Wall clock time and date at job start Mon Mar 30 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00398 * 2 1 4 4 H 1.48505 * 109.47051 * 270.00043 * 3 2 1 5 5 H 1.48499 * 109.46669 * 29.99611 * 3 2 1 6 6 H 1.48496 * 109.47245 * 150.00020 * 3 2 1 7 7 C 1.37881 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99555 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 179.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46626 * 65.00075 * 12 11 10 14 14 C 1.46955 * 110.99727 * 190.43154 * 13 12 11 15 15 C 1.53497 * 109.78436 * 164.72995 * 14 13 12 16 16 N 1.46259 * 108.10921 * 49.72821 * 15 14 13 17 17 C 1.35147 * 130.05387 * 163.54051 * 16 15 14 18 18 O 1.35532 * 126.59882 * 0.31588 * 17 16 15 19 19 N 1.31462 * 106.80905 * 180.30912 * 17 16 15 20 20 N 1.28953 * 109.94191 * 359.93449 * 19 17 16 21 21 C 1.29402 * 109.79116 * 359.94268 * 20 19 17 22 22 C 1.47397 * 111.00111 * 66.05048 * 13 12 11 23 23 H 0.97003 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 25 25 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 26 26 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 27 27 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 28 28 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 29 29 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 30 30 H 1.08997 * 109.41342 * 284.84901 * 14 13 12 31 31 H 1.08999 * 109.41368 * 44.64963 * 14 13 12 32 32 H 1.08992 * 109.78147 * 290.04964 * 15 14 13 33 33 H 1.09003 * 109.73498 * 169.37706 * 15 14 13 34 34 H 0.96702 * 114.00208 * 89.99385 * 18 17 16 35 35 H 1.09004 * 109.75872 * 294.04786 * 22 13 12 36 36 H 1.08998 * 109.76554 * 54.76457 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 8 3.9877 -2.5414 -0.0010 11 6 5.4123 -2.6543 -0.0021 12 6 5.8068 -4.1326 -0.0025 13 7 5.3665 -4.7564 -1.2575 14 6 5.5032 -6.2183 -1.1952 15 6 4.7009 -6.8641 -2.3333 16 7 5.0570 -6.1887 -3.5808 17 6 4.8604 -6.5692 -4.8626 18 8 4.2584 -7.7080 -5.2842 19 7 5.3653 -5.6223 -5.6219 20 7 5.8578 -4.6845 -4.8865 21 6 5.6953 -4.9770 -3.6365 22 6 6.0971 -4.1983 -2.4096 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 5.8158 -2.1705 0.8875 27 1 5.8144 -2.1711 -0.8925 28 1 6.8896 -4.2197 0.0863 29 1 5.3316 -4.6357 0.8396 30 1 6.5546 -6.4884 -1.2938 31 1 5.1262 -6.5769 -0.2374 32 1 3.6337 -6.7487 -2.1440 33 1 4.9496 -7.9230 -2.4042 34 1 3.3031 -7.6247 -5.4096 35 1 5.8358 -3.1478 -2.5378 36 1 7.1706 -4.2937 -2.2467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339089324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:16 Heat of formation + Delta-G solvation = -12.335544 kcal Electronic energy + Delta-G solvation = -20498.463153 eV Core-core repulsion = 17212.258310 eV Total energy + Delta-G solvation = -3286.204843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.31343 -39.69566 -38.71805 -38.20001 -35.69417 -34.78218 -32.32053 -31.61074 -30.19044 -28.99209 -26.78603 -24.60056 -23.92728 -23.51199 -22.52017 -20.93579 -20.02588 -19.02629 -18.21883 -17.57375 -17.45747 -17.06285 -16.68390 -16.22402 -15.83471 -15.60351 -15.47352 -15.05464 -14.65989 -14.21653 -13.93694 -13.74184 -13.46562 -13.25891 -13.12599 -12.82915 -12.71491 -12.50471 -12.31613 -11.95455 -11.78154 -11.39141 -11.26497 -11.18998 -10.90170 -10.28483 -10.23417 -9.36855 -8.35607 -6.42490 0.48519 1.08704 1.34516 1.37287 1.47643 1.53711 2.30664 2.49866 2.69454 2.97805 3.16046 3.21973 3.42556 3.77228 4.02256 4.15244 4.19247 4.25320 4.34413 4.46843 4.57955 4.59830 4.64594 4.67319 4.69190 4.79232 4.87181 4.97936 5.07612 5.47260 5.48240 5.81363 5.89937 6.01325 6.36648 6.62143 6.84249 7.22494 7.46477 8.81612 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.004457 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.234004 B = 6280.657277 C = 6688.959887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.540 4.540 8 H 0.029 0.971 9 C 0.180 3.820 10 O -0.392 6.392 11 C 0.044 3.956 12 C 0.074 3.926 13 N -0.558 5.558 14 C 0.042 3.958 15 C 0.105 3.895 16 N -0.476 5.476 17 C 0.360 3.640 18 O -0.434 6.434 19 N -0.335 5.335 20 N -0.311 5.311 21 C 0.197 3.803 22 C 0.144 3.856 23 H 0.272 0.728 24 H 0.013 0.987 25 H 0.004 0.996 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.429 0.571 35 H 0.102 0.898 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.326 -14.528 -0.694 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.164 1.164 7 C -0.578 4.578 8 H 0.047 0.953 9 C 0.104 3.896 10 O -0.312 6.312 11 C -0.033 4.033 12 C -0.053 4.053 13 N -0.284 5.284 14 C -0.085 4.085 15 C -0.017 4.017 16 N -0.179 5.179 17 C 0.054 3.946 18 O -0.237 6.237 19 N -0.186 5.186 20 N -0.153 5.153 21 C -0.072 4.072 22 C 0.015 3.985 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.022 0.978 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.290 0.710 35 H 0.120 0.880 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.398 -14.165 -2.004 21.018 hybrid contribution -0.504 0.129 0.805 0.959 sum 14.894 -14.036 -1.199 20.500 Atomic orbital electron populations 1.70036 1.08297 1.28642 1.51465 1.25834 0.95756 1.03389 0.93622 0.85637 0.79655 0.77658 0.79566 1.18931 1.19950 1.16434 1.21181 0.91223 0.93623 1.51791 0.95275 1.20253 0.93058 0.81603 0.94706 1.87942 1.20956 1.27148 1.95130 1.22810 0.82366 0.97578 1.00553 1.22173 0.99840 0.92727 0.90544 1.61834 1.58021 1.05355 1.03219 1.22566 0.99770 0.86560 0.99651 1.22526 1.02342 0.98156 0.78635 1.46801 1.44742 1.17921 1.08407 1.21767 1.01514 0.90556 0.80807 1.84833 1.29227 1.24073 1.85539 1.74768 1.17770 1.00034 1.26004 1.73816 1.20929 1.20141 1.00381 1.24899 0.99341 0.86162 0.96800 1.20771 0.97744 0.97685 0.82343 0.91946 0.96957 0.97842 0.91888 0.93490 0.89231 0.88622 0.91679 0.85486 0.88420 0.85317 0.70955 0.87957 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.01 0.69 5.47 84.66 0.46 1.15 16 3 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 7 C -0.54 -32.67 9.99 25.60 0.26 -32.41 16 8 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 9 C 0.18 8.77 4.76 71.24 0.34 9.11 16 10 O -0.39 -16.96 10.27 -148.98 -1.53 -18.49 16 11 C 0.04 1.25 6.00 71.98 0.43 1.68 16 12 C 0.07 1.44 5.35 86.31 0.46 1.90 16 13 N -0.56 -12.25 4.59 -898.13 -4.13 -16.38 16 14 C 0.04 0.60 5.55 86.46 0.48 1.08 16 15 C 0.10 1.63 7.31 86.59 0.63 2.26 16 16 N -0.48 -11.47 3.17 -630.14 -2.00 -13.47 16 17 C 0.36 9.56 9.33 179.95 1.68 11.24 16 18 O -0.43 -8.12 13.64 -88.35 -1.21 -9.32 16 19 N -0.33 -11.37 12.25 -173.95 -2.13 -13.50 16 20 N -0.31 -10.74 12.17 -49.72 -0.60 -11.34 16 21 C 0.20 5.60 7.90 137.81 1.09 6.69 16 22 C 0.14 3.31 5.47 85.48 0.47 3.78 16 23 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 24 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 25 H 0.00 0.18 7.57 -2.39 -0.02 0.16 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.27 6.46 -2.39 -0.02 1.26 16 28 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 29 H 0.10 1.80 7.86 -2.39 -0.02 1.78 16 30 H 0.07 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.13 1.28 7.81 -2.39 -0.02 1.26 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.43 3.76 9.06 -74.06 -0.67 3.09 16 35 H 0.10 2.71 6.68 -2.38 -0.02 2.69 16 36 H 0.10 1.63 8.09 -2.39 -0.02 1.61 16 Total: -1.00 -83.42 303.08 -2.73 -86.15 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 0.38 Total: 4.04 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.30 Total: 6.46 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -8.56 Total: -114.04 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -2.74 Total: -27.81 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -83.42 -2.73 -86.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339089324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.813 kcal (2) G-P(sol) polarization free energy of solvation -83.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds