Wall clock time and date at job start Mon Mar 30 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00398 * 2 1 4 4 H 1.48505 * 109.47051 * 270.00043 * 3 2 1 5 5 H 1.48499 * 109.46669 * 29.99611 * 3 2 1 6 6 H 1.48496 * 109.47245 * 150.00020 * 3 2 1 7 7 C 1.37881 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99555 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 179.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46626 * 65.00075 * 12 11 10 14 14 C 1.46955 * 110.99727 * 190.43154 * 13 12 11 15 15 C 1.53497 * 109.78436 * 164.72995 * 14 13 12 16 16 N 1.46259 * 108.10921 * 49.72821 * 15 14 13 17 17 C 1.35147 * 130.05387 * 163.54051 * 16 15 14 18 18 O 1.35532 * 126.59882 * 0.31588 * 17 16 15 19 19 N 1.31462 * 106.80905 * 180.30912 * 17 16 15 20 20 N 1.28953 * 109.94191 * 359.93449 * 19 17 16 21 21 C 1.29402 * 109.79116 * 359.94268 * 20 19 17 22 22 C 1.47397 * 111.00111 * 66.05048 * 13 12 11 23 23 H 0.97003 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 25 25 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 26 26 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 27 27 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 28 28 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 29 29 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 30 30 H 1.08997 * 109.41342 * 284.84901 * 14 13 12 31 31 H 1.08999 * 109.41368 * 44.64963 * 14 13 12 32 32 H 1.08992 * 109.78147 * 290.04964 * 15 14 13 33 33 H 1.09003 * 109.73498 * 169.37706 * 15 14 13 34 34 H 0.96702 * 114.00208 * 89.99385 * 18 17 16 35 35 H 1.09004 * 109.75872 * 294.04786 * 22 13 12 36 36 H 1.08998 * 109.76554 * 54.76457 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 8 3.9877 -2.5414 -0.0010 11 6 5.4123 -2.6543 -0.0021 12 6 5.8068 -4.1326 -0.0025 13 7 5.3665 -4.7564 -1.2575 14 6 5.5032 -6.2183 -1.1952 15 6 4.7009 -6.8641 -2.3333 16 7 5.0570 -6.1887 -3.5808 17 6 4.8604 -6.5692 -4.8626 18 8 4.2584 -7.7080 -5.2842 19 7 5.3653 -5.6223 -5.6219 20 7 5.8578 -4.6845 -4.8865 21 6 5.6953 -4.9770 -3.6365 22 6 6.0971 -4.1983 -2.4096 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 5.8158 -2.1705 0.8875 27 1 5.8144 -2.1711 -0.8925 28 1 6.8896 -4.2197 0.0863 29 1 5.3316 -4.6357 0.8396 30 1 6.5546 -6.4884 -1.2938 31 1 5.1262 -6.5769 -0.2374 32 1 3.6337 -6.7487 -2.1440 33 1 4.9496 -7.9230 -2.4042 34 1 3.3031 -7.6247 -5.4096 35 1 5.8358 -3.1478 -2.5378 36 1 7.1706 -4.2937 -2.2467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339089324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:17 Heat of formation + Delta-G solvation = 20.042464 kcal Electronic energy + Delta-G solvation = -20497.059138 eV Core-core repulsion = 17212.258310 eV Total energy + Delta-G solvation = -3284.800828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.28416 -38.74254 -37.83914 -36.74686 -34.66712 -32.64651 -31.31059 -30.55639 -28.75361 -27.45958 -25.79698 -23.68879 -22.53840 -21.87055 -21.47040 -20.05084 -19.13991 -17.29778 -16.91633 -16.60486 -16.13126 -15.95917 -15.47445 -14.81513 -14.63116 -14.47819 -14.22527 -14.05865 -13.15718 -12.91090 -12.76808 -12.62841 -12.30968 -12.16276 -12.02824 -11.54504 -11.43079 -10.96539 -10.76330 -10.61665 -10.33982 -10.27404 -9.87403 -9.22234 -9.17954 -8.86836 -8.56580 -8.46468 -6.12079 -4.10952 1.45564 2.00920 2.62321 3.24955 3.31879 3.32131 3.33870 3.56997 4.06319 4.16302 4.35050 4.42866 4.62344 4.71087 4.98742 5.02819 5.15351 5.18025 5.19596 5.36126 5.38981 5.52891 5.54612 5.66400 5.77522 5.84666 5.97017 6.30302 6.57504 6.64915 6.71871 6.98543 7.14075 7.59055 8.00374 8.54438 8.65765 8.99498 9.47394 11.01038 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.004457 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.234004 B = 6280.657277 C = 6688.959887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.168 3.832 10 O -0.366 6.366 11 C 0.058 3.942 12 C 0.065 3.935 13 N -0.529 5.529 14 C 0.040 3.960 15 C 0.111 3.889 16 N -0.478 5.478 17 C 0.351 3.649 18 O -0.438 6.438 19 N -0.290 5.290 20 N -0.272 5.272 21 C 0.203 3.797 22 C 0.140 3.860 23 H 0.266 0.734 24 H 0.001 0.999 25 H -0.002 1.002 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.407 0.593 35 H 0.121 0.879 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.105 -14.311 -1.802 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.093 3.907 10 O -0.285 6.285 11 C -0.020 4.020 12 C -0.062 4.062 13 N -0.254 5.254 14 C -0.089 4.089 15 C -0.012 4.012 16 N -0.181 5.181 17 C 0.046 3.954 18 O -0.238 6.238 19 N -0.141 5.141 20 N -0.114 5.114 21 C -0.065 4.065 22 C 0.010 3.990 23 H 0.076 0.924 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.265 0.735 35 H 0.139 0.861 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.180 -13.906 -3.122 19.412 hybrid contribution 0.265 0.243 1.149 1.204 sum 13.445 -13.663 -1.973 19.270 Atomic orbital electron populations 1.69873 1.06083 1.27074 1.50430 1.24767 0.94790 0.98747 0.94654 0.86859 0.80301 0.83803 0.78829 1.19879 1.20816 1.19128 1.20867 0.88276 0.95237 1.51095 0.90038 1.20596 0.96222 0.79695 0.94204 1.87997 1.16544 1.29017 1.94918 1.22364 0.86089 0.94108 0.99472 1.22201 0.97555 0.95616 0.90782 1.61926 1.57058 1.03246 1.03180 1.22458 0.98622 0.88777 0.98995 1.22186 1.02347 0.96710 0.79982 1.46604 1.45449 1.18318 1.07728 1.21722 1.02470 0.90690 0.80509 1.84862 1.27397 1.25773 1.85775 1.74905 1.15806 0.98745 1.24604 1.73934 1.19321 1.19125 0.99043 1.24493 0.99724 0.85445 0.96857 1.20771 0.96189 0.99072 0.82949 0.92383 0.98123 0.98456 0.93541 0.94143 0.93269 0.89052 0.93534 0.87534 0.88025 0.88334 0.73534 0.86087 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -15.20 9.99 -34.44 -0.34 -15.55 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.17 4.16 4.76 36.01 0.17 4.33 16 10 O -0.37 -8.00 10.27 -35.23 -0.36 -8.36 16 11 C 0.06 0.89 6.00 37.16 0.22 1.11 16 12 C 0.07 0.74 5.35 -3.82 -0.02 0.72 16 13 N -0.53 -6.42 4.59 -235.23 -1.08 -7.50 16 14 C 0.04 0.35 5.55 -3.54 -0.02 0.33 16 15 C 0.11 0.99 7.31 -3.91 -0.03 0.96 16 16 N -0.48 -6.05 3.17 -115.30 -0.37 -6.42 16 17 C 0.35 4.78 9.33 -89.47 -0.84 3.94 16 18 O -0.44 -4.41 13.64 -18.29 -0.25 -4.66 16 19 N -0.29 -4.85 12.25 29.49 0.36 -4.49 16 20 N -0.27 -4.62 12.17 32.93 0.40 -4.22 16 21 C 0.20 2.93 7.90 -154.41 -1.22 1.72 16 22 C 0.14 1.72 5.47 -4.67 -0.03 1.69 16 23 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 25 H 0.00 -0.05 7.57 -51.93 -0.39 -0.45 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 28 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 30 H 0.05 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.11 0.74 7.81 -51.93 -0.41 0.33 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.41 2.09 9.06 45.56 0.41 2.50 16 35 H 0.12 1.63 6.68 -51.93 -0.35 1.28 16 36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -36.71 303.08 -6.79 -43.49 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.97 Total: -3.47 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.20 Total: 1.27 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.09 Total: -49.43 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.61 Total: -13.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.71 -6.79 -43.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339089324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.535 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds