Wall clock time and date at job start Mon Mar 30 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86796 * 120.00220 * 2 1 4 4 H 1.48504 * 109.46687 * 239.99802 * 3 2 1 5 5 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47265 * 120.00332 * 3 2 1 7 7 C 1.39584 * 119.99369 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36119 * 120.00603 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00294 * 179.97438 * 9 7 2 11 11 O 1.21499 * 120.00233 * 359.97438 * 10 9 7 12 12 C 1.48841 * 119.99926 * 180.02562 * 10 9 7 13 13 O 1.21435 * 119.99691 * 359.97438 * 12 10 9 14 14 N 1.34770 * 119.99926 * 180.02562 * 12 10 9 15 15 C 1.46494 * 120.00139 * 179.97438 * 14 12 10 16 16 H 1.08995 * 115.55486 * 350.70203 * 15 14 12 17 17 C 1.53055 * 117.53639 * 136.45284 * 15 14 12 18 18 C 1.52709 * 59.93185 * 107.45618 * 17 15 14 19 19 C 1.53243 * 117.86009 * 252.19208 * 18 17 15 20 20 C 1.53332 * 108.65737 * 163.75334 * 19 18 17 21 21 O 1.43317 * 109.07272 * 53.89541 * 20 19 18 22 22 C 1.42878 * 114.59916 * 295.68649 * 21 20 19 23 23 C 1.53256 * 117.85259 * 107.80481 * 18 17 15 24 24 H 0.97002 * 119.99533 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99689 * 359.97438 * 9 7 2 26 26 H 0.97005 * 120.00017 * 359.97438 * 14 12 10 27 27 H 1.09000 * 117.50711 * 359.97438 * 17 15 14 28 28 H 1.08998 * 117.50792 * 214.92901 * 17 15 14 29 29 H 1.09002 * 109.63413 * 283.55506 * 19 18 17 30 30 H 1.08999 * 109.63162 * 43.95458 * 19 18 17 31 31 H 1.09004 * 109.49714 * 174.02882 * 20 19 18 32 32 H 1.09003 * 109.49957 * 294.12749 * 20 19 18 33 33 H 1.09001 * 109.49802 * 304.48408 * 22 21 20 34 34 H 1.09004 * 109.49478 * 184.38629 * 22 21 20 35 35 H 1.08992 * 109.63472 * 315.85019 * 23 18 17 36 36 H 1.09001 * 109.63083 * 76.25244 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6962 -1.2125 5 1 1.2793 2.7464 -0.0006 6 1 3.0981 1.6963 1.2124 7 6 2.0080 -1.2089 0.0005 8 1 3.0881 -1.2090 0.0001 9 7 1.3274 -2.3877 0.0005 10 6 2.0012 -3.5549 0.0005 11 8 3.2162 -3.5550 0.0001 12 6 1.2569 -4.8439 0.0000 13 8 0.0425 -4.8437 0.0000 14 7 1.9307 -6.0110 0.0005 15 6 1.1982 -7.2797 0.0005 16 1 0.1226 -7.2016 0.1589 17 6 1.6966 -8.3845 -0.9341 18 6 1.9084 -8.5043 0.5735 19 6 3.3305 -8.3195 1.1138 20 6 3.2529 -8.0743 2.6254 21 8 2.5060 -9.1352 3.2342 22 6 1.1366 -9.2051 2.8325 23 6 1.0631 -9.5304 1.3360 24 1 -0.4849 0.8401 -0.0004 25 1 0.3573 -2.3877 0.0005 26 1 2.9007 -6.0111 0.0009 27 1 2.5696 -8.1675 -1.5496 28 1 0.9489 -9.0331 -1.3905 29 1 3.9163 -9.2176 0.9180 30 1 3.7986 -7.4637 0.6275 31 1 4.2600 -8.0464 3.0416 32 1 2.7540 -7.1238 2.8147 33 1 0.6529 -8.2466 3.0207 34 1 0.6306 -9.9862 3.3999 35 1 0.0280 -9.4747 0.9995 36 1 1.4533 -10.5322 1.1564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387279081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:40 Heat of formation + Delta-G solvation = -98.250995 kcal Electronic energy + Delta-G solvation = -20473.174057 eV Core-core repulsion = 17150.950889 eV Total energy + Delta-G solvation = -3322.223168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30594 -39.13168 -37.41822 -36.60387 -34.40223 -32.85097 -31.45333 -31.29916 -29.82947 -26.03920 -23.97552 -23.77710 -22.89518 -21.46493 -19.61916 -19.02901 -18.36326 -17.06336 -16.33306 -16.07818 -16.01896 -15.22527 -14.99321 -14.72939 -14.56871 -14.20056 -13.85076 -13.53650 -13.19966 -12.88606 -12.70570 -12.61642 -12.07657 -11.80511 -11.50665 -11.41802 -11.20308 -10.82251 -10.62174 -10.56307 -10.48044 -10.45216 -10.39070 -9.75180 -9.37649 -8.51697 -8.33857 -8.27444 -6.71722 -4.03943 2.33259 3.10693 3.13846 3.14885 3.26281 3.65564 3.75719 4.01530 4.23659 4.49939 4.58811 4.70197 4.73943 4.88343 4.93211 5.11379 5.14980 5.35437 5.39335 5.47756 5.51812 5.58207 5.66120 5.75443 5.86284 5.90325 6.01751 6.03761 6.08632 6.72861 7.09518 7.26394 7.61552 7.80146 8.26610 8.54943 8.90706 9.26072 9.79478 10.42872 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.004011 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.018449 B = 6978.560106 C = 7161.131136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.032 3.968 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.496 5.496 10 C 0.392 3.608 11 O -0.599 6.599 12 C 0.517 3.483 13 O -0.544 6.544 14 N -0.687 5.687 15 C 0.096 3.904 16 H 0.137 0.863 17 C -0.182 4.182 18 C -0.139 4.139 19 C -0.117 4.117 20 C 0.063 3.937 21 O -0.386 6.386 22 C 0.062 3.938 23 C -0.113 4.113 24 H 0.282 0.718 25 H 0.405 0.595 26 H 0.410 0.590 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -15.611 1.994 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.130 5.130 10 C 0.176 3.824 11 O -0.488 6.488 12 C 0.302 3.698 13 O -0.421 6.421 14 N -0.339 5.339 15 C -0.010 4.010 16 H 0.155 0.845 17 C -0.220 4.220 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.014 4.014 21 O -0.305 6.305 22 C -0.015 4.015 23 C -0.151 4.151 24 H 0.092 0.908 25 H 0.240 0.760 26 H 0.247 0.753 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.770 -15.534 2.128 15.778 hybrid contribution 0.100 0.918 -0.382 0.999 sum 1.871 -14.615 1.745 14.838 Atomic orbital electron populations 1.69480 1.06549 1.29574 1.44881 1.25604 0.95637 1.00528 0.95754 0.85762 0.78883 0.79211 0.79557 1.19335 1.20540 1.19320 1.19853 0.93995 0.81848 1.48013 0.86955 1.41559 1.10518 1.04215 1.56682 1.18868 0.87792 0.84099 0.91620 1.90579 1.12820 1.86544 1.58824 1.20741 0.87529 0.85745 0.75736 1.90679 1.14081 1.87995 1.49309 1.45137 1.10620 1.03595 1.74568 1.21713 0.97115 0.79600 1.02615 0.84547 1.23557 1.04008 1.02386 0.92079 1.21943 0.97085 0.99402 0.95657 1.21730 0.94272 1.02693 0.96759 1.22676 0.96674 0.90228 0.91777 1.87906 1.22259 1.52753 1.67566 1.22588 0.83248 1.01572 0.94048 1.21774 0.99528 0.98175 0.95617 0.90779 0.75966 0.75280 0.88253 0.87946 0.90458 0.90634 0.88611 0.92586 0.92863 0.88901 0.90549 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.98 13.03 55.53 0.72 -22.25 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 3 Si 0.94 19.83 29.56 -169.99 -5.02 14.81 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.31 -8.36 9.67 -15.15 -0.15 -8.50 16 8 H 0.11 3.12 7.15 -52.48 -0.38 2.74 16 9 N -0.50 -13.14 5.25 -11.59 -0.06 -13.21 16 10 C 0.39 9.77 7.82 -11.87 -0.09 9.68 16 11 O -0.60 -15.82 16.03 5.37 0.09 -15.73 16 12 C 0.52 11.12 7.87 -11.87 -0.09 11.02 16 13 O -0.54 -12.57 16.03 5.42 0.09 -12.48 16 14 N -0.69 -11.64 5.34 -54.55 -0.29 -11.93 16 15 C 0.10 1.33 6.10 -68.05 -0.42 0.92 16 16 H 0.14 2.01 7.40 -51.93 -0.38 1.63 16 17 C -0.18 -1.99 9.93 -26.85 -0.27 -2.26 16 18 C -0.14 -1.55 2.03 -154.54 -0.31 -1.86 16 19 C -0.12 -1.27 5.71 -26.43 -0.15 -1.42 16 20 C 0.06 0.73 6.89 37.33 0.26 0.99 16 21 O -0.39 -4.77 10.70 -35.23 -0.38 -5.15 16 22 C 0.06 0.65 6.85 37.33 0.26 0.90 16 23 C -0.11 -1.09 5.92 -26.43 -0.16 -1.24 16 24 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 25 H 0.40 10.81 7.35 -40.82 -0.30 10.51 16 26 H 0.41 6.61 6.30 -40.82 -0.26 6.36 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.84 6.17 -51.93 -0.32 0.52 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.65 8.08 -51.93 -0.42 0.24 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -30.30 307.43 -6.02 -36.32 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.57 Total: 16.04 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -1.22 Total: 8.95 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.37 Total: -47.39 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.20 Total: -33.36 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.30 -6.02 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387279081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.932 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds