Wall clock time and date at job start Mon Mar 30 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36028 * 117.00375 * 2 1 4 4 N 1.31067 * 125.87621 * 0.21821 * 3 2 1 5 5 N 1.40072 * 108.34053 * 180.25775 * 4 3 2 6 6 C 1.46497 * 126.01961 * 179.71514 * 5 4 3 7 7 C 1.35906 * 107.96024 * 359.70861 * 5 4 3 8 8 C 1.35634 * 107.64075 * 0.02562 * 7 5 4 9 9 N 1.40948 * 126.09609 * 179.97438 * 8 7 5 10 10 C 1.34784 * 119.99643 * 0.02841 * 9 8 7 11 11 O 1.21602 * 119.99880 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99632 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99693 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46660 * 35.00912 * 13 12 10 15 15 C 1.52997 * 109.47289 * 275.00198 * 13 12 10 16 16 C 1.50708 * 109.46796 * 155.00272 * 13 12 10 17 17 H 1.07995 * 119.99755 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99729 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99909 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46921 * 60.00420 * 20 18 16 22 22 H 1.48496 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46946 * 300.00103 * 20 18 16 24 24 H 1.09001 * 109.46608 * 60.00138 * 1 2 3 25 25 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47234 * 300.00431 * 1 2 3 27 27 H 1.08999 * 109.46787 * 269.99804 * 6 5 4 28 28 H 1.09010 * 109.47084 * 29.99427 * 6 5 4 29 29 H 1.09001 * 109.47059 * 149.99335 * 6 5 4 30 30 H 1.08002 * 126.17708 * 180.02562 * 7 5 4 31 31 H 0.96995 * 120.00694 * 180.02562 * 9 8 7 32 32 H 0.97000 * 120.00190 * 0.02562 * 12 10 9 33 33 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.46832 * 60.00146 * 15 13 12 35 35 H 1.09004 * 109.47261 * 300.00128 * 15 13 12 36 36 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 7 1.4491 2.3785 0.0040 5 7 2.4316 3.3769 -0.0035 6 6 2.1912 4.8220 -0.0081 7 6 3.6470 2.7689 -0.0058 8 6 3.4363 1.4290 -0.0003 9 7 4.4324 0.4318 -0.0009 10 6 5.7345 0.7799 -0.0068 11 8 6.0498 1.9543 -0.0120 12 7 6.6869 -0.1736 -0.0068 13 6 8.1022 0.2048 -0.0137 14 1 8.2380 1.1140 0.5719 15 6 8.5569 0.4525 -1.4534 16 6 8.9224 -0.9073 0.5878 17 1 8.4379 -1.8061 0.9396 18 6 10.2913 -0.7771 0.6890 19 7 10.8811 0.3177 0.2610 20 14 11.3079 -2.1552 1.4352 21 1 11.1234 -3.3942 0.6376 22 1 12.7423 -1.7712 1.4292 23 1 10.8661 -2.3955 2.8324 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.1277 5.1765 -1.0369 28 1 1.2556 5.0364 0.5085 29 1 3.0115 5.3284 0.5007 30 1 4.6072 3.2633 -0.0109 31 1 4.1809 -0.5050 0.0029 32 1 6.4354 -1.1104 -0.0030 33 1 9.6098 0.7345 -1.4585 34 1 7.9637 1.2569 -1.8884 35 1 8.4211 -0.4568 -2.0390 36 1 11.8442 0.4091 0.3319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354744850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:16 Heat of formation + Delta-G solvation = 22.447894 kcal Electronic energy + Delta-G solvation = -20263.147029 eV Core-core repulsion = 16978.450509 eV Total energy + Delta-G solvation = -3284.696520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.29217 -39.14477 -38.14911 -35.13716 -34.08142 -32.48346 -32.08859 -29.50363 -28.24531 -27.83553 -25.54977 -25.20033 -22.23999 -21.11230 -20.54836 -19.65580 -18.24099 -17.47144 -16.54852 -16.22454 -15.79022 -15.30764 -14.96506 -14.91531 -14.70356 -14.46113 -13.82055 -13.27688 -12.86016 -12.77162 -12.73046 -12.34889 -12.01067 -11.74753 -11.20045 -11.09255 -10.97659 -10.80598 -10.67864 -10.35780 -10.22873 -10.19215 -9.35180 -9.02170 -8.81295 -8.53239 -7.99100 -7.22873 -6.09997 -4.18703 1.95356 2.33104 2.85083 3.12112 3.27949 3.32975 3.34400 3.54952 4.05313 4.35146 4.55936 5.04062 5.08467 5.14172 5.15135 5.21459 5.23433 5.35325 5.36859 5.54071 5.87434 5.94738 6.74169 6.84357 7.02085 7.16067 7.21730 7.32358 7.36357 7.53015 7.65414 7.73202 7.90190 8.07549 8.18950 8.78141 8.92038 9.31570 9.50474 10.96077 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.004023 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.953397 B = 6959.153003 C = 7600.748492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.294 6.294 3 C 0.243 3.757 4 N -0.339 5.339 5 N -0.374 5.374 6 C 0.115 3.885 7 C 0.061 3.939 8 C 0.025 3.975 9 N -0.665 5.665 10 C 0.698 3.302 11 O -0.594 6.594 12 N -0.720 5.720 13 C 0.281 3.719 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.210 0.790 31 H 0.406 0.594 32 H 0.387 0.613 33 H 0.090 0.910 34 H 0.015 0.985 35 H 0.025 0.975 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 2.986 -1.068 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.198 6.198 3 C 0.037 3.963 4 N -0.178 5.178 5 N -0.165 5.165 6 C -0.026 4.026 7 C -0.085 4.085 8 C -0.080 4.080 9 N -0.314 5.314 10 C 0.398 3.602 11 O -0.474 6.474 12 N -0.371 5.371 13 C 0.179 3.821 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.226 0.774 31 H 0.240 0.760 32 H 0.219 0.781 33 H 0.108 0.892 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.162 4.503 -1.081 18.743 hybrid contribution 0.802 -1.992 0.350 2.175 sum -17.360 2.511 -0.730 17.556 Atomic orbital electron populations 1.22901 0.77726 1.03219 1.01953 1.86253 1.22044 1.21503 1.90020 1.20176 0.89558 0.85591 1.01024 1.77159 1.14384 0.94421 1.31857 1.47689 1.02883 1.05394 1.60554 1.21763 1.03764 0.73967 1.03110 1.23142 0.91126 0.91510 1.02691 1.16743 0.84856 0.88899 1.17496 1.42099 1.03182 1.07888 1.78238 1.16020 0.79749 0.86071 0.78364 1.90683 1.80775 1.16887 1.59036 1.45767 1.07536 1.07178 1.76570 1.18665 0.72564 0.96972 0.93868 0.93235 1.22104 1.03494 0.97542 0.97516 1.21189 0.91954 1.02731 1.41308 0.92111 1.24868 0.97607 0.95983 0.95194 1.69896 1.10389 1.26038 1.45818 0.86499 0.78967 0.81889 0.79674 1.20180 1.21159 1.20198 0.92667 0.88428 0.92644 0.91065 0.89714 0.89189 0.77378 0.75967 0.78103 0.89171 0.96565 0.95538 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.69 101.05 1.08 1.44 16 2 O -0.29 -4.03 10.58 -19.83 -0.21 -4.24 16 3 C 0.24 3.82 7.91 -16.97 -0.13 3.69 16 4 N -0.34 -5.13 11.96 30.64 0.37 -4.76 16 5 N -0.37 -5.23 4.04 -67.82 -0.27 -5.51 16 6 C 0.12 1.01 11.48 59.85 0.69 1.69 16 7 C 0.06 1.00 10.38 -16.68 -0.17 0.83 16 8 C 0.03 0.43 6.97 -83.68 -0.58 -0.15 16 9 N -0.67 -11.40 5.49 -14.28 -0.08 -11.47 16 10 C 0.70 14.45 8.50 -86.91 -0.74 13.71 16 11 O -0.59 -13.91 13.16 5.28 0.07 -13.84 16 12 N -0.72 -15.19 5.07 -59.80 -0.30 -15.50 16 13 C 0.28 7.15 2.56 -69.08 -0.18 6.98 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 16 C -0.53 -14.10 8.73 -34.44 -0.30 -14.41 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 20 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.21 3.60 5.84 -52.49 -0.31 3.29 16 31 H 0.41 5.88 8.84 -40.82 -0.36 5.51 16 32 H 0.39 7.07 8.55 -40.82 -0.35 6.72 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -32.32 312.33 -4.85 -37.17 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.65 Total: 9.85 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.09 Total: 12.14 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.34 Total: -61.38 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.14 Total: -18.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.32 -4.85 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354744850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.621 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds