Wall clock time and date at job start Mon Mar 30 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41378 * 126.80129 * 2 1 4 4 C 1.35452 * 103.98640 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.77811 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47381 * 89.99926 * 5 4 3 7 7 C 1.42893 * 114.00035 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47010 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00311 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00067 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.46943 * 34.99959 * 11 10 8 13 13 C 1.53000 * 109.47074 * 275.00178 * 11 10 8 14 14 C 1.50696 * 109.46871 * 154.99639 * 11 10 8 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 O 1.34044 * 106.44700 * 0.23914 * 4 3 2 23 23 N 1.20931 * 111.56349 * 359.56817 * 22 4 3 24 24 H 1.09004 * 109.47238 * 89.99972 * 1 2 3 25 25 H 1.09000 * 109.47346 * 209.99766 * 1 2 3 26 26 H 1.08997 * 109.47626 * 329.99771 * 1 2 3 27 27 H 1.07994 * 128.00874 * 0.03649 * 3 2 1 28 28 H 1.09000 * 109.46994 * 329.99832 * 5 4 3 29 29 H 1.09008 * 109.47177 * 209.99699 * 5 4 3 30 30 H 1.08996 * 109.47563 * 59.99565 * 7 6 5 31 31 H 1.09005 * 109.47358 * 299.99732 * 7 6 5 32 32 H 0.97000 * 119.99961 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47024 * 59.99854 * 13 11 10 34 34 H 1.08998 * 109.46637 * 179.97438 * 13 11 10 35 35 H 1.08997 * 109.46749 * 299.99711 * 13 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3695 -0.0014 6 8 5.3137 1.6109 1.3456 7 6 6.5420 2.3324 1.4577 8 6 6.8782 2.5287 2.9135 9 8 6.1386 2.0940 3.7707 10 7 8.0005 3.1883 3.2629 11 6 8.3271 3.3797 4.6782 12 1 8.0058 2.5067 5.2465 13 6 7.6078 4.6235 5.2040 14 6 9.8157 3.5581 4.8304 15 1 10.4546 3.5320 3.9600 16 6 10.3621 3.7547 6.0810 17 7 11.6612 3.9109 6.2139 18 14 9.2572 3.7990 7.5865 19 1 8.8135 5.1944 7.8341 20 1 8.0710 2.9360 7.3556 21 1 10.0088 3.3018 8.7669 22 8 3.4538 -0.7253 -0.0063 23 7 2.2867 -1.0423 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.0709 2.1742 0.0005 28 1 4.7647 2.3209 -0.5153 29 1 5.6657 0.7857 -0.5155 30 1 6.4383 3.3037 0.9741 31 1 7.3398 1.7690 0.9737 32 1 8.5919 3.5363 2.5773 33 1 6.5312 4.4943 5.0938 34 1 7.8505 4.7655 6.2570 35 1 7.9291 5.4963 4.6357 36 1 12.0455 4.0495 7.0936 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338117741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:02 Heat of formation + Delta-G solvation = -41.481228 kcal Electronic energy + Delta-G solvation = -19626.546434 eV Core-core repulsion = 16306.784988 eV Total energy + Delta-G solvation = -3319.761446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -45.94801 -40.74063 -38.77616 -36.76715 -35.77809 -34.41179 -33.67427 -32.06181 -29.60886 -29.12833 -27.24913 -26.96055 -24.10432 -23.12160 -21.42530 -21.16798 -19.26169 -18.81421 -18.39955 -17.80276 -17.65954 -17.22698 -16.86983 -16.22510 -15.67420 -15.60704 -14.99089 -14.74435 -14.44497 -14.20320 -14.12157 -14.01010 -13.68628 -13.53206 -13.37888 -13.05968 -12.80165 -12.71909 -12.15621 -12.13037 -11.62346 -11.27736 -10.99749 -10.87508 -10.78310 -10.76503 -10.51711 -9.89103 -8.38056 -6.43391 0.28424 1.18578 1.27013 1.36179 1.45213 1.72965 1.90422 2.25276 2.26652 2.98351 3.17322 3.25187 3.54016 3.86122 4.00919 4.15387 4.28156 4.31458 4.39918 4.45826 4.46924 4.57544 4.59515 4.68130 4.72061 4.88126 4.89277 5.00868 5.22622 5.32234 5.43429 5.63370 5.94410 6.16985 6.58707 6.88160 7.20191 7.21558 7.46718 8.76927 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041594 B = 0.003164 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.017027 B = 8848.762063 C = 9121.655273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.005 3.995 3 C -0.209 4.209 4 C -0.040 4.040 5 C 0.138 3.862 6 O -0.397 6.397 7 C 0.056 3.944 8 C 0.496 3.504 9 O -0.591 6.591 10 N -0.696 5.696 11 C 0.241 3.759 12 H 0.017 0.983 13 C -0.155 4.155 14 C -0.531 4.531 15 H 0.063 0.937 16 C 0.030 3.970 17 N -0.932 5.932 18 Si 0.936 3.064 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.293 1.293 22 O 0.080 5.920 23 N -0.398 5.398 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.203 0.797 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.413 0.587 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.581 -0.556 -17.564 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C -0.229 4.229 4 C -0.104 4.104 5 C 0.062 3.938 6 O -0.316 6.316 7 C -0.023 4.023 8 C 0.283 3.717 9 O -0.472 6.472 10 N -0.347 5.347 11 C 0.136 3.864 12 H 0.035 0.965 13 C -0.213 4.213 14 C -0.569 4.569 15 H 0.081 0.919 16 C -0.170 4.170 17 N -0.571 5.571 18 Si 0.763 3.237 19 H -0.184 1.184 20 H -0.192 1.192 21 H -0.221 1.221 22 O 0.016 5.984 23 N -0.106 5.106 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.220 0.780 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.249 0.751 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.255 -2.207 -16.681 24.826 hybrid contribution 0.369 0.810 0.740 1.157 sum -17.886 -1.397 -15.941 23.999 Atomic orbital electron populations 1.20340 0.83436 1.04745 1.04721 1.24342 1.00829 0.88647 1.01542 1.22933 0.90452 1.02430 1.07132 1.24572 0.99044 0.83294 1.03440 1.21027 0.89333 0.99404 0.84031 1.88031 1.39992 1.76900 1.26695 1.22333 0.87968 1.00158 0.91796 1.21161 0.80880 0.77435 0.92180 1.90675 1.51114 1.51447 1.53944 1.45874 1.23532 1.56179 1.09125 1.18750 0.93745 0.93872 0.79994 0.96488 1.22343 0.98937 1.00118 0.99948 1.21255 0.90755 1.50175 0.94723 0.91927 1.25519 0.95956 0.94030 1.01482 1.69965 1.12098 1.50032 1.25015 0.86055 0.78931 0.79418 0.79252 1.18351 1.19178 1.22074 1.84779 1.21697 1.23967 1.67935 1.73853 0.89806 1.25752 1.21218 0.88318 0.90853 0.87963 0.78031 0.85427 0.88344 0.85583 0.86736 0.75099 0.93755 0.94262 0.91074 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.47 71.23 0.75 -0.21 16 2 C 0.00 0.10 7.33 43.58 0.32 0.42 16 3 C -0.21 -3.85 11.06 22.40 0.25 -3.60 16 4 C -0.04 -0.85 7.12 25.04 0.18 -0.67 16 5 C 0.14 2.13 6.50 71.23 0.46 2.60 16 6 O -0.40 -10.19 9.86 -129.94 -1.28 -11.47 16 7 C 0.06 1.19 6.42 71.24 0.46 1.65 16 8 C 0.50 17.62 7.87 87.66 0.69 18.31 16 9 O -0.59 -27.77 16.16 16.01 0.26 -27.51 16 10 N -0.70 -25.45 5.07 -446.08 -2.26 -27.71 16 11 C 0.24 11.27 2.15 44.24 0.10 11.36 16 12 H 0.02 0.92 6.63 -2.38 -0.02 0.90 16 13 C -0.16 -6.64 8.97 71.98 0.65 -5.99 16 14 C -0.53 -28.27 9.31 25.60 0.24 -28.03 16 15 H 0.06 3.49 7.98 -2.91 -0.02 3.46 16 16 C 0.03 1.68 5.45 84.66 0.46 2.14 16 17 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 18 Si 0.94 44.70 24.37 68.60 1.67 46.37 16 19 H -0.26 -11.50 6.87 99.48 0.68 -10.81 16 20 H -0.27 -12.88 6.53 99.48 0.65 -12.23 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 O 0.08 2.16 11.20 71.58 0.80 2.96 16 23 N -0.40 -10.85 12.07 -49.55 -0.60 -11.45 16 24 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.41 12.20 8.54 -92.71 -0.79 11.41 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.73 3.28 -2.39 -0.01 1.72 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.06 311.91 3.66 -75.39 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.23 Total: 10.33 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 4.54 Total: -2.03 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -2.56 Total: -94.04 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.22 Total: -36.02 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.67 Total: 46.37 kcal Total: -79.06 3.66 -75.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338117741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.912 kcal (2) G-P(sol) polarization free energy of solvation -79.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.01 seconds