5.980 25 H 0.078 0.922 26 H 0.213 0.787 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.810 -5.078 2.620 20.617 hybrid contribution -0.297 0.800 -0.614 1.052 sum 19.512 -4.278 2.006 20.076 Atomic orbital electron populations 1.69933 1.06592 1.27779 1.47890 1.24970 0.94694 0.99927 0.92302 0.86269 0.79166 0.81717 0.78684 1.20216 1.23084 1.19454 1.21364 0.88721 0.95341 1.54876 0.90148 1.19984 0.94494 0.85188 0.86321 0.91353 1.86433 1.77493 1.58508 1.16839 1.21304 0.78280 1.03850 1.05660 1.29305 0.98230 0.92117 0.80705 1.71926 1.01474 1.21988 1.27334 1.25415 0.93766 1.01688 0.89671 1.20135 0.88971 0.97537 0.98085 0.87348 1.21653 0.96003 0.96867 1.00897 1.22193 0.97111 0.98798 1.01001 1.22649 0.92879 0.85401 1.01100 1.87965 1.34432 1.44100 1.62978 1.22555 0.86163 0.97037 0.94739 1.74499 1.00934 1.21886 1.12901 1.85272 1.10697 1.65573 1.36497 0.92228 0.78661 0.86740 0.88285 0.90961 0.90767 0.90581 0.90290 0.88569 0.92954 0.88395 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 2 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.91 22.54 26.18 -169.99 -4.45 18.09 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 7 C -0.57 -14.57 9.34 -34.44 -0.32 -14.90 16 8 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.20 4.34 2.29 -27.88 -0.06 4.28 16 10 H 0.07 1.63 7.20 -51.93 -0.37 1.26 16 11 O -0.59 -12.56 10.78 -35.23 -0.38 -12.94 16 12 C -0.05 -0.90 5.46 -27.88 -0.15 -1.05 16 13 C 0.22 3.83 7.54 -13.06 -0.10 3.73 16 14 N -0.49 -8.96 11.55 -9.87 -0.11 -9.08 16 15 C 0.17 2.73 6.73 -156.38 -1.05 1.68 16 16 C -0.03 -0.35 2.86 -91.63 -0.26 -0.61 16 17 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.12 -1.31 5.30 -26.54 -0.14 -1.45 16 19 C -0.15 -1.32 6.13 -26.59 -0.16 -1.49 16 20 C 0.06 0.49 6.84 37.20 0.25 0.74 16 21 O -0.38 -4.25 10.77 -35.23 -0.38 -4.63 16 22 C 0.07 0.84 6.11 37.20 0.23 1.07 16 23 N -0.39 -6.69 12.16 30.90 0.38 -6.32 16 24 O 0.08 1.35 11.31 18.11 0.20 1.56 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.37 6.59 9.04 45.56 0.41 7.00 16 27 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 28 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -30.82 303.63 -5.46 -36.28 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.20 Total: 3.16 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.87 Total: -5.71 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 1.04 Total: -40.39 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.55 Total: -16.01 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.45 Total: 18.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.82 -5.46 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236510388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.860 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds