Wall clock time and date at job start Mon Mar 30 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47327 * 240.00155 * 3 2 1 5 5 H 1.48495 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46553 * 120.00399 * 3 2 1 7 7 C 1.37873 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00440 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99907 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46835 * 300.00225 * 9 7 2 11 11 O 1.42898 * 109.47013 * 60.00034 * 9 7 2 12 12 C 1.52997 * 109.47106 * 180.02562 * 9 7 2 13 13 C 1.50698 * 109.47061 * 174.99793 * 12 9 7 14 14 N 1.31135 * 126.54979 * 90.25254 * 13 12 9 15 15 C 1.34495 * 105.61295 * 180.12260 * 14 13 12 16 16 C 1.50706 * 126.28887 * 179.90269 * 15 14 13 17 17 C 1.53174 * 109.54626 * 239.53751 * 16 15 14 18 18 C 1.53101 * 109.15937 * 183.23946 * 17 16 15 19 19 O 1.42905 * 109.48696 * 57.47245 * 18 17 16 20 20 C 1.42907 * 114.09607 * 298.88977 * 19 18 17 21 21 C 1.53088 * 109.41297 * 61.16001 * 20 19 18 22 22 N 1.29946 * 107.42776 * 359.64154 * 15 14 13 23 23 O 1.21298 * 110.25077 * 0.22437 * 22 15 14 24 24 H 0.97001 * 119.99960 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99801 * 60.00746 * 11 9 7 26 26 H 1.08996 * 109.47062 * 54.99905 * 12 9 7 27 27 H 1.09000 * 109.46991 * 294.99542 * 12 9 7 28 28 H 1.09005 * 109.53598 * 359.71078 * 16 15 14 29 29 H 1.09009 * 109.51767 * 303.05657 * 17 16 15 30 30 H 1.09001 * 109.52257 * 63.23956 * 17 16 15 31 31 H 1.08998 * 109.40426 * 297.49340 * 18 17 16 32 32 H 1.08997 * 109.48251 * 177.49797 * 18 17 16 33 33 H 1.08997 * 109.47920 * 301.17522 * 20 19 18 34 34 H 1.09000 * 109.48176 * 181.13932 * 20 19 18 35 35 H 1.09007 * 109.52143 * 182.48293 * 21 20 19 36 36 H 1.08999 * 109.58098 * 62.33070 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 8 0.4290 -2.5745 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 6 1.4957 -4.9636 0.1233 14 7 1.0416 -5.7001 -0.8620 15 6 0.4445 -6.7553 -0.2799 16 6 -0.2394 -7.8961 -0.9884 17 6 -1.7063 -7.9643 -0.5529 18 6 -2.3714 -9.1739 -1.2151 19 8 -1.6601 -10.3619 -0.8615 20 6 -0.2959 -10.3735 -1.2868 21 6 0.4531 -9.2135 -0.6258 22 7 0.5705 -6.6134 1.0057 23 8 1.1714 -5.5905 1.2583 24 1 -0.4850 0.8401 0.0004 25 1 0.9208 -2.5291 -1.9983 26 1 2.9293 -3.5552 0.8412 27 1 2.8113 -3.6560 -0.9320 28 1 -0.1858 -7.7405 -2.0660 29 1 -1.7600 -8.0685 0.5309 30 1 -2.2196 -7.0523 -0.8579 31 1 -2.3546 -9.0488 -2.2977 32 1 -3.4036 -9.2532 -0.8740 33 1 -0.2520 -10.2641 -2.3704 34 1 0.1671 -11.3169 -0.9975 35 1 1.4828 -9.1941 -0.9829 36 1 0.4454 -9.3431 0.4564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236552502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:49 Heat of formation + Delta-G solvation = -69.566669 kcal Electronic energy + Delta-G solvation = -20421.358973 eV Core-core repulsion = 17100.379651 eV Total energy + Delta-G solvation = -3320.979322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.55341 -40.41239 -38.19648 -37.13876 -35.23852 -34.25016 -33.45831 -32.17059 -31.01084 -27.70801 -27.17787 -24.66292 -24.62462 -23.66373 -22.47995 -20.83660 -19.30358 -19.00339 -18.35702 -17.29028 -16.98685 -16.65803 -16.41402 -16.09175 -15.83760 -15.66839 -15.15208 -15.02173 -14.73189 -14.15126 -13.76075 -13.47431 -13.28640 -12.88756 -12.82823 -12.74136 -12.58272 -12.47105 -12.39638 -12.07007 -11.99569 -11.86477 -11.38870 -11.30883 -10.85607 -10.69789 -10.65414 -10.17872 -8.13697 -6.40377 0.14716 1.23406 1.47109 1.48222 1.56116 1.87654 2.41918 2.56761 2.92742 3.04561 3.14384 3.65813 3.66588 3.80050 3.91788 4.08949 4.21447 4.25864 4.36906 4.41841 4.47123 4.53185 4.62749 4.69769 4.76095 4.77239 4.93644 4.96818 4.98815 5.05649 5.18827 5.55310 5.69039 5.99231 6.19555 6.70911 7.15895 7.33473 7.51516 8.91287 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.046597 B = 0.003732 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.757017 B = 7500.090721 C = 7766.150423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.236 3.764 10 H 0.022 0.978 11 O -0.578 6.578 12 C -0.047 4.047 13 C 0.210 3.790 14 N -0.499 5.499 15 C 0.172 3.828 16 C 0.003 3.997 17 C -0.147 4.147 18 C 0.069 3.931 19 O -0.399 6.399 20 C 0.065 3.935 21 C -0.141 4.141 22 N -0.408 5.408 23 O 0.053 5.947 24 H 0.261 0.739 25 H 0.361 0.639 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 -16.845 -3.823 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.620 4.620 8 H 0.096 0.904 9 C 0.177 3.823 10 H 0.039 0.961 11 O -0.383 6.383 12 C -0.086 4.086 13 C -0.010 4.010 14 N -0.232 5.232 15 C -0.102 4.102 16 C -0.017 4.017 17 C -0.185 4.185 18 C -0.008 4.008 19 O -0.318 6.318 20 C -0.011 4.011 21 C -0.180 4.180 22 N -0.120 5.120 23 O 0.000 6.000 24 H 0.070 0.930 25 H 0.206 0.794 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.587 -17.614 -3.094 17.894 hybrid contribution 0.801 1.752 -0.102 1.929 sum 1.387 -15.863 -3.196 16.241 Atomic orbital electron populations 1.70229 1.07956 1.27573 1.48204 1.25935 0.95391 1.03179 0.93241 0.85535 0.78186 0.78044 0.79353 1.18858 1.21747 1.19024 1.21941 0.94172 0.91393 1.54484 0.90388 1.19204 0.87625 0.90047 0.85377 0.96062 1.86543 1.39233 1.96319 1.16157 1.21307 0.97583 0.82969 1.06719 1.29367 0.94747 0.97446 0.79420 1.71921 1.15939 1.04737 1.30620 1.26287 0.99128 0.97474 0.87272 1.19771 0.94011 0.88194 0.99729 1.22246 0.93809 1.00762 1.01717 1.22644 0.96240 0.82421 0.99487 1.87924 1.23965 1.39243 1.80632 1.22717 0.81086 0.98398 0.98919 1.22229 1.00517 0.93213 1.02024 1.74486 1.15930 1.02891 1.18735 1.85248 1.53138 1.25908 1.35722 0.93019 0.79384 0.86146 0.86121 0.87044 0.92056 0.90935 0.90901 0.87005 0.90885 0.86588 0.89699 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.63 12.84 21.45 0.28 -52.36 16 2 C 0.03 1.34 5.40 84.65 0.46 1.79 16 3 Si 0.96 41.11 29.54 68.60 2.03 43.13 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.58 -29.34 8.76 25.60 0.22 -29.12 16 8 H 0.08 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.24 11.32 2.81 29.85 0.08 11.41 16 10 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 11 O -0.58 -29.12 12.48 -148.98 -1.86 -30.98 16 12 C -0.05 -1.69 5.46 29.85 0.16 -1.53 16 13 C 0.21 7.95 7.54 88.38 0.67 8.62 16 14 N -0.50 -18.73 11.55 -303.19 -3.50 -22.23 16 15 C 0.17 5.88 6.74 138.46 0.93 6.81 16 16 C 0.00 0.08 2.74 -11.42 -0.03 0.04 16 17 C -0.15 -3.51 5.41 30.69 0.17 -3.34 16 18 C 0.07 1.24 6.84 72.02 0.49 1.73 16 19 O -0.40 -8.16 10.77 -148.98 -1.60 -9.77 16 20 C 0.07 1.05 6.84 72.01 0.49 1.54 16 21 C -0.14 -2.94 5.41 30.68 0.17 -2.78 16 22 N -0.41 -15.15 12.16 -60.31 -0.73 -15.88 16 23 O 0.05 2.04 11.31 74.78 0.85 2.89 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.36 15.89 9.04 -74.06 -0.67 15.22 16 26 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 27 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -66.14 308.71 -0.31 -66.45 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.43 Total: 23.57 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 3.81 Total: -4.82 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -3.96 Total: -90.47 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -2.62 Total: -37.86 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -66.14 -0.31 -66.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236552502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.116 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds