Wall clock time and date at job start Mon Mar 30 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36028 * 117.00375 * 2 1 4 4 N 1.31067 * 125.87621 * 0.21821 * 3 2 1 5 5 N 1.40072 * 108.34053 * 180.25775 * 4 3 2 6 6 C 1.46497 * 126.01961 * 179.71514 * 5 4 3 7 7 C 1.35906 * 107.96024 * 359.70861 * 5 4 3 8 8 C 1.35634 * 107.64075 * 0.02562 * 7 5 4 9 9 N 1.40948 * 126.09609 * 179.97438 * 8 7 5 10 10 C 1.34784 * 119.99643 * 0.02841 * 9 8 7 11 11 O 1.21602 * 119.99880 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99632 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99693 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46660 * 35.00912 * 13 12 10 15 15 C 1.52997 * 109.47289 * 275.00198 * 13 12 10 16 16 C 1.50708 * 109.46796 * 155.00272 * 13 12 10 17 17 H 1.07995 * 119.99755 * 0.02562 * 16 13 12 18 18 C 1.37873 * 119.99729 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99909 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46921 * 60.00420 * 20 18 16 22 22 H 1.48496 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46946 * 300.00103 * 20 18 16 24 24 H 1.09001 * 109.46608 * 60.00138 * 1 2 3 25 25 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47234 * 300.00431 * 1 2 3 27 27 H 1.08999 * 109.46787 * 269.99804 * 6 5 4 28 28 H 1.09010 * 109.47084 * 29.99427 * 6 5 4 29 29 H 1.09001 * 109.47059 * 149.99335 * 6 5 4 30 30 H 1.08002 * 126.17708 * 180.02562 * 7 5 4 31 31 H 0.96995 * 120.00694 * 180.02562 * 9 8 7 32 32 H 0.97000 * 120.00190 * 0.02562 * 12 10 9 33 33 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.46832 * 60.00146 * 15 13 12 35 35 H 1.09004 * 109.47261 * 300.00128 * 15 13 12 36 36 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 7 1.4491 2.3785 0.0040 5 7 2.4316 3.3769 -0.0035 6 6 2.1912 4.8220 -0.0081 7 6 3.6470 2.7689 -0.0058 8 6 3.4363 1.4290 -0.0003 9 7 4.4324 0.4318 -0.0009 10 6 5.7345 0.7799 -0.0068 11 8 6.0498 1.9543 -0.0120 12 7 6.6869 -0.1736 -0.0068 13 6 8.1022 0.2048 -0.0137 14 1 8.2380 1.1140 0.5719 15 6 8.5569 0.4525 -1.4534 16 6 8.9224 -0.9073 0.5878 17 1 8.4379 -1.8061 0.9396 18 6 10.2913 -0.7771 0.6890 19 7 10.8811 0.3177 0.2610 20 14 11.3079 -2.1552 1.4352 21 1 11.1234 -3.3942 0.6376 22 1 12.7423 -1.7712 1.4292 23 1 10.8661 -2.3955 2.8324 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.1277 5.1765 -1.0369 28 1 1.2556 5.0364 0.5085 29 1 3.0115 5.3284 0.5007 30 1 4.6072 3.2633 -0.0109 31 1 4.1809 -0.5050 0.0029 32 1 6.4354 -1.1104 -0.0030 33 1 9.6098 0.7345 -1.4585 34 1 7.9637 1.2569 -1.8884 35 1 8.4211 -0.4568 -2.0390 36 1 11.8442 0.4091 0.3319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354744850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:11 Heat of formation + Delta-G solvation = -3.443520 kcal Electronic energy + Delta-G solvation = -20264.269765 eV Core-core repulsion = 16978.450509 eV Total energy + Delta-G solvation = -3285.819256 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49867 -40.74277 -39.17222 -36.93582 -35.62402 -34.30656 -33.24343 -31.13559 -29.71429 -28.73933 -27.28870 -26.52197 -23.79669 -22.43318 -21.95092 -21.35541 -19.62749 -19.03015 -17.73709 -17.63572 -17.29345 -16.92908 -16.26633 -16.16478 -15.93453 -15.70296 -15.37102 -15.04643 -14.32743 -14.06697 -13.82048 -13.59280 -13.45825 -12.97056 -12.85551 -12.79590 -12.69737 -12.23476 -12.13235 -12.09329 -11.86771 -11.71167 -11.07660 -11.06155 -10.55554 -9.98158 -9.75424 -8.54023 -8.13516 -6.30100 0.75388 1.28758 1.48436 1.50375 1.54351 1.57945 1.81561 2.36132 2.44794 2.48434 3.17108 3.40333 3.69501 4.07599 4.36535 4.40922 4.50163 4.53415 4.64221 4.68503 4.74378 4.78399 4.82452 5.00196 5.15208 5.43780 5.48517 5.63987 5.72392 5.89775 6.07272 6.14068 6.21028 6.32050 6.59852 6.77323 7.29235 7.38298 7.73627 8.92702 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.004023 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.953397 B = 6959.153003 C = 7600.748492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.242 3.758 4 N -0.341 5.341 5 N -0.367 5.367 6 C 0.102 3.898 7 C 0.057 3.943 8 C -0.006 4.006 9 N -0.648 5.648 10 C 0.696 3.304 11 O -0.625 6.625 12 N -0.715 5.715 13 C 0.289 3.711 14 H 0.004 0.996 15 C -0.134 4.134 16 C -0.547 4.547 17 H 0.072 0.928 18 C 0.017 3.983 19 N -0.916 5.916 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.057 0.943 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.198 0.802 31 H 0.419 0.581 32 H 0.402 0.598 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.037 0.963 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 1.920 -0.857 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.207 6.207 3 C 0.036 3.964 4 N -0.181 5.181 5 N -0.157 5.157 6 C -0.037 4.037 7 C -0.091 4.091 8 C -0.111 4.111 9 N -0.297 5.297 10 C 0.396 3.604 11 O -0.507 6.507 12 N -0.368 5.368 13 C 0.186 3.814 14 H 0.022 0.978 15 C -0.193 4.193 16 C -0.585 4.585 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.214 0.786 31 H 0.256 0.744 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.057 0.943 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.624 3.419 -0.873 19.939 hybrid contribution 1.093 -1.557 0.279 1.923 sum -18.531 1.862 -0.594 18.633 Atomic orbital electron populations 1.23197 0.75584 1.05392 1.02116 1.86244 1.24144 1.20551 1.89801 1.20194 0.89058 0.86359 1.00814 1.77145 1.14546 0.94528 1.31846 1.48149 1.01829 1.06854 1.58861 1.22216 1.05410 0.71238 1.04826 1.23002 0.91662 0.91753 1.02687 1.17004 0.85511 0.89147 1.19447 1.41765 1.01910 1.08816 1.77225 1.16067 0.80668 0.85423 0.78198 1.90671 1.81605 1.18174 1.60249 1.45381 1.06202 1.08142 1.77055 1.18268 0.74791 0.95132 0.93238 0.97774 1.21921 1.01953 0.97875 0.97525 1.21511 0.92456 1.03170 1.41406 0.90955 1.25748 0.98832 0.98282 0.95497 1.70042 1.10643 1.27953 1.46793 0.85407 0.77011 0.79036 0.78916 1.18982 1.21179 1.19710 0.92462 0.85319 0.92470 0.89332 0.87928 0.87526 0.78573 0.74419 0.76300 0.91365 0.96746 0.94345 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.69 113.37 1.21 1.76 16 2 O -0.30 -7.82 10.58 -93.86 -0.99 -8.81 16 3 C 0.24 7.34 7.91 85.40 0.68 8.01 16 4 N -0.34 -9.82 11.96 -170.24 -2.04 -11.86 16 5 N -0.37 -9.81 4.04 -368.49 -1.49 -11.30 16 6 C 0.10 1.59 11.48 127.77 1.47 3.05 16 7 C 0.06 1.85 10.38 83.46 0.87 2.71 16 8 C -0.01 -0.20 6.97 37.66 0.26 0.06 16 9 N -0.65 -21.95 5.49 -317.35 -1.74 -23.69 16 10 C 0.70 29.08 8.50 179.05 1.52 30.60 16 11 O -0.63 -30.05 13.16 -4.04 -0.05 -30.11 16 12 N -0.72 -30.22 5.07 -461.37 -2.34 -32.57 16 13 C 0.29 14.98 2.56 44.25 0.11 15.09 16 14 H 0.00 0.26 7.58 -2.39 -0.02 0.25 16 15 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 16 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.02 0.89 5.30 84.65 0.45 1.33 16 19 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 20 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.20 6.95 5.84 -2.91 -0.02 6.94 16 31 H 0.42 11.72 8.84 -92.71 -0.82 10.90 16 32 H 0.40 14.34 8.55 -92.71 -0.79 13.55 16 33 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.65 312.33 0.58 -69.06 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.49 Total: 29.38 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 7.46 Total: 27.90 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -7.36 Total: -131.23 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.05 Total: -38.92 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.65 0.58 -69.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354744850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.621 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds