Wall clock time and date at job start Mon Mar 30 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47246 * 270.00601 * 3 2 1 5 5 H 1.48502 * 109.46791 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.47061 * 150.00175 * 3 2 1 7 7 C 1.37884 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99972 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.47395 * 299.99973 * 9 7 2 11 11 O 1.42904 * 109.47071 * 60.00077 * 9 7 2 12 12 C 1.53001 * 109.47337 * 179.97438 * 9 7 2 13 13 C 1.50698 * 109.47431 * 175.00004 * 12 9 7 14 14 N 1.31130 * 126.54646 * 90.00204 * 13 12 9 15 15 C 1.34492 * 105.61399 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.29104 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47116 * 270.02946 * 16 15 14 18 18 H 1.09001 * 110.80165 * 305.69646 * 17 16 15 19 19 C 1.54811 * 110.90583 * 182.07349 * 17 16 15 20 20 C 1.54105 * 104.18463 * 220.91781 * 19 17 16 21 21 O 1.43738 * 107.29185 * 357.97099 * 20 19 17 22 22 C 1.44418 * 107.00560 * 26.48716 * 21 20 19 23 23 N 1.29954 * 107.42242 * 359.97438 * 15 14 13 24 24 O 1.21293 * 110.25286 * 0.02562 * 23 15 14 25 25 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99943 * 59.99955 * 11 9 7 27 27 H 1.09000 * 109.46731 * 55.00283 * 12 9 7 28 28 H 1.08997 * 109.47295 * 295.00659 * 12 9 7 29 29 H 1.09003 * 109.46608 * 30.02814 * 16 15 14 30 30 H 1.08999 * 109.47381 * 150.02179 * 16 15 14 31 31 H 1.09004 * 110.48891 * 339.59254 * 19 17 16 32 32 H 1.09002 * 110.49110 * 102.24478 * 19 17 16 33 33 H 1.08999 * 109.87353 * 117.39254 * 20 19 17 34 34 H 1.08996 * 109.87804 * 238.39587 * 20 19 17 35 35 H 1.09004 * 110.65645 * 201.48374 * 22 21 20 36 36 H 1.09000 * 110.60079 * 78.47246 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8745 -0.6801 -0.8911 11 8 3.9882 -0.5207 1.1657 12 6 4.0215 -2.6366 -0.0010 13 6 5.5234 -2.6384 -0.1254 14 7 6.3885 -2.6085 0.8596 15 6 7.6007 -2.6247 0.2772 16 6 8.9308 -2.6032 0.9853 17 6 9.3796 -1.1540 1.1836 18 1 9.3873 -0.6178 0.2346 19 6 10.7694 -1.0941 1.8631 20 6 10.6455 0.0616 2.8750 21 8 9.3285 0.6185 2.7283 22 6 8.4796 -0.4329 2.2191 23 7 7.4143 -2.6634 -1.0083 24 8 6.2279 -2.6717 -1.2605 25 1 -0.4850 0.8400 0.0004 26 1 3.7032 -0.9244 1.9969 27 1 3.5866 -3.1757 -0.8426 28 1 3.7335 -3.1237 0.9305 29 1 8.8335 -3.0895 1.9560 30 1 9.6703 -3.1338 0.3857 31 1 10.9830 -2.0308 2.3780 32 1 11.5443 -0.8762 1.1282 33 1 10.7768 -0.3176 3.8884 34 1 11.3975 0.8216 2.6634 35 1 7.5972 -0.0141 1.7350 36 1 8.1923 -1.1152 3.0191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236552674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:02 Heat of formation + Delta-G solvation = -36.491894 kcal Electronic energy + Delta-G solvation = -20640.795014 eV Core-core repulsion = 17321.249922 eV Total energy + Delta-G solvation = -3319.545092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.24648 -39.58191 -36.73547 -35.95339 -33.91886 -32.48506 -32.35114 -30.09369 -29.54821 -27.08656 -26.15906 -23.38664 -22.95853 -21.77621 -20.95313 -20.20301 -17.83553 -17.64822 -17.07049 -16.49026 -15.84919 -15.29461 -14.96336 -14.73050 -14.46940 -14.35112 -14.10446 -13.50640 -13.07087 -12.87845 -12.62704 -12.43686 -11.94612 -11.77268 -11.62946 -11.34477 -11.26101 -11.06246 -10.91578 -10.83682 -10.68190 -10.48721 -10.29893 -9.77939 -9.56908 -9.17549 -8.72354 -8.42077 -6.22455 -4.36428 1.47591 2.50456 3.20748 3.35262 3.45849 3.71087 3.71193 3.88889 4.16563 4.43177 4.46456 4.53881 4.72601 4.87452 5.05039 5.09445 5.11082 5.33760 5.37781 5.48752 5.50561 5.56840 5.67167 5.72531 5.78850 5.89954 5.91836 5.98139 6.05761 6.28075 6.38868 6.75594 7.08431 7.39464 8.16219 8.47211 8.69970 8.90459 9.40465 10.87349 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.005299 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.303767 B = 5282.416198 C = 6196.800839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.089 3.911 3 Si 0.867 3.133 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.217 1.217 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.202 3.798 10 H 0.060 0.940 11 O -0.575 6.575 12 C -0.052 4.052 13 C 0.213 3.787 14 N -0.482 5.482 15 C 0.162 3.838 16 C -0.013 4.013 17 C -0.118 4.118 18 H 0.088 0.912 19 C -0.149 4.149 20 C 0.046 3.954 21 O -0.379 6.379 22 C 0.056 3.944 23 N -0.397 5.397 24 O 0.067 5.933 25 H 0.267 0.733 26 H 0.361 0.639 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.798 -5.065 3.539 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.116 4.116 3 Si 0.693 3.307 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.139 1.139 7 C -0.606 4.606 8 H 0.096 0.904 9 C 0.143 3.857 10 H 0.078 0.922 11 O -0.381 6.381 12 C -0.091 4.091 13 C -0.006 4.006 14 N -0.215 5.215 15 C -0.111 4.111 16 C -0.052 4.052 17 C -0.138 4.138 18 H 0.106 0.894 19 C -0.187 4.187 20 C -0.031 4.031 21 O -0.297 6.297 22 C -0.020 4.020 23 N -0.108 5.108 24 O 0.011 5.989 25 H 0.077 0.923 26 H 0.208 0.792 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.648 -4.385 2.995 20.352 hybrid contribution -0.178 0.207 0.100 0.290 sum 19.470 -4.178 3.095 20.152 Atomic orbital electron populations 1.69927 1.06742 1.27732 1.47898 1.24930 0.94595 0.99883 0.92214 0.87076 0.83142 0.81919 0.78551 1.21273 1.22007 1.13929 1.21350 0.88808 0.95225 1.55204 0.90381 1.19767 0.94338 0.85012 0.86560 0.92242 1.86716 1.77806 1.57246 1.16366 1.21302 0.78391 1.03962 1.05467 1.29330 0.99694 0.92358 0.79260 1.71907 0.98145 1.21270 1.30224 1.25669 0.96584 1.01328 0.87514 1.19839 0.88076 0.97001 1.00308 1.22731 0.95089 0.95355 1.00616 0.89395 1.22984 0.97119 0.99723 0.98879 1.23126 0.86128 0.95609 0.98237 1.88907 1.19371 1.35075 1.86390 1.23658 0.93809 0.89476 0.95060 1.74551 0.95854 1.22332 1.18013 1.85267 1.12098 1.66089 1.35495 0.92327 0.79223 0.87806 0.87500 0.88537 0.88983 0.90217 0.90247 0.92401 0.90036 0.88461 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.17 16 2 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 3 Si 0.87 21.20 26.99 -169.99 -4.59 16.62 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.22 -5.24 5.31 56.52 0.30 -4.94 16 7 C -0.57 -14.57 9.34 -34.44 -0.32 -14.90 16 8 H 0.08 2.11 7.99 -52.49 -0.42 1.70 16 9 C 0.20 4.33 2.30 -27.89 -0.06 4.26 16 10 H 0.06 1.34 7.57 -51.93 -0.39 0.95 16 11 O -0.58 -12.33 9.90 -35.23 -0.35 -12.68 16 12 C -0.05 -0.89 5.46 -27.88 -0.15 -1.04 16 13 C 0.21 3.67 7.54 -13.06 -0.10 3.57 16 14 N -0.48 -8.13 11.55 -9.87 -0.11 -8.24 16 15 C 0.16 2.49 7.12 -156.37 -1.11 1.38 16 16 C -0.01 -0.15 5.24 -27.88 -0.15 -0.29 16 17 C -0.12 -1.33 3.11 -88.61 -0.28 -1.60 16 18 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.15 -1.25 6.60 -25.20 -0.17 -1.41 16 20 C 0.05 0.45 7.70 37.73 0.29 0.74 16 21 O -0.38 -5.31 11.52 -35.23 -0.41 -5.72 16 22 C 0.06 0.76 6.83 38.21 0.26 1.02 16 23 N -0.40 -6.70 12.16 30.90 0.38 -6.32 16 24 O 0.07 1.17 11.31 18.11 0.20 1.37 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 26 H 0.36 6.83 9.04 45.56 0.41 7.24 16 27 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.10 0.94 8.05 -51.93 -0.42 0.53 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -31.01 305.53 -5.64 -36.65 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.26 Total: 4.81 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.88 Total: -5.92 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.04 Total: -39.74 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.55 Total: -17.02 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.59 Total: 16.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.01 -5.64 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236552674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.157 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds