Wall clock time and date at job start Mon Mar 30 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 N 1.46901 * 109.47078 * 120.00150 * 2 1 3 5 5 C 1.46897 * 110.99674 * 163.52784 * 4 2 1 6 6 C 1.50702 * 109.47398 * 288.30900 * 5 4 2 7 7 H 1.07995 * 119.99725 * 4.66921 * 6 5 4 8 8 C 1.37875 * 120.00069 * 184.66842 * 6 5 4 9 9 N 1.31518 * 119.99952 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47059 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46939 * 119.99660 * 10 8 6 13 13 H 1.48502 * 109.47326 * 240.00097 * 10 8 6 14 14 C 1.46901 * 110.99886 * 287.48200 * 4 2 1 15 15 C 1.50700 * 109.47181 * 77.59777 * 14 4 2 16 16 N 1.29915 * 125.36739 * 71.30810 * 15 14 4 17 17 C 1.36108 * 108.47040 * 179.97438 * 16 15 14 18 18 C 1.47281 * 126.45792 * 180.02562 * 17 16 15 19 19 O 1.21535 * 120.00027 * 179.97438 * 18 17 16 20 20 O 1.34778 * 119.99587 * 359.97438 * 18 17 16 21 21 C 1.36171 * 107.08331 * 0.02562 * 17 16 15 22 22 O 1.34065 * 125.36781 * 251.59397 * 15 14 4 23 23 H 1.08998 * 109.47080 * 309.74514 * 1 2 3 24 24 H 1.09002 * 109.47235 * 69.74526 * 1 2 3 25 25 H 1.09001 * 109.47129 * 189.74022 * 1 2 3 26 26 H 1.08999 * 109.46905 * 239.99789 * 2 1 3 27 27 H 1.08994 * 109.47511 * 171.43264 * 3 2 1 28 28 H 1.09005 * 109.46861 * 291.43580 * 3 2 1 29 29 H 1.09000 * 109.46694 * 51.42817 * 3 2 1 30 30 H 1.08991 * 109.47384 * 48.31597 * 5 4 2 31 31 H 1.09007 * 109.46976 * 168.31273 * 5 4 2 32 32 H 0.97003 * 119.99623 * 180.02562 * 9 8 6 33 33 H 1.09007 * 109.47064 * 317.59848 * 14 4 2 34 34 H 1.09001 * 109.47339 * 197.59662 * 14 4 2 35 35 H 0.96701 * 116.99463 * 180.02562 * 20 18 17 36 36 H 1.08002 * 126.52974 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4351 -1.0582 1.0551 6 6 3.5642 -2.1845 0.0622 7 1 2.6934 -2.5377 -0.4700 8 6 4.7942 -2.7641 -0.1667 9 7 5.8545 -2.3343 0.4818 10 14 4.9544 -4.1597 -1.3980 11 1 3.6239 -4.4543 -1.9882 12 1 5.8974 -3.7639 -2.4748 13 1 5.4690 -5.3706 -0.7095 14 6 1.8067 0.1235 2.4023 15 6 0.3601 0.0401 2.8162 16 7 -0.2141 -1.0025 3.3370 17 6 -1.5192 -0.7006 3.5780 18 6 -2.5309 -1.5963 4.1640 19 8 -3.6689 -1.2025 4.3284 20 8 -2.1947 -2.8526 4.5178 21 6 -1.7133 0.5856 3.1751 22 8 -0.5385 1.0282 2.7002 23 1 -0.3633 0.6571 0.7902 24 1 -0.3634 0.3558 -0.9641 25 1 -0.3633 -1.0129 0.1739 26 1 1.8933 -0.5139 -0.8900 27 1 3.1192 1.4463 0.1531 28 1 1.8070 1.9102 -0.9566 29 1 1.5570 1.9985 0.8035 30 1 3.9990 -0.1954 0.7012 31 1 3.8280 -1.3780 2.0203 32 1 6.7199 -2.7418 0.3204 33 1 2.0641 1.1608 2.1878 34 1 2.4377 -0.2480 3.2097 35 1 -2.8927 -3.4032 4.8980 36 1 -2.6374 1.1424 3.2249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386956171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:04 Heat of formation + Delta-G solvation = -54.099257 kcal Electronic energy + Delta-G solvation = -20797.802667 eV Core-core repulsion = 17477.494062 eV Total energy + Delta-G solvation = -3320.308605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.47536 -40.02080 -37.95871 -36.19401 -34.81462 -32.88801 -31.71647 -30.49186 -27.69256 -26.83319 -25.40463 -24.86611 -22.18469 -21.79989 -20.84408 -19.16646 -18.41363 -17.59518 -16.90517 -16.37495 -16.22672 -15.60671 -15.29533 -14.79268 -14.37921 -14.09199 -13.66391 -13.37648 -13.16499 -12.90078 -12.29470 -12.13991 -11.73749 -11.55792 -11.34382 -11.20630 -11.04892 -10.98437 -10.79751 -10.67191 -10.60619 -10.52751 -10.15772 -9.88361 -9.33245 -8.95902 -8.46368 -7.42415 -6.05741 -4.06256 0.88739 1.95921 2.52416 2.86921 3.06812 3.30886 3.38808 3.43963 4.06424 4.40986 4.62893 4.82788 5.08663 5.30700 5.36144 5.40544 5.51872 5.59140 5.73678 5.80452 5.84412 5.95330 6.10779 6.13392 6.22455 6.27420 6.40071 6.65960 6.72656 7.14260 7.23752 7.56642 7.73346 7.86255 7.99162 8.08491 8.42614 9.00403 9.57748 11.05005 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.005085 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.254500 B = 5504.745752 C = 6176.242113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.077 3.923 3 C -0.184 4.184 4 N -0.519 5.519 5 C 0.194 3.806 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.132 3.868 15 C 0.236 3.764 16 N -0.427 5.427 17 C -0.065 4.065 18 C 0.579 3.421 19 O -0.519 6.519 20 O -0.490 6.490 21 C 0.014 3.986 22 O -0.195 6.195 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.050 0.950 30 H -0.001 1.001 31 H 0.037 0.963 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.413 0.587 36 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 7.047 4.872 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 C -0.242 4.242 4 N -0.244 5.244 5 C 0.070 3.930 6 C -0.542 4.542 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C 0.002 3.998 15 C 0.025 3.975 16 N -0.155 5.155 17 C -0.183 4.183 18 C 0.423 3.577 19 O -0.409 6.409 20 O -0.299 6.299 21 C -0.060 4.060 22 O -0.081 6.081 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.271 0.729 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.674 6.327 4.935 15.000 hybrid contribution -0.314 0.149 -0.593 0.688 sum -12.988 6.476 4.342 15.148 Atomic orbital electron populations 1.22092 0.96329 1.01847 1.00724 1.21689 0.93953 0.92095 0.95403 1.22458 1.02084 0.98448 1.01237 1.62207 1.24261 1.38899 0.99006 1.19840 0.79452 0.95449 0.98251 1.21130 0.93906 1.16862 1.22275 0.91784 1.24949 0.95750 0.97268 0.96497 1.69956 0.99423 1.42348 1.42101 0.86443 0.78067 0.82022 0.80906 1.19679 1.21163 1.20993 1.20701 0.82482 0.99395 0.97187 1.26753 0.94578 0.80142 0.95986 1.71001 1.03676 1.25931 1.14925 1.20566 0.92916 0.93772 1.11080 1.19162 0.84809 0.80160 0.73575 1.90922 1.20717 1.76340 1.52959 1.84732 1.46422 1.24247 1.74531 1.25135 0.89142 0.94652 0.97102 1.84493 1.18197 1.42978 1.62474 0.93188 0.93027 0.92282 0.88496 0.91773 0.92669 0.93097 0.98346 0.94478 0.92938 0.91187 0.87026 0.72891 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.35 37.16 0.31 -2.12 16 2 C 0.08 1.39 2.77 -67.71 -0.19 1.20 16 3 C -0.18 -2.83 8.12 37.16 0.30 -2.53 16 4 N -0.52 -10.47 4.36 -229.52 -1.00 -11.47 16 5 C 0.19 4.69 4.64 -4.98 -0.02 4.67 16 6 C -0.50 -13.61 8.45 -34.44 -0.29 -13.90 16 7 H 0.06 1.75 7.48 -52.49 -0.39 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 10 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.13 2.21 5.35 -4.97 -0.03 2.19 16 15 C 0.24 3.80 5.76 -13.09 -0.08 3.73 16 16 N -0.43 -7.51 11.36 -7.67 -0.09 -7.60 16 17 C -0.07 -0.97 7.04 -83.04 -0.58 -1.56 16 18 C 0.58 8.02 8.33 34.41 0.29 8.31 16 19 O -0.52 -7.51 17.68 -19.29 -0.34 -7.85 16 20 O -0.49 -6.00 13.44 -40.70 -0.55 -6.55 16 21 C 0.01 0.17 11.95 29.99 0.36 0.53 16 22 O -0.19 -2.65 8.61 6.55 0.06 -2.60 16 23 H 0.05 0.75 4.38 -51.93 -0.23 0.52 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.10 1.96 6.95 -51.93 -0.36 1.60 16 27 H 0.06 1.08 6.63 -51.93 -0.34 0.73 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.70 6.43 -51.93 -0.33 0.37 16 30 H 0.00 -0.03 6.56 -51.93 -0.34 -0.37 16 31 H 0.04 0.97 7.67 -51.93 -0.40 0.57 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.04 5.35 -51.92 -0.28 0.76 16 34 H 0.11 1.86 7.62 -51.93 -0.40 1.46 16 35 H 0.41 2.64 9.11 45.56 0.42 3.06 16 36 H 0.23 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -32.31 304.79 -5.12 -37.43 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.48 Total: 0.81 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.03 Total: 1.98 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.35 Total: -44.16 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.83 Total: -16.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.31 -5.12 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386956171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.666 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds