Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29754 * 119.99564 * 2 1 4 4 N 1.40094 * 120.00456 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00360 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46598 * 329.99736 * 5 4 3 7 7 C 1.53004 * 109.47064 * 89.99686 * 5 4 3 8 8 C 1.50703 * 109.47039 * 209.99964 * 5 4 3 9 9 H 1.08000 * 120.00161 * 354.36203 * 8 5 4 10 10 C 1.37881 * 119.99525 * 174.36438 * 8 5 4 11 11 N 1.31513 * 119.99659 * 156.61593 * 10 8 5 12 12 Si 1.86802 * 120.00164 * 336.88542 * 10 8 5 13 13 H 1.48497 * 109.46648 * 179.72694 * 12 10 8 14 14 H 1.48498 * 109.47155 * 299.73023 * 12 10 8 15 15 H 1.48505 * 109.46685 * 59.72885 * 12 10 8 16 16 C 1.47436 * 120.00374 * 180.02562 * 2 1 3 17 17 C 1.39038 * 123.13847 * 89.72408 * 16 2 1 18 18 C 1.50702 * 121.50439 * 0.04402 * 17 16 2 19 19 N 1.29680 * 116.98322 * 179.81132 * 17 16 2 20 20 S 1.69473 * 107.91982 * 0.43391 * 19 17 16 21 21 C 1.38531 * 123.13393 * 270.02441 * 16 2 1 22 22 N 1.38746 * 127.34042 * 359.97438 * 21 16 2 23 23 H 1.09001 * 109.47054 * 89.99805 * 1 2 3 24 24 H 1.08998 * 109.46828 * 209.99420 * 1 2 3 25 25 H 1.09004 * 109.47380 * 329.99639 * 1 2 3 26 26 H 0.97007 * 119.99707 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.46762 * 173.13348 * 7 5 4 28 28 H 1.08997 * 109.46949 * 293.13049 * 7 5 4 29 29 H 1.08996 * 109.47111 * 53.13511 * 7 5 4 30 30 H 0.96997 * 120.00046 * 355.20255 * 11 10 8 31 31 H 1.09009 * 109.46616 * 89.99814 * 18 17 16 32 32 H 1.08999 * 109.46519 * 209.99249 * 18 17 16 33 33 H 1.08995 * 109.47068 * 329.99929 * 18 17 16 34 34 H 0.97001 * 119.99904 * 0.02562 * 22 21 16 35 35 H 0.97000 * 120.00177 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1238 0.0000 4 7 1.4552 2.3370 0.0005 5 6 2.1876 3.6057 0.0011 6 1 3.1400 3.4751 0.5149 7 6 2.4426 4.0480 -1.4412 8 6 1.3731 4.6556 0.7120 9 1 0.3700 4.4291 1.0420 10 6 1.9085 5.9054 0.9410 11 7 1.1143 6.9378 1.1224 12 14 3.7620 6.1336 0.9860 13 1 4.0788 7.5619 1.2404 14 1 4.3374 5.2981 2.0705 15 1 4.3431 5.7221 -0.3172 16 6 2.2442 -1.2768 -0.0006 17 6 2.6195 -1.9373 -1.1651 18 6 2.2919 -1.3806 -2.5267 19 7 3.2681 -3.0517 -1.0266 20 16 3.4406 -3.3518 0.6324 21 6 2.6224 -1.9333 1.1592 22 7 2.3905 -1.5323 2.4670 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5139 26 1 0.4851 2.3370 0.0005 27 1 2.8777 5.0475 -1.4432 28 1 3.1314 3.3510 -1.9186 29 1 1.5006 4.0608 -1.9893 30 1 0.1546 6.8343 1.0264 31 1 3.1033 -0.7330 -2.8591 32 1 2.1682 -2.2004 -3.2342 33 1 1.3676 -0.8056 -2.4713 34 1 1.9135 -0.7064 2.6437 35 1 2.7053 -2.0779 3.2047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309388798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = 68.912433 kcal Electronic energy + Delta-G solvation = -18069.945496 eV Core-core repulsion = 15230.016700 eV Total energy + Delta-G solvation = -2839.928796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24386 -36.76353 -35.22806 -34.25486 -31.92979 -29.79256 -29.43710 -28.25111 -26.85369 -24.73843 -22.97376 -20.77819 -19.81065 -18.83052 -18.59305 -17.62755 -16.43396 -15.79625 -15.37379 -14.85629 -14.44597 -14.01644 -13.56896 -13.27286 -12.88531 -12.78760 -12.64975 -12.43237 -12.27735 -11.83929 -11.81554 -11.40888 -11.26831 -11.17676 -10.58200 -10.51930 -10.30077 -10.05933 -9.88576 -9.52310 -9.10267 -8.38354 -8.31644 -7.86842 -7.10633 -6.58404 -4.21671 1.06845 1.26285 1.99460 2.56153 2.73016 3.35883 3.40626 3.56423 3.61539 3.89178 4.41003 4.91660 5.09339 5.13346 5.43233 5.50662 5.53268 5.65315 5.74415 5.80328 5.90486 6.16307 6.34050 6.38307 6.59890 6.69432 6.76284 6.92161 6.99734 7.11577 7.32956 7.37956 7.89622 8.04662 8.26176 8.79415 9.26182 9.44217 10.76556 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.004606 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.456314 B = 6077.609425 C = 6232.074349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.058 3.942 3 N -0.197 5.197 4 N -0.626 5.626 5 C 0.279 3.721 6 H 0.031 0.969 7 C -0.158 4.158 8 C -0.621 4.621 9 H 0.059 0.941 10 C 0.045 3.955 11 N -0.891 5.891 12 Si 1.035 2.965 13 H -0.283 1.283 14 H -0.282 1.282 15 H -0.274 1.274 16 C -0.203 4.203 17 C 0.184 3.816 18 C -0.082 4.082 19 N -0.495 5.495 20 S 0.208 5.792 21 C 0.142 3.858 22 N -0.813 5.813 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.372 0.628 27 H 0.056 0.944 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -18.028 -0.714 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 N -0.008 5.008 4 N -0.364 5.364 5 C 0.175 3.825 6 H 0.049 0.951 7 C -0.217 4.217 8 C -0.660 4.660 9 H 0.078 0.922 10 C -0.162 4.162 11 N -0.524 5.524 12 Si 0.863 3.137 13 H -0.209 1.209 14 H -0.208 1.208 15 H -0.200 1.200 16 C -0.227 4.227 17 C 0.007 3.993 18 C -0.143 4.143 19 N -0.318 5.318 20 S 0.354 5.646 21 C -0.096 4.096 22 N -0.355 5.355 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.211 0.789 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.243 0.757 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.453 -18.193 -0.564 18.739 hybrid contribution -3.477 0.479 0.164 3.513 sum 0.977 -17.714 -0.400 17.745 Atomic orbital electron populations 1.20991 0.93561 1.02192 1.02107 1.21361 0.91669 0.89346 1.11254 1.74255 1.28261 0.92911 1.05401 1.48702 1.06077 0.99837 1.81764 1.18717 0.93060 0.78551 0.92206 0.95142 1.22538 0.99531 0.99999 0.99623 1.22036 1.02633 0.97795 1.43510 0.92246 1.25634 1.06452 0.91287 0.92863 1.70863 1.06157 1.30653 1.44680 0.84162 0.75622 0.76323 0.77638 1.20856 1.20810 1.19996 1.17673 1.15976 0.99636 0.89375 1.21005 0.91667 0.89681 0.96940 1.20530 1.02958 1.00782 0.90074 1.76575 1.28438 1.21072 1.05737 1.83924 1.56818 1.21058 1.02831 1.23184 0.97515 0.99254 0.89610 1.41446 1.63767 1.28594 1.01668 0.91582 0.91774 0.91979 0.78945 0.92513 0.95506 0.93933 0.91964 0.89874 0.90671 0.90188 0.75663 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.52 36.00 0.34 -1.40 16 2 C 0.06 0.92 5.24 -79.73 -0.42 0.50 16 3 N -0.20 -3.78 11.48 35.10 0.40 -3.37 16 4 N -0.63 -13.13 5.95 -5.88 -0.03 -13.16 16 5 C 0.28 6.65 2.83 -69.08 -0.20 6.46 16 6 H 0.03 0.77 6.72 -51.93 -0.35 0.42 16 7 C -0.16 -3.52 9.24 37.16 0.34 -3.18 16 8 C -0.62 -16.78 8.96 -34.44 -0.31 -17.09 16 9 H 0.06 1.71 8.01 -52.49 -0.42 1.29 16 10 C 0.05 1.25 5.19 -17.82 -0.09 1.16 16 11 N -0.89 -26.25 13.70 55.43 0.76 -25.49 16 12 Si 1.04 24.51 26.44 -169.99 -4.50 20.01 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -6.07 6.14 56.52 0.35 -5.73 16 16 C -0.20 -2.99 5.53 -105.75 -0.59 -3.57 16 17 C 0.18 2.65 6.74 -83.20 -0.56 2.09 16 18 C -0.08 -1.01 9.96 36.01 0.36 -0.65 16 19 N -0.50 -7.25 11.97 32.60 0.39 -6.86 16 20 S 0.21 2.53 23.69 -107.50 -2.55 -0.01 16 21 C 0.14 1.82 7.77 -14.31 -0.11 1.71 16 22 N -0.81 -8.22 9.08 31.61 0.29 -7.94 16 23 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 24 H 0.06 0.77 8.11 -51.93 -0.42 0.34 16 25 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 26 H 0.37 7.45 6.34 -182.60 -1.16 6.29 16 27 H 0.06 1.30 5.47 -51.93 -0.28 1.01 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 31 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.96 7.36 -51.93 -0.38 0.57 16 34 H 0.41 4.42 8.56 -40.82 -0.35 4.07 16 35 H 0.41 2.87 8.95 -40.82 -0.37 2.50 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -30.43 308.94 -7.19 -37.62 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.38 Total: 8.53 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.23 Total: -13.97 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 1.80 Total: -56.83 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.50 Total: 20.01 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.55 Total: -0.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.43 -7.19 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.530 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds