Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29754 * 119.99564 * 2 1 4 4 N 1.40094 * 120.00456 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00360 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46598 * 329.99736 * 5 4 3 7 7 C 1.53004 * 109.47064 * 89.99686 * 5 4 3 8 8 C 1.50703 * 109.47039 * 209.99964 * 5 4 3 9 9 H 1.08000 * 120.00161 * 354.36203 * 8 5 4 10 10 C 1.37881 * 119.99525 * 174.36438 * 8 5 4 11 11 N 1.31513 * 119.99659 * 156.61593 * 10 8 5 12 12 Si 1.86802 * 120.00164 * 336.88542 * 10 8 5 13 13 H 1.48497 * 109.46648 * 179.72694 * 12 10 8 14 14 H 1.48498 * 109.47155 * 299.73023 * 12 10 8 15 15 H 1.48505 * 109.46685 * 59.72885 * 12 10 8 16 16 C 1.47436 * 120.00374 * 180.02562 * 2 1 3 17 17 C 1.39038 * 123.13847 * 89.72408 * 16 2 1 18 18 C 1.50702 * 121.50439 * 0.04402 * 17 16 2 19 19 N 1.29680 * 116.98322 * 179.81132 * 17 16 2 20 20 S 1.69473 * 107.91982 * 0.43391 * 19 17 16 21 21 C 1.38531 * 123.13393 * 270.02441 * 16 2 1 22 22 N 1.38746 * 127.34042 * 359.97438 * 21 16 2 23 23 H 1.09001 * 109.47054 * 89.99805 * 1 2 3 24 24 H 1.08998 * 109.46828 * 209.99420 * 1 2 3 25 25 H 1.09004 * 109.47380 * 329.99639 * 1 2 3 26 26 H 0.97007 * 119.99707 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.46762 * 173.13348 * 7 5 4 28 28 H 1.08997 * 109.46949 * 293.13049 * 7 5 4 29 29 H 1.08996 * 109.47111 * 53.13511 * 7 5 4 30 30 H 0.96997 * 120.00046 * 355.20255 * 11 10 8 31 31 H 1.09009 * 109.46616 * 89.99814 * 18 17 16 32 32 H 1.08999 * 109.46519 * 209.99249 * 18 17 16 33 33 H 1.08995 * 109.47068 * 329.99929 * 18 17 16 34 34 H 0.97001 * 119.99904 * 0.02562 * 22 21 16 35 35 H 0.97000 * 120.00177 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1238 0.0000 4 7 1.4552 2.3370 0.0005 5 6 2.1876 3.6057 0.0011 6 1 3.1400 3.4751 0.5149 7 6 2.4426 4.0480 -1.4412 8 6 1.3731 4.6556 0.7120 9 1 0.3700 4.4291 1.0420 10 6 1.9085 5.9054 0.9410 11 7 1.1143 6.9378 1.1224 12 14 3.7620 6.1336 0.9860 13 1 4.0788 7.5619 1.2404 14 1 4.3374 5.2981 2.0705 15 1 4.3431 5.7221 -0.3172 16 6 2.2442 -1.2768 -0.0006 17 6 2.6195 -1.9373 -1.1651 18 6 2.2919 -1.3806 -2.5267 19 7 3.2681 -3.0517 -1.0266 20 16 3.4406 -3.3518 0.6324 21 6 2.6224 -1.9333 1.1592 22 7 2.3905 -1.5323 2.4670 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5139 26 1 0.4851 2.3370 0.0005 27 1 2.8777 5.0475 -1.4432 28 1 3.1314 3.3510 -1.9186 29 1 1.5006 4.0608 -1.9893 30 1 0.1546 6.8343 1.0264 31 1 3.1033 -0.7330 -2.8591 32 1 2.1682 -2.2004 -3.2342 33 1 1.3676 -0.8056 -2.4713 34 1 1.9135 -0.7064 2.6437 35 1 2.7053 -2.0779 3.2047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309388798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = 46.736802 kcal Electronic energy + Delta-G solvation = -18070.907103 eV Core-core repulsion = 15230.016700 eV Total energy + Delta-G solvation = -2840.890403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33492 -38.22179 -36.32641 -35.89436 -33.80700 -31.21503 -30.40787 -29.37816 -28.31201 -26.74292 -24.10704 -22.27872 -21.28908 -20.20875 -19.69964 -19.28773 -17.74586 -16.81975 -16.63454 -16.34305 -15.57458 -15.46033 -15.03936 -14.78554 -14.52782 -14.14603 -14.04666 -13.69409 -13.55928 -13.24082 -13.17018 -12.94970 -12.40626 -12.33666 -12.24583 -12.04064 -11.84060 -11.67166 -11.35975 -11.14131 -10.87478 -10.43511 -9.38124 -8.91997 -8.86482 -8.51747 -6.40447 0.03641 0.25233 0.96515 1.41777 1.46845 1.48502 1.51961 1.72524 2.37175 2.45941 2.73859 2.97243 3.84840 4.00014 4.34341 4.45192 4.49418 4.50885 4.61056 4.70802 4.73717 4.78660 4.84237 4.88167 5.07744 5.17301 5.30567 5.47520 5.59827 5.90870 5.97582 5.98396 6.03826 6.28247 6.53535 6.74036 7.33409 7.80750 8.56862 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.004606 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.456314 B = 6077.609425 C = 6232.074349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.101 3.899 3 N -0.237 5.237 4 N -0.642 5.642 5 C 0.285 3.715 6 H 0.022 0.978 7 C -0.150 4.150 8 C -0.620 4.620 9 H 0.029 0.971 10 C 0.001 3.999 11 N -0.923 5.923 12 Si 1.072 2.928 13 H -0.284 1.284 14 H -0.271 1.271 15 H -0.248 1.248 16 C -0.239 4.239 17 C 0.179 3.821 18 C -0.082 4.082 19 N -0.524 5.524 20 S 0.250 5.750 21 C 0.147 3.853 22 N -0.798 5.798 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.372 0.628 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.411 0.589 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -20.130 -0.731 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 N -0.046 5.046 4 N -0.379 5.379 5 C 0.180 3.820 6 H 0.039 0.961 7 C -0.209 4.209 8 C -0.658 4.658 9 H 0.047 0.953 10 C -0.201 4.201 11 N -0.557 5.557 12 Si 0.894 3.106 13 H -0.210 1.210 14 H -0.196 1.196 15 H -0.173 1.173 16 C -0.263 4.263 17 C 0.003 3.997 18 C -0.143 4.143 19 N -0.347 5.347 20 S 0.395 5.605 21 C -0.093 4.093 22 N -0.340 5.340 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.211 0.789 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.242 0.758 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.484 -20.322 -0.563 21.057 hybrid contribution -3.877 0.862 0.265 3.981 sum 1.607 -19.460 -0.298 19.529 Atomic orbital electron populations 1.21068 0.92088 1.02690 1.03210 1.21820 0.92877 0.88940 1.05824 1.74297 1.28489 0.92894 1.08957 1.48266 1.05689 0.99889 1.84098 1.18387 0.92035 0.79231 0.92353 0.96071 1.22408 0.99847 0.99876 0.98749 1.22198 1.01591 0.98913 1.43105 0.95295 1.26871 1.09823 0.91243 0.92152 1.70972 1.05611 1.31723 1.47362 0.83690 0.71269 0.76409 0.79267 1.20960 1.19613 1.17272 1.17750 1.18378 0.99692 0.90463 1.21141 0.91463 0.89611 0.97444 1.20572 1.02746 1.01245 0.89762 1.76459 1.29123 1.21435 1.07726 1.83768 1.55836 1.19675 1.01183 1.23352 0.96541 0.99378 0.90008 1.41533 1.62627 1.28511 1.01354 0.90142 0.89692 0.92922 0.78950 0.93244 0.93823 0.94050 0.93321 0.90242 0.89146 0.90109 0.75773 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.52 71.23 0.68 -2.63 16 2 C 0.10 3.02 5.24 45.29 0.24 3.25 16 3 N -0.24 -8.85 11.48 -42.86 -0.49 -9.34 16 4 N -0.64 -26.74 5.95 -172.52 -1.03 -27.77 16 5 C 0.29 13.54 2.83 44.25 0.13 13.66 16 6 H 0.02 1.05 6.72 -2.39 -0.02 1.04 16 7 C -0.15 -6.53 9.24 71.98 0.67 -5.87 16 8 C -0.62 -34.04 8.96 25.60 0.23 -33.81 16 9 H 0.03 1.72 8.01 -2.91 -0.02 1.70 16 10 C 0.00 0.03 5.19 84.66 0.44 0.47 16 11 N -0.92 -55.59 13.70 21.45 0.29 -55.30 16 12 Si 1.07 48.94 26.44 68.60 1.81 50.75 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.25 -10.27 6.14 99.48 0.61 -9.66 16 16 C -0.24 -6.54 5.53 -20.59 -0.11 -6.65 16 17 C 0.18 4.83 6.74 43.07 0.29 5.12 16 18 C -0.08 -1.88 9.96 71.24 0.71 -1.17 16 19 N -0.52 -14.26 11.97 -50.79 -0.61 -14.87 16 20 S 0.25 5.43 23.69 -56.49 -1.34 4.09 16 21 C 0.15 3.40 7.77 83.67 0.65 4.05 16 22 N -0.80 -13.99 9.08 -53.91 -0.49 -14.48 16 23 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 24 H 0.08 1.80 8.11 -2.39 -0.02 1.78 16 25 H 0.05 1.46 6.35 -2.39 -0.02 1.45 16 26 H 0.37 14.99 6.34 -213.32 -1.35 13.64 16 27 H 0.05 2.19 5.47 -2.39 -0.01 2.18 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 31 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.80 7.36 -2.39 -0.02 1.78 16 34 H 0.41 7.86 8.56 -92.71 -0.79 7.06 16 35 H 0.42 4.67 8.95 -92.71 -0.83 3.84 16 Total: -1.00 -65.34 308.94 0.10 -65.24 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -1.96 Total: 25.25 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 3.91 Total: -23.58 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -2.32 Total: -121.76 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.81 Total: 50.75 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.34 Total: 4.09 kcal Total: -65.34 0.10 -65.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.979 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds