Wall clock time and date at job start Mon Mar 30 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47327 * 240.00155 * 3 2 1 5 5 H 1.48495 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46553 * 120.00399 * 3 2 1 7 7 C 1.37873 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00440 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99907 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46835 * 300.00225 * 9 7 2 11 11 O 1.42898 * 109.47013 * 60.00034 * 9 7 2 12 12 C 1.52997 * 109.47106 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47061 * 174.99793 * 12 9 7 14 14 N 1.31135 * 126.54979 * 90.25254 * 13 12 9 15 15 C 1.34495 * 105.61295 * 180.12260 * 14 13 12 16 16 C 1.50706 * 126.28887 * 179.90269 * 15 14 13 17 17 C 1.53174 * 109.54626 * 239.53751 * 16 15 14 18 18 C 1.53101 * 109.15937 * 183.23946 * 17 16 15 19 19 O 1.42905 * 109.48696 * 57.47245 * 18 17 16 20 20 C 1.42907 * 114.09607 * 298.88977 * 19 18 17 21 21 C 1.53088 * 109.41297 * 61.16001 * 20 19 18 22 22 N 1.29946 * 107.42776 * 359.64154 * 15 14 13 23 23 O 1.21298 * 110.25077 * 0.22437 * 22 15 14 24 24 H 0.97001 * 119.99960 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99801 * 60.00746 * 11 9 7 26 26 H 1.08996 * 109.47062 * 54.99905 * 12 9 7 27 27 H 1.09000 * 109.46991 * 294.99542 * 12 9 7 28 28 H 1.09005 * 109.53598 * 359.71078 * 16 15 14 29 29 H 1.09009 * 109.51767 * 303.05657 * 17 16 15 30 30 H 1.09001 * 109.52257 * 63.23956 * 17 16 15 31 31 H 1.08998 * 109.40426 * 297.49340 * 18 17 16 32 32 H 1.08997 * 109.48251 * 177.49797 * 18 17 16 33 33 H 1.08997 * 109.47920 * 301.17522 * 20 19 18 34 34 H 1.09000 * 109.48176 * 181.13932 * 20 19 18 35 35 H 1.09007 * 109.52143 * 182.48293 * 21 20 19 36 36 H 1.08999 * 109.58098 * 62.33070 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 8 0.4290 -2.5745 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 6 1.4957 -4.9636 0.1233 14 7 1.0416 -5.7001 -0.8620 15 6 0.4445 -6.7553 -0.2799 16 6 -0.2394 -7.8961 -0.9884 17 6 -1.7063 -7.9643 -0.5529 18 6 -2.3714 -9.1739 -1.2151 19 8 -1.6601 -10.3619 -0.8615 20 6 -0.2959 -10.3735 -1.2868 21 6 0.4531 -9.2135 -0.6258 22 7 0.5705 -6.6134 1.0057 23 8 1.1714 -5.5905 1.2583 24 1 -0.4850 0.8401 0.0004 25 1 0.9208 -2.5291 -1.9983 26 1 2.9293 -3.5552 0.8412 27 1 2.8113 -3.6560 -0.9320 28 1 -0.1858 -7.7405 -2.0660 29 1 -1.7600 -8.0685 0.5309 30 1 -2.2196 -7.0523 -0.8579 31 1 -2.3546 -9.0488 -2.2977 32 1 -3.4036 -9.2532 -0.8740 33 1 -0.2520 -10.2641 -2.3704 34 1 0.1671 -11.3169 -0.9975 35 1 1.4828 -9.1941 -0.9829 36 1 0.4454 -9.3431 0.4564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236552502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:49 Heat of formation + Delta-G solvation = -45.528827 kcal Electronic energy + Delta-G solvation = -20420.316614 eV Core-core repulsion = 17100.379651 eV Total energy + Delta-G solvation = -3319.936963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.10323 -39.53588 -36.36816 -35.84281 -33.92825 -32.24599 -32.03528 -31.33916 -29.34560 -26.13489 -25.82853 -23.77350 -23.16017 -22.19211 -21.02594 -19.67714 -17.65888 -17.41043 -16.79061 -16.33528 -16.18694 -15.00009 -14.78736 -14.68134 -14.52023 -14.26624 -14.09034 -13.68967 -13.08127 -12.77529 -12.65181 -12.28235 -11.61549 -11.53176 -11.49366 -11.32889 -11.14787 -10.93959 -10.86862 -10.71484 -10.63141 -10.45035 -10.18952 -9.82137 -9.70016 -9.11643 -8.68727 -8.30268 -6.11713 -4.32515 1.62400 2.65713 3.24178 3.29586 3.30451 3.36411 3.63150 3.85643 4.29430 4.33126 4.58082 4.75908 4.76527 4.87327 5.00784 5.15948 5.18234 5.32843 5.43006 5.45212 5.62473 5.63905 5.77371 5.83074 5.92049 5.99231 6.11991 6.15109 6.27936 6.44509 6.56352 6.95855 7.48746 7.70227 7.97210 8.61942 8.69284 9.26222 9.45155 10.92572 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.046597 B = 0.003732 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.757017 B = 7500.090721 C = 7766.150423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.577 4.577 8 H 0.061 0.939 9 C 0.237 3.763 10 H 0.061 0.939 11 O -0.559 6.559 12 C -0.062 4.062 13 C 0.216 3.784 14 N -0.486 5.486 15 C 0.169 3.831 16 C 0.007 3.993 17 C -0.150 4.150 18 C 0.064 3.936 19 O -0.383 6.383 20 C 0.064 3.936 21 C -0.148 4.148 22 N -0.395 5.395 23 O 0.065 5.935 24 H 0.263 0.737 25 H 0.349 0.651 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -15.991 -2.794 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.615 4.615 8 H 0.080 0.920 9 C 0.178 3.822 10 H 0.079 0.921 11 O -0.361 6.361 12 C -0.102 4.102 13 C -0.003 4.003 14 N -0.219 5.219 15 C -0.105 4.105 16 C -0.013 4.013 17 C -0.188 4.188 18 C -0.012 4.012 19 O -0.302 6.302 20 C -0.013 4.013 21 C -0.187 4.187 22 N -0.105 5.105 23 O 0.009 5.991 24 H 0.073 0.927 25 H 0.194 0.806 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.621 -16.758 -2.074 16.897 hybrid contribution 1.192 1.545 -0.418 1.995 sum 0.571 -15.213 -2.492 15.427 Atomic orbital electron populations 1.70070 1.06052 1.26912 1.46070 1.25034 0.94727 0.99318 0.93524 0.86637 0.79638 0.82735 0.78805 1.20003 1.21166 1.19997 1.21484 0.93264 0.90748 1.56019 0.92036 1.19401 0.87590 0.88179 0.87011 0.92106 1.86598 1.38122 1.96118 1.15307 1.21555 0.98809 0.85157 1.04669 1.29306 0.94596 0.97160 0.79225 1.71908 1.15573 1.04134 1.30331 1.25534 1.00202 0.97217 0.87518 1.19471 0.93674 0.88587 0.99536 1.22271 0.94173 0.99751 1.02635 1.22584 0.96015 0.83973 0.98661 1.87936 1.23057 1.38989 1.80196 1.22566 0.82143 0.98530 0.98012 1.22259 0.99903 0.93642 1.02854 1.74488 1.15294 1.02800 1.17938 1.85265 1.52767 1.25526 1.35520 0.92686 0.80642 0.88314 0.88111 0.88216 0.90219 0.90072 0.92762 0.88363 0.92807 0.88504 0.90504 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.52 12.84 55.43 0.71 -23.81 16 2 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.58 -14.74 8.76 -34.44 -0.30 -15.04 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.24 5.65 2.81 -27.88 -0.08 5.57 16 10 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 11 O -0.56 -13.93 12.48 -35.23 -0.44 -14.37 16 12 C -0.06 -1.16 5.46 -27.89 -0.15 -1.32 16 13 C 0.22 4.13 7.54 -13.05 -0.10 4.03 16 14 N -0.49 -9.27 11.55 -9.87 -0.11 -9.38 16 15 C 0.17 2.91 6.74 -156.37 -1.05 1.86 16 16 C 0.01 0.10 2.74 -91.59 -0.25 -0.15 16 17 C -0.15 -1.84 5.41 -26.59 -0.14 -1.98 16 18 C 0.06 0.64 6.84 37.21 0.25 0.90 16 19 O -0.38 -4.34 10.77 -35.23 -0.38 -4.72 16 20 C 0.06 0.60 6.84 37.20 0.25 0.86 16 21 C -0.15 -1.66 5.41 -26.59 -0.14 -1.80 16 22 N -0.39 -7.28 12.16 30.90 0.38 -6.90 16 23 O 0.07 1.25 11.31 18.09 0.20 1.45 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.35 7.71 9.04 45.56 0.41 8.13 16 26 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -30.74 308.71 -6.02 -36.76 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.20 Total: 6.14 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.81 Total: -5.01 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.97 Total: -40.09 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.61 Total: -17.64 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.74 -6.02 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236552502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.768 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds