Wall clock time and date at job start Mon Mar 30 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 N 1.46901 * 109.47078 * 120.00150 * 2 1 3 5 5 C 1.46897 * 110.99674 * 163.52784 * 4 2 1 6 6 C 1.50702 * 109.47398 * 288.30900 * 5 4 2 7 7 H 1.07995 * 119.99725 * 4.66921 * 6 5 4 8 8 C 1.37875 * 120.00069 * 184.66842 * 6 5 4 9 9 N 1.31518 * 119.99952 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47059 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46939 * 119.99660 * 10 8 6 13 13 H 1.48502 * 109.47326 * 240.00097 * 10 8 6 14 14 C 1.46901 * 110.99886 * 287.48200 * 4 2 1 15 15 C 1.50700 * 109.47181 * 77.59777 * 14 4 2 16 16 N 1.29915 * 125.36739 * 71.30810 * 15 14 4 17 17 C 1.36108 * 108.47040 * 179.97438 * 16 15 14 18 18 C 1.47281 * 126.45792 * 180.02562 * 17 16 15 19 19 O 1.21535 * 120.00027 * 179.97438 * 18 17 16 20 20 O 1.34778 * 119.99587 * 359.97438 * 18 17 16 21 21 C 1.36171 * 107.08331 * 0.02562 * 17 16 15 22 22 O 1.34065 * 125.36781 * 251.59397 * 15 14 4 23 23 H 1.08998 * 109.47080 * 309.74514 * 1 2 3 24 24 H 1.09002 * 109.47235 * 69.74526 * 1 2 3 25 25 H 1.09001 * 109.47129 * 189.74022 * 1 2 3 26 26 H 1.08999 * 109.46905 * 239.99789 * 2 1 3 27 27 H 1.08994 * 109.47511 * 171.43264 * 3 2 1 28 28 H 1.09005 * 109.46861 * 291.43580 * 3 2 1 29 29 H 1.09000 * 109.46694 * 51.42817 * 3 2 1 30 30 H 1.08991 * 109.47384 * 48.31597 * 5 4 2 31 31 H 1.09007 * 109.46976 * 168.31273 * 5 4 2 32 32 H 0.97003 * 119.99623 * 180.02562 * 9 8 6 33 33 H 1.09007 * 109.47064 * 317.59848 * 14 4 2 34 34 H 1.09001 * 109.47339 * 197.59662 * 14 4 2 35 35 H 0.96701 * 116.99463 * 180.02562 * 20 18 17 36 36 H 1.08002 * 126.52974 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4351 -1.0582 1.0551 6 6 3.5642 -2.1845 0.0622 7 1 2.6934 -2.5377 -0.4700 8 6 4.7942 -2.7641 -0.1667 9 7 5.8545 -2.3343 0.4818 10 14 4.9544 -4.1597 -1.3980 11 1 3.6239 -4.4543 -1.9882 12 1 5.8974 -3.7639 -2.4748 13 1 5.4690 -5.3706 -0.7095 14 6 1.8067 0.1235 2.4023 15 6 0.3601 0.0401 2.8162 16 7 -0.2141 -1.0025 3.3370 17 6 -1.5192 -0.7006 3.5780 18 6 -2.5309 -1.5963 4.1640 19 8 -3.6689 -1.2025 4.3284 20 8 -2.1947 -2.8526 4.5178 21 6 -1.7133 0.5856 3.1751 22 8 -0.5385 1.0282 2.7002 23 1 -0.3633 0.6571 0.7902 24 1 -0.3634 0.3558 -0.9641 25 1 -0.3633 -1.0129 0.1739 26 1 1.8933 -0.5139 -0.8900 27 1 3.1192 1.4463 0.1531 28 1 1.8070 1.9102 -0.9566 29 1 1.5570 1.9985 0.8035 30 1 3.9990 -0.1954 0.7012 31 1 3.8280 -1.3780 2.0203 32 1 6.7199 -2.7418 0.3204 33 1 2.0641 1.1608 2.1878 34 1 2.4377 -0.2480 3.2097 35 1 -2.8927 -3.4032 4.8980 36 1 -2.6374 1.1424 3.2249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386956171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:04 Heat of formation + Delta-G solvation = -80.283835 kcal Electronic energy + Delta-G solvation = -20798.938116 eV Core-core repulsion = 17477.494062 eV Total energy + Delta-G solvation = -3321.444054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.60192 -41.03784 -39.46051 -37.19130 -35.97196 -34.92241 -33.00799 -31.99094 -29.29936 -28.10879 -26.91453 -26.06769 -24.00902 -22.99017 -22.00978 -20.57323 -19.46626 -18.68935 -18.31368 -18.04806 -17.40439 -16.94741 -16.51779 -16.43167 -15.82551 -15.62926 -14.86678 -14.66470 -14.47743 -14.21891 -14.06185 -13.54847 -13.18623 -12.82059 -12.73465 -12.69643 -12.56527 -12.45372 -12.33431 -12.15603 -12.05443 -11.77523 -11.70356 -11.52392 -11.31871 -10.57506 -10.10258 -9.02454 -8.16780 -6.24325 -0.12410 0.77526 1.41482 1.43557 1.45742 1.55936 1.87712 1.98097 2.43315 2.93693 3.15192 3.31021 3.69443 4.02115 4.09090 4.15531 4.34763 4.39249 4.48749 4.53526 4.59844 4.73843 4.79620 4.90500 4.96561 5.06365 5.16168 5.22355 5.37999 5.40095 5.51151 5.69063 6.07845 6.34814 6.48961 6.59572 6.89385 6.93707 7.43899 8.93609 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.005085 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.254500 B = 5504.745752 C = 6176.242113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 C -0.174 4.174 4 N -0.534 5.534 5 C 0.211 3.789 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.281 1.281 14 C 0.134 3.866 15 C 0.227 3.773 16 N -0.460 5.460 17 C -0.101 4.101 18 C 0.583 3.417 19 O -0.529 6.529 20 O -0.499 6.499 21 C 0.051 3.949 22 O -0.188 6.188 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.071 0.929 30 H -0.014 1.014 31 H 0.011 0.989 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.435 0.565 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 8.056 4.462 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.233 4.233 4 N -0.259 5.259 5 C 0.086 3.914 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.207 1.207 14 C 0.005 3.995 15 C 0.016 3.984 16 N -0.189 5.189 17 C -0.218 4.218 18 C 0.428 3.572 19 O -0.420 6.420 20 O -0.312 6.312 21 C -0.023 4.023 22 O -0.073 6.073 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.004 0.996 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.297 0.703 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -14.461 7.333 4.532 16.835 hybrid contribution 0.138 -0.153 -0.411 0.460 sum -14.323 7.180 4.121 16.543 Atomic orbital electron populations 1.21973 0.94362 1.00855 1.02495 1.21706 0.95373 0.93124 0.93261 1.22347 1.00833 0.96877 1.03200 1.62023 1.21483 1.41267 1.01168 1.19423 0.81883 0.94184 0.95939 1.21416 0.93686 1.17640 1.22717 0.92691 1.25742 0.95474 0.99639 0.98248 1.70056 0.99889 1.43682 1.43514 0.85454 0.78113 0.78981 0.78775 1.19341 1.20262 1.20709 1.20609 0.83421 0.99973 0.95467 1.26233 0.94433 0.80689 0.97038 1.70918 1.05434 1.27073 1.15519 1.20896 0.92319 0.95434 1.13156 1.19041 0.84443 0.80412 0.73337 1.90912 1.20836 1.76641 1.53660 1.84689 1.47891 1.24124 1.74486 1.26016 0.89321 0.93666 0.93307 1.84492 1.18403 1.42082 1.62359 0.91850 0.90732 0.94598 0.91474 0.93676 0.90651 0.91008 0.99628 0.97110 0.92737 0.88919 0.87789 0.70285 0.71007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.35 71.98 0.60 -3.61 16 2 C 0.07 2.62 2.77 44.92 0.12 2.75 16 3 C -0.17 -5.09 8.12 71.98 0.58 -4.51 16 4 N -0.53 -21.91 4.36 -880.05 -3.83 -25.75 16 5 C 0.21 10.59 4.64 85.56 0.40 10.99 16 6 C -0.52 -28.68 8.45 25.60 0.22 -28.46 16 7 H 0.05 3.09 7.48 -2.91 -0.02 3.06 16 8 C 0.01 0.40 5.46 84.65 0.46 0.86 16 9 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 10 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.13 4.48 5.35 85.56 0.46 4.94 16 15 C 0.23 7.04 5.76 88.39 0.51 7.55 16 16 N -0.46 -15.90 11.36 -293.08 -3.33 -19.23 16 17 C -0.10 -2.82 7.04 40.38 0.28 -2.54 16 18 C 0.58 15.28 8.33 70.20 0.58 15.87 16 19 O -0.53 -14.21 17.68 19.72 0.35 -13.86 16 20 O -0.50 -11.74 13.44 -56.89 -0.76 -12.50 16 21 C 0.05 1.06 11.95 67.34 0.80 1.86 16 22 O -0.19 -4.56 8.61 0.53 0.00 -4.56 16 23 H 0.06 1.73 4.38 -2.39 -0.01 1.71 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 2.77 6.95 -2.39 -0.02 2.75 16 27 H 0.04 1.49 6.63 -2.39 -0.02 1.48 16 28 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.79 6.43 -2.39 -0.02 1.77 16 30 H -0.01 -0.72 6.56 -2.39 -0.02 -0.74 16 31 H 0.01 0.59 7.67 -2.38 -0.02 0.57 16 32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.09 2.63 5.35 -2.38 -0.01 2.61 16 34 H 0.10 3.58 7.62 -2.39 -0.02 3.56 16 35 H 0.43 5.01 9.11 -74.06 -0.67 4.34 16 36 H 0.27 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -70.71 304.79 0.21 -70.50 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.45 Total: 7.69 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.03 Total: 5.70 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -6.88 Total: -99.25 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.41 Total: -30.92 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.71 0.21 -70.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386956171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.788 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds