Wall clock time and date at job start Mon Mar 30 2020 05:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41378 * 126.80129 * 2 1 4 4 C 1.35452 * 103.98640 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.77811 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47381 * 89.99926 * 5 4 3 7 7 C 1.42893 * 114.00035 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47010 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00311 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00067 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.46943 * 34.99959 * 11 10 8 13 13 C 1.53000 * 109.47074 * 275.00178 * 11 10 8 14 14 C 1.50696 * 109.46871 * 154.99639 * 11 10 8 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.34044 * 106.44700 * 0.23914 * 4 3 2 23 23 N 1.20931 * 111.56349 * 359.56817 * 22 4 3 24 24 H 1.09004 * 109.47238 * 89.99972 * 1 2 3 25 25 H 1.09000 * 109.47346 * 209.99766 * 1 2 3 26 26 H 1.08997 * 109.47626 * 329.99771 * 1 2 3 27 27 H 1.07994 * 128.00874 * 0.03649 * 3 2 1 28 28 H 1.09000 * 109.46994 * 329.99832 * 5 4 3 29 29 H 1.09008 * 109.47177 * 209.99699 * 5 4 3 30 30 H 1.08996 * 109.47563 * 59.99565 * 7 6 5 31 31 H 1.09005 * 109.47358 * 299.99732 * 7 6 5 32 32 H 0.97000 * 119.99961 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47024 * 59.99854 * 13 11 10 34 34 H 1.08998 * 109.46637 * 179.97438 * 13 11 10 35 35 H 1.08997 * 109.46749 * 299.99711 * 13 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3695 -0.0014 6 8 5.3137 1.6109 1.3456 7 6 6.5420 2.3324 1.4577 8 6 6.8782 2.5287 2.9135 9 8 6.1386 2.0940 3.7707 10 7 8.0005 3.1883 3.2629 11 6 8.3271 3.3797 4.6782 12 1 8.0058 2.5067 5.2465 13 6 7.6078 4.6235 5.2040 14 6 9.8157 3.5581 4.8304 15 1 10.4546 3.5320 3.9600 16 6 10.3621 3.7547 6.0810 17 7 11.6612 3.9109 6.2139 18 14 9.2572 3.7990 7.5865 19 1 8.8135 5.1944 7.8341 20 1 8.0710 2.9360 7.3556 21 1 10.0088 3.3018 8.7669 22 8 3.4538 -0.7253 -0.0063 23 7 2.2867 -1.0423 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.0709 2.1742 0.0005 28 1 4.7647 2.3209 -0.5153 29 1 5.6657 0.7857 -0.5155 30 1 6.4383 3.3037 0.9741 31 1 7.3398 1.7690 0.9737 32 1 8.5919 3.5363 2.5773 33 1 6.5312 4.4943 5.0938 34 1 7.8505 4.7655 6.2570 35 1 7.9291 5.4963 4.6357 36 1 12.0455 4.0495 7.0936 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338117741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:03 Heat of formation + Delta-G solvation = -14.986638 kcal Electronic energy + Delta-G solvation = -19625.397543 eV Core-core repulsion = 16306.784988 eV Total energy + Delta-G solvation = -3318.612555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -45.10935 -39.33696 -37.71040 -35.02314 -34.96538 -32.85442 -32.42754 -30.35719 -28.93664 -28.07400 -26.13069 -25.17569 -23.29058 -21.42339 -20.50334 -19.69071 -17.93396 -17.84244 -17.16006 -16.66902 -16.35410 -16.03288 -15.28107 -15.07986 -14.48342 -14.13929 -13.69460 -13.64929 -13.33663 -13.19928 -13.00961 -12.70357 -12.39766 -12.21814 -11.93043 -11.80923 -11.38687 -11.24050 -10.83024 -10.22917 -10.20732 -9.95536 -9.77690 -9.70105 -9.26011 -9.14271 -8.78004 -8.21009 -6.23092 -4.25932 1.11820 1.97146 2.71650 3.13871 3.22868 3.33375 3.35452 3.40570 3.95460 4.09318 4.30415 4.41243 4.71260 4.77343 4.89973 5.04689 5.07625 5.11587 5.16640 5.21253 5.27743 5.29679 5.48786 5.51941 5.85207 6.28834 6.35144 6.53375 6.73571 6.84718 7.16975 7.25030 7.48460 8.04701 8.11339 8.47224 8.73035 8.88073 9.37605 10.88957 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041594 B = 0.003164 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.017027 B = 8848.762063 C = 9121.655273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.208 4.208 4 C -0.025 4.025 5 C 0.140 3.860 6 O -0.356 6.356 7 C 0.044 3.956 8 C 0.503 3.497 9 O -0.534 6.534 10 N -0.700 5.700 11 C 0.238 3.762 12 H 0.049 0.951 13 C -0.162 4.162 14 C -0.536 4.536 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.885 3.115 19 H -0.276 1.276 20 H -0.261 1.261 21 H -0.294 1.294 22 O 0.108 5.892 23 N -0.361 5.361 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.174 0.826 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 -1.939 -16.005 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.230 4.230 4 C -0.089 4.089 5 C 0.062 3.938 6 O -0.274 6.274 7 C -0.036 4.036 8 C 0.287 3.713 9 O -0.411 6.411 10 N -0.350 5.350 11 C 0.135 3.865 12 H 0.067 0.933 13 C -0.220 4.220 14 C -0.574 4.574 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.186 1.186 21 H -0.221 1.221 22 O 0.040 5.960 23 N -0.065 5.065 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.191 0.809 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.925 -3.611 -15.071 22.949 hybrid contribution -0.028 1.272 0.343 1.318 sum -16.953 -2.339 -14.728 22.579 Atomic orbital electron populations 1.20165 0.85799 1.03972 1.03289 1.23629 0.99168 0.88791 1.03191 1.22481 0.91031 1.01328 1.08132 1.23968 0.97480 0.83822 1.03591 1.20653 0.89804 0.97461 0.85833 1.88107 1.39389 1.76267 1.23597 1.22356 0.87291 0.97275 0.96673 1.20043 0.82334 0.79361 0.89604 1.90701 1.49464 1.49406 1.51557 1.46087 1.22583 1.55764 1.10576 1.19119 0.95670 0.94376 0.77336 0.93295 1.22456 0.98707 1.00477 1.00363 1.21024 0.89225 1.51698 0.95424 0.90121 1.24830 0.95000 0.93922 0.98779 1.69865 1.10583 1.48188 1.24241 0.86878 0.80780 0.78661 0.82215 1.20269 1.18604 1.22106 1.84834 1.21542 1.22620 1.66996 1.73860 0.89321 1.24188 1.19121 0.90178 0.90495 0.89900 0.80856 0.89428 0.90392 0.90145 0.89938 0.77075 0.94503 0.93385 0.92747 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.47 36.00 0.38 -0.17 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -2.14 11.06 -39.38 -0.44 -2.57 16 4 C -0.02 -0.28 7.12 -35.31 -0.25 -0.53 16 5 C 0.14 1.31 6.50 36.00 0.23 1.54 16 6 O -0.36 -5.03 9.86 -55.14 -0.54 -5.57 16 7 C 0.04 0.55 6.42 36.00 0.23 0.78 16 8 C 0.50 9.34 7.87 -10.98 -0.09 9.25 16 9 O -0.53 -12.57 16.16 -14.35 -0.23 -12.81 16 10 N -0.70 -13.33 5.07 -54.93 -0.28 -13.61 16 11 C 0.24 5.62 2.15 -69.08 -0.15 5.47 16 12 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 13 C -0.16 -3.58 8.97 37.16 0.33 -3.25 16 14 C -0.54 -14.26 9.31 -34.44 -0.32 -14.58 16 15 H 0.08 2.23 7.98 -52.49 -0.42 1.82 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 17 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 18 Si 0.89 21.71 24.37 -169.99 -4.14 17.56 16 19 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 20 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 O 0.11 1.45 11.20 17.16 0.19 1.64 16 23 N -0.36 -4.89 12.07 33.42 0.40 -4.49 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 6.30 8.54 -40.82 -0.35 5.95 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.10 3.28 -51.93 -0.17 0.93 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -35.07 311.91 -4.58 -39.65 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.69 Total: 0.79 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.77 Total: -2.45 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.90 Total: -43.51 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.58 Total: -16.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.07 -4.58 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338117741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.666 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds