Wall clock time and date at job start Mon Mar 30 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47246 * 270.00601 * 3 2 1 5 5 H 1.48502 * 109.46791 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.47061 * 150.00175 * 3 2 1 7 7 C 1.37884 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99972 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.47395 * 299.99973 * 9 7 2 11 11 O 1.42904 * 109.47071 * 60.00077 * 9 7 2 12 12 C 1.53001 * 109.47337 * 179.97438 * 9 7 2 13 13 C 1.50698 * 109.47431 * 175.00004 * 12 9 7 14 14 N 1.31130 * 126.54646 * 90.00204 * 13 12 9 15 15 C 1.34492 * 105.61399 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.29104 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47116 * 270.02946 * 16 15 14 18 18 H 1.09001 * 110.80165 * 305.69646 * 17 16 15 19 19 C 1.54811 * 110.90583 * 182.07349 * 17 16 15 20 20 C 1.54105 * 104.18463 * 220.91781 * 19 17 16 21 21 O 1.43738 * 107.29185 * 357.97099 * 20 19 17 22 22 C 1.44418 * 107.00560 * 26.48716 * 21 20 19 23 23 N 1.29954 * 107.42242 * 359.97438 * 15 14 13 24 24 O 1.21293 * 110.25286 * 0.02562 * 23 15 14 25 25 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99943 * 59.99955 * 11 9 7 27 27 H 1.09000 * 109.46731 * 55.00283 * 12 9 7 28 28 H 1.08997 * 109.47295 * 295.00659 * 12 9 7 29 29 H 1.09003 * 109.46608 * 30.02814 * 16 15 14 30 30 H 1.08999 * 109.47381 * 150.02179 * 16 15 14 31 31 H 1.09004 * 110.48891 * 339.59254 * 19 17 16 32 32 H 1.09002 * 110.49110 * 102.24478 * 19 17 16 33 33 H 1.08999 * 109.87353 * 117.39254 * 20 19 17 34 34 H 1.08996 * 109.87804 * 238.39587 * 20 19 17 35 35 H 1.09004 * 110.65645 * 201.48374 * 22 21 20 36 36 H 1.09000 * 110.60079 * 78.47246 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 1 3.8745 -0.6801 -0.8911 11 8 3.9882 -0.5207 1.1657 12 6 4.0215 -2.6366 -0.0010 13 6 5.5234 -2.6384 -0.1254 14 7 6.3885 -2.6085 0.8596 15 6 7.6007 -2.6247 0.2772 16 6 8.9308 -2.6032 0.9853 17 6 9.3796 -1.1540 1.1836 18 1 9.3873 -0.6178 0.2346 19 6 10.7694 -1.0941 1.8631 20 6 10.6455 0.0616 2.8750 21 8 9.3285 0.6185 2.7283 22 6 8.4796 -0.4329 2.2191 23 7 7.4143 -2.6634 -1.0083 24 8 6.2279 -2.6717 -1.2605 25 1 -0.4850 0.8400 0.0004 26 1 3.7032 -0.9244 1.9969 27 1 3.5866 -3.1757 -0.8426 28 1 3.7335 -3.1237 0.9305 29 1 8.8335 -3.0895 1.9560 30 1 9.6703 -3.1338 0.3857 31 1 10.9830 -2.0308 2.3780 32 1 11.5443 -0.8762 1.1282 33 1 10.7768 -0.3176 3.8884 34 1 11.3975 0.8216 2.6634 35 1 7.5972 -0.0141 1.7350 36 1 8.1923 -1.1152 3.0191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236552674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:01 Heat of formation + Delta-G solvation = -61.142657 kcal Electronic energy + Delta-G solvation = -20641.863951 eV Core-core repulsion = 17321.249922 eV Total energy + Delta-G solvation = -3320.614030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.52505 -40.47587 -38.43132 -37.15301 -35.09842 -34.41844 -33.69897 -31.33773 -30.67255 -28.14133 -27.92925 -24.64999 -24.03180 -23.13861 -22.15931 -21.32311 -19.55219 -19.03229 -18.37017 -17.49765 -16.87518 -16.76249 -16.48632 -16.20186 -16.08184 -15.52370 -15.07595 -14.85878 -14.67009 -14.00894 -13.90255 -13.59880 -13.50699 -13.03215 -12.90308 -12.73013 -12.48892 -12.46390 -12.27488 -12.06442 -11.98953 -11.83872 -11.59078 -11.18029 -10.93546 -10.79147 -10.68070 -10.19449 -8.35253 -6.49411 0.16373 1.25911 1.38239 1.45892 1.73947 1.88056 2.42314 2.65546 2.97046 3.03358 3.06036 3.55086 3.67749 3.87544 3.90697 4.05950 4.18503 4.24935 4.25558 4.38576 4.42141 4.52245 4.61291 4.77500 4.82959 4.85925 4.88968 4.97174 5.03961 5.05616 5.18534 5.36985 5.43475 5.88748 6.08147 6.63967 7.16838 7.19356 7.33620 8.77986 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.005299 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.303767 B = 5282.416198 C = 6196.800839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.040 3.960 3 Si 0.924 3.076 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.212 1.212 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.208 3.792 10 H 0.050 0.950 11 O -0.582 6.582 12 C -0.040 4.040 13 C 0.208 3.792 14 N -0.489 5.489 15 C 0.167 3.833 16 C -0.011 4.011 17 C -0.113 4.113 18 H 0.070 0.930 19 C -0.137 4.137 20 C 0.036 3.964 21 O -0.410 6.410 22 C 0.057 3.943 23 N -0.411 5.411 24 O 0.054 5.946 25 H 0.267 0.733 26 H 0.373 0.627 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.550 -5.839 4.216 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.161 4.161 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.134 1.134 7 C -0.596 4.596 8 H 0.076 0.924 9 C 0.148 3.852 10 H 0.068 0.932 11 O -0.389 6.389 12 C -0.079 4.079 13 C -0.012 4.012 14 N -0.223 5.223 15 C -0.107 4.107 16 C -0.050 4.050 17 C -0.133 4.133 18 H 0.089 0.911 19 C -0.174 4.174 20 C -0.040 4.040 21 O -0.330 6.330 22 C -0.020 4.020 23 N -0.124 5.124 24 O 0.001 5.999 25 H 0.076 0.924 26 H 0.222 0.778 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.405 -5.171 3.667 23.285 hybrid contribution -0.983 0.414 -0.068 1.069 sum 21.422 -4.757 3.599 22.237 Atomic orbital electron populations 1.70032 1.08174 1.28341 1.50562 1.25629 0.95049 1.02847 0.92590 0.86209 0.82002 0.78722 0.78152 1.21509 1.22495 1.13397 1.21677 0.91099 0.94013 1.52846 0.92426 1.19531 0.91690 0.87642 0.86296 0.93209 1.86657 1.77563 1.57789 1.16912 1.21046 0.78673 1.01195 1.07002 1.29216 0.99634 0.92832 0.79534 1.71926 0.98819 1.21237 1.30356 1.26439 0.97639 0.99387 0.87192 1.20108 0.86372 0.97245 1.01275 1.22640 0.96498 0.94821 0.99349 0.91140 1.22974 0.95378 1.00371 0.98723 1.23417 0.84371 0.96609 0.99632 1.88868 1.21358 1.36134 1.86603 1.23553 0.93280 0.89456 0.95702 1.74551 0.95559 1.23417 1.18901 1.85250 1.12468 1.66498 1.35658 0.92375 0.77848 0.86371 0.86065 0.86588 0.86529 0.87638 0.88617 0.90919 0.88842 0.92045 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.04 2.19 5.47 84.66 0.46 2.65 16 3 Si 0.92 44.22 26.99 68.60 1.85 46.07 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.21 -9.87 5.31 99.48 0.53 -9.34 16 7 C -0.56 -28.61 9.34 25.60 0.24 -28.37 16 8 H 0.06 3.14 7.99 -2.91 -0.02 3.12 16 9 C 0.21 8.71 2.30 29.85 0.07 8.78 16 10 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 11 O -0.58 -24.24 9.90 -148.98 -1.47 -25.71 16 12 C -0.04 -1.32 5.46 29.85 0.16 -1.16 16 13 C 0.21 6.88 7.54 88.38 0.67 7.55 16 14 N -0.49 -15.72 11.55 -303.19 -3.50 -19.22 16 15 C 0.17 4.80 7.12 138.46 0.99 5.79 16 16 C -0.01 -0.22 5.24 29.85 0.16 -0.06 16 17 C -0.11 -2.28 3.11 -9.49 -0.03 -2.31 16 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 19 C -0.14 -1.78 6.60 31.59 0.21 -1.57 16 20 C 0.04 0.60 7.70 72.36 0.56 1.16 16 21 O -0.41 -11.07 11.52 -148.98 -1.72 -12.79 16 22 C 0.06 1.47 6.83 72.66 0.50 1.97 16 23 N -0.41 -13.30 12.16 -60.32 -0.73 -14.04 16 24 O 0.05 1.84 11.31 74.85 0.85 2.69 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.37 13.60 9.04 -74.06 -0.67 12.93 16 27 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 28 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.12 1.81 8.05 -2.39 -0.02 1.79 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.11 0.87 7.86 -2.39 -0.02 0.85 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 1.79 7.98 -2.39 -0.02 1.77 16 Total: -1.00 -66.94 305.53 -0.21 -67.15 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.25 Total: 16.58 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 3.97 Total: -5.58 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.94 Total: -88.39 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -2.34 Total: -35.81 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.85 Total: 46.07 kcal Total: -66.94 -0.21 -67.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236552674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.005 kcal (2) G-P(sol) polarization free energy of solvation -66.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds