Wall clock time and date at job start Mon Mar 30 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47539 * 269.99982 * 3 2 1 5 5 H 1.48500 * 109.47547 * 30.00107 * 3 2 1 6 6 H 1.48509 * 109.47154 * 149.99933 * 3 2 1 7 7 C 1.37879 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99614 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.53003 * 109.47222 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47463 * 184.99804 * 12 9 7 14 14 N 1.31134 * 126.55290 * 89.70469 * 13 12 9 15 15 C 1.34489 * 105.61636 * 179.97438 * 14 13 12 16 16 C 1.50699 * 126.28990 * 180.13543 * 15 14 13 17 17 H 1.09003 * 109.51601 * 0.28068 * 16 15 14 18 18 C 1.53184 * 109.51842 * 240.16258 * 16 15 14 19 19 C 1.53187 * 109.02848 * 183.17535 * 18 16 15 20 20 C 1.53082 * 109.21710 * 56.88140 * 19 18 16 21 21 O 1.42903 * 109.41710 * 302.42348 * 20 19 18 22 22 C 1.42904 * 114.09432 * 61.16116 * 21 20 19 23 23 N 1.29947 * 107.42355 * 0.34926 * 15 14 13 24 24 O 1.21299 * 110.25125 * 359.78410 * 23 15 14 25 25 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 27 27 H 1.09005 * 109.46682 * 304.99605 * 12 9 7 28 28 H 1.08999 * 109.47221 * 64.99771 * 12 9 7 29 29 H 1.09002 * 109.54239 * 302.97206 * 18 16 15 30 30 H 1.08991 * 109.54644 * 63.24120 * 18 16 15 31 31 H 1.09005 * 109.46720 * 296.97676 * 19 18 16 32 32 H 1.08999 * 109.57452 * 176.85785 * 19 18 16 33 33 H 1.09000 * 109.48264 * 182.44307 * 20 19 18 34 34 H 1.09004 * 109.48213 * 62.40995 * 20 19 18 35 35 H 1.09008 * 109.47819 * 178.86156 * 22 21 20 36 36 H 1.08995 * 109.48297 * 58.82412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6807 0.8905 11 8 3.9883 -0.5197 -1.1662 12 6 4.0216 -2.6365 -0.0014 13 6 5.5235 -2.6385 0.1230 14 7 6.2148 -2.6658 1.2369 15 6 7.5063 -2.6560 0.8618 16 6 8.7018 -2.6812 1.7790 17 1 8.3651 -2.7142 2.8152 18 6 9.5455 -1.4224 1.5547 19 6 10.7976 -1.4972 2.4341 20 6 11.5669 -2.7798 2.1074 21 8 10.7147 -3.9091 2.3085 22 6 9.5521 -3.9180 1.4776 23 7 7.5340 -2.6162 -0.4368 24 8 6.4052 -2.6054 -0.8807 25 1 -0.4850 0.8400 -0.0004 26 1 3.7033 -0.9227 -1.9977 27 1 3.5867 -3.1765 0.8398 28 1 3.7336 -3.1229 -0.9334 29 1 9.8400 -1.3628 0.5070 30 1 8.9632 -0.5407 1.8219 31 1 10.5042 -1.5058 3.4839 32 1 11.4321 -0.6324 2.2403 33 1 12.4356 -2.8591 2.7610 34 1 11.8949 -2.7523 1.0683 35 1 8.9693 -4.8172 1.6775 36 1 9.8537 -3.9054 0.4303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236510388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:25 Heat of formation + Delta-G solvation = -67.557233 kcal Electronic energy + Delta-G solvation = -20506.735368 eV Core-core repulsion = 17185.843181 eV Total energy + Delta-G solvation = -3320.892187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.61248 -40.49447 -38.50851 -37.13789 -35.25726 -34.47492 -33.92095 -32.21467 -31.09110 -28.04093 -26.25487 -25.91815 -24.60572 -23.25353 -22.40712 -20.96787 -19.60213 -19.10241 -18.45780 -17.36592 -17.08368 -16.98509 -16.35595 -16.14514 -15.94003 -15.77051 -15.44099 -14.94241 -14.86489 -14.08373 -13.84426 -13.73527 -13.59474 -13.09375 -13.01333 -12.84106 -12.63766 -12.52648 -12.27034 -12.11919 -12.00185 -11.84329 -11.56189 -11.36513 -11.02451 -10.88739 -10.60568 -10.41760 -8.37984 -6.52847 0.09654 1.13759 1.40230 1.41988 1.55956 1.82607 2.35332 2.40197 2.87470 2.96551 3.00400 3.60398 3.64806 3.74437 3.85474 3.95142 4.06916 4.16298 4.20156 4.31539 4.35339 4.53546 4.60518 4.65576 4.73712 4.78773 4.90077 4.94485 4.98348 5.01020 5.20675 5.31950 5.39679 6.05336 6.07125 6.61072 7.10461 7.13179 7.28740 8.75263 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.004201 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.792682 B = 6663.131542 C = 7010.508113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.040 3.960 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.062 0.938 9 C 0.206 3.794 10 H 0.049 0.951 11 O -0.592 6.592 12 C -0.040 4.040 13 C 0.213 3.787 14 N -0.512 5.512 15 C 0.171 3.829 16 C -0.028 4.028 17 H 0.108 0.892 18 C -0.114 4.114 19 C -0.146 4.146 20 C 0.050 3.950 21 O -0.388 6.388 22 C 0.080 3.920 23 N -0.399 5.399 24 O 0.072 5.928 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.962 -5.469 2.090 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.162 4.162 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.595 4.595 8 H 0.080 0.920 9 C 0.147 3.853 10 H 0.067 0.933 11 O -0.401 6.401 12 C -0.079 4.079 13 C -0.006 4.006 14 N -0.247 5.247 15 C -0.102 4.102 16 C -0.049 4.049 17 H 0.126 0.874 18 C -0.153 4.153 19 C -0.184 4.184 20 C -0.026 4.026 21 O -0.306 6.306 22 C 0.002 3.998 23 N -0.110 5.110 24 O 0.017 5.983 25 H 0.079 0.921 26 H 0.232 0.768 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.925 -5.142 2.632 22.673 hybrid contribution -0.899 0.771 -0.623 1.338 sum 21.026 -4.370 2.010 21.569 Atomic orbital electron populations 1.70025 1.07910 1.28475 1.50337 1.25629 0.95143 1.02722 0.92674 0.85453 0.77755 0.78949 0.78599 1.19808 1.23072 1.19879 1.21670 0.90849 0.94262 1.52758 0.91966 1.19667 0.91988 0.87661 0.85939 0.93332 1.86363 1.77256 1.58992 1.17496 1.21087 0.78225 1.01092 1.07516 1.29219 0.98224 0.92300 0.80850 1.71942 1.02476 1.22432 1.27801 1.25984 0.94094 1.00303 0.89839 1.20331 0.88229 0.99067 0.97245 0.87394 1.21655 0.96870 0.95534 1.01229 1.22177 0.96016 0.99779 1.00385 1.22893 0.93049 0.84434 1.02225 1.87959 1.34356 1.45343 1.62964 1.22438 0.86279 0.96316 0.94724 1.74492 1.00701 1.22523 1.13296 1.85259 1.10831 1.65732 1.36480 0.92128 0.76756 0.86059 0.85638 0.91502 0.91844 0.90383 0.88204 0.86235 0.92302 0.88336 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.96 21.45 0.30 -54.19 16 2 C 0.04 2.17 5.47 84.65 0.46 2.64 16 3 Si 0.96 46.22 26.18 68.60 1.80 48.02 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -13.19 6.54 99.48 0.65 -12.54 16 7 C -0.56 -28.51 9.34 25.60 0.24 -28.27 16 8 H 0.06 3.36 7.99 -2.92 -0.02 3.34 16 9 C 0.21 8.78 2.29 29.85 0.07 8.85 16 10 H 0.05 2.28 7.20 -2.39 -0.02 2.27 16 11 O -0.59 -24.30 10.78 -148.98 -1.61 -25.91 16 12 C -0.04 -1.34 5.46 29.85 0.16 -1.17 16 13 C 0.21 7.29 7.54 88.38 0.67 7.96 16 14 N -0.51 -18.07 11.55 -303.20 -3.50 -21.57 16 15 C 0.17 5.37 6.73 138.46 0.93 6.31 16 16 C -0.03 -0.69 2.86 -11.45 -0.03 -0.72 16 17 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 18 C -0.11 -2.42 5.30 30.72 0.16 -2.25 16 19 C -0.15 -2.16 6.13 30.68 0.19 -1.97 16 20 C 0.05 0.73 6.84 72.01 0.49 1.22 16 21 O -0.39 -7.97 10.77 -148.98 -1.60 -9.57 16 22 C 0.08 1.74 6.11 72.01 0.44 2.18 16 23 N -0.40 -13.13 12.16 -60.33 -0.73 -13.86 16 24 O 0.07 2.44 11.31 74.87 0.85 3.29 16 25 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.38 12.95 9.04 -74.06 -0.67 12.28 16 27 H 0.12 3.90 8.14 -2.38 -0.02 3.88 16 28 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -64.62 303.63 -0.35 -64.97 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.37 Total: 14.06 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.78 Total: -5.23 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -3.94 Total: -89.62 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -2.36 Total: -32.20 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.80 Total: 48.02 kcal Total: -64.62 -0.35 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236510388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.589 kcal (2) G-P(sol) polarization free energy of solvation -64.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds