Wall clock time and date at job start Mon Mar 30 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86796 * 120.00220 * 2 1 4 4 H 1.48504 * 109.46687 * 239.99802 * 3 2 1 5 5 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47265 * 120.00332 * 3 2 1 7 7 C 1.39584 * 119.99369 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36119 * 120.00603 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00294 * 179.97438 * 9 7 2 11 11 O 1.21499 * 120.00233 * 359.97438 * 10 9 7 12 12 C 1.48841 * 119.99926 * 180.02562 * 10 9 7 13 13 O 1.21435 * 119.99691 * 359.97438 * 12 10 9 14 14 N 1.34770 * 119.99926 * 180.02562 * 12 10 9 15 15 C 1.46494 * 120.00139 * 179.97438 * 14 12 10 16 16 H 1.08995 * 115.55486 * 350.70203 * 15 14 12 17 17 C 1.53055 * 117.53639 * 136.45284 * 15 14 12 18 18 C 1.52709 * 59.93185 * 107.45618 * 17 15 14 19 19 C 1.53243 * 117.86009 * 252.19208 * 18 17 15 20 20 C 1.53332 * 108.65737 * 163.75334 * 19 18 17 21 21 O 1.43317 * 109.07272 * 53.89541 * 20 19 18 22 22 C 1.42878 * 114.59916 * 295.68649 * 21 20 19 23 23 C 1.53256 * 117.85259 * 107.80481 * 18 17 15 24 24 H 0.97002 * 119.99533 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99689 * 359.97438 * 9 7 2 26 26 H 0.97005 * 120.00017 * 359.97438 * 14 12 10 27 27 H 1.09000 * 117.50711 * 359.97438 * 17 15 14 28 28 H 1.08998 * 117.50792 * 214.92901 * 17 15 14 29 29 H 1.09002 * 109.63413 * 283.55506 * 19 18 17 30 30 H 1.08999 * 109.63162 * 43.95458 * 19 18 17 31 31 H 1.09004 * 109.49714 * 174.02882 * 20 19 18 32 32 H 1.09003 * 109.49957 * 294.12749 * 20 19 18 33 33 H 1.09001 * 109.49802 * 304.48408 * 22 21 20 34 34 H 1.09004 * 109.49478 * 184.38629 * 22 21 20 35 35 H 1.08992 * 109.63472 * 315.85019 * 23 18 17 36 36 H 1.09001 * 109.63083 * 76.25244 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.0980 1.6962 -1.2125 5 1 1.2793 2.7464 -0.0006 6 1 3.0981 1.6963 1.2124 7 6 2.0080 -1.2089 0.0005 8 1 3.0881 -1.2090 0.0001 9 7 1.3274 -2.3877 0.0005 10 6 2.0012 -3.5549 0.0005 11 8 3.2162 -3.5550 0.0001 12 6 1.2569 -4.8439 0.0000 13 8 0.0425 -4.8437 0.0000 14 7 1.9307 -6.0110 0.0005 15 6 1.1982 -7.2797 0.0005 16 1 0.1226 -7.2016 0.1589 17 6 1.6966 -8.3845 -0.9341 18 6 1.9084 -8.5043 0.5735 19 6 3.3305 -8.3195 1.1138 20 6 3.2529 -8.0743 2.6254 21 8 2.5060 -9.1352 3.2342 22 6 1.1366 -9.2051 2.8325 23 6 1.0631 -9.5304 1.3360 24 1 -0.4849 0.8401 -0.0004 25 1 0.3573 -2.3877 0.0005 26 1 2.9007 -6.0111 0.0009 27 1 2.5696 -8.1675 -1.5496 28 1 0.9489 -9.0331 -1.3905 29 1 3.9163 -9.2176 0.9180 30 1 3.7986 -7.4637 0.6275 31 1 4.2600 -8.0464 3.0416 32 1 2.7540 -7.1238 2.8147 33 1 0.6529 -8.2466 3.0207 34 1 0.6306 -9.9862 3.3999 35 1 0.0280 -9.4747 0.9995 36 1 1.4533 -10.5322 1.1564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387279081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:39 Heat of formation + Delta-G solvation = -120.821883 kcal Electronic energy + Delta-G solvation = -20474.152805 eV Core-core repulsion = 17150.950889 eV Total energy + Delta-G solvation = -3323.201915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61437 -40.58841 -39.10758 -37.85257 -36.37683 -34.31881 -33.41882 -32.19511 -30.79690 -27.97759 -25.47657 -24.77096 -23.87951 -22.71919 -21.29847 -20.46747 -20.00607 -18.68625 -17.84929 -17.21900 -17.00858 -16.83188 -16.53348 -16.20645 -15.87076 -15.75366 -15.06655 -14.84819 -14.72144 -14.28946 -14.03762 -13.68559 -13.52364 -13.00916 -12.97606 -12.61455 -12.55493 -12.39388 -12.25416 -12.12573 -11.69259 -11.67489 -11.57019 -11.37006 -10.37024 -10.30237 -10.21063 -9.78585 -8.68102 -6.13176 0.53167 1.40130 1.48102 1.52794 1.71664 2.26973 2.28616 2.74829 2.89818 3.13758 3.18096 3.56286 3.62464 3.77487 3.84285 3.97155 4.04783 4.23942 4.46288 4.47620 4.64669 4.69542 4.74842 4.76838 4.86254 4.97823 5.06805 5.19033 5.21392 5.22992 5.35509 5.65262 6.11162 6.21486 6.34019 6.77450 6.96968 7.24365 7.76365 8.47401 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.004011 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.018449 B = 6978.560106 C = 7161.131136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.003 4.003 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.508 5.508 10 C 0.388 3.612 11 O -0.617 6.617 12 C 0.522 3.478 13 O -0.565 6.565 14 N -0.666 5.666 15 C 0.058 3.942 16 H 0.126 0.874 17 C -0.158 4.158 18 C -0.124 4.124 19 C -0.117 4.117 20 C 0.061 3.939 21 O -0.398 6.398 22 C 0.056 3.944 23 C -0.110 4.110 24 H 0.290 0.710 25 H 0.401 0.599 26 H 0.414 0.586 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -16.954 1.696 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.118 0.882 9 N -0.142 5.142 10 C 0.173 3.827 11 O -0.507 6.507 12 C 0.306 3.694 13 O -0.444 6.444 14 N -0.317 5.317 15 C -0.047 4.047 16 H 0.144 0.856 17 C -0.196 4.196 18 C -0.125 4.125 19 C -0.155 4.155 20 C -0.016 4.016 21 O -0.317 6.317 22 C -0.021 4.021 23 C -0.147 4.147 24 H 0.100 0.900 25 H 0.235 0.765 26 H 0.253 0.747 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.289 -16.928 1.828 17.180 hybrid contribution -0.052 1.184 -0.265 1.214 sum 2.237 -15.744 1.564 15.979 Atomic orbital electron populations 1.69548 1.07862 1.30969 1.44813 1.26555 0.96493 1.03496 0.94226 0.84743 0.77756 0.74699 0.79678 1.18804 1.19071 1.18821 1.19969 0.93748 0.83024 1.50884 0.88221 1.41652 1.10257 1.04794 1.57474 1.19531 0.87856 0.85135 0.90214 1.90542 1.13716 1.87225 1.59214 1.20081 0.87038 0.85811 0.76482 1.90667 1.14572 1.88202 1.50937 1.45025 1.10835 1.03576 1.72277 1.21966 0.96708 0.78924 1.07132 0.85630 1.23664 1.04241 0.99716 0.91982 1.22049 0.96951 0.97263 0.96275 1.21760 0.94347 1.03335 0.96012 1.22712 0.97116 0.89203 0.92549 1.87892 1.23105 1.52660 1.68045 1.22760 0.82462 1.01621 0.95232 1.21818 1.00113 0.98282 0.94500 0.90015 0.76465 0.74750 0.87689 0.85614 0.88604 0.91144 0.87258 0.94819 0.94445 0.86697 0.89275 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.88 13.03 21.77 0.28 -47.59 16 2 C 0.00 -0.16 5.51 85.14 0.47 0.31 16 3 Si 1.01 40.42 29.56 68.60 2.03 42.45 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.35 -19.43 9.67 84.35 0.82 -18.62 16 8 H 0.10 5.71 7.15 -2.91 -0.02 5.69 16 9 N -0.51 -27.92 5.25 -308.87 -1.62 -29.54 16 10 C 0.39 19.91 7.82 87.08 0.68 20.59 16 11 O -0.62 -33.36 16.03 -3.71 -0.06 -33.42 16 12 C 0.52 22.90 7.87 87.08 0.69 23.58 16 13 O -0.56 -26.68 16.03 -3.51 -0.06 -26.74 16 14 N -0.67 -22.49 5.34 -444.82 -2.37 -24.87 16 15 C 0.06 1.54 6.10 44.92 0.27 1.81 16 16 H 0.13 3.65 7.40 -2.39 -0.02 3.63 16 17 C -0.16 -3.00 9.93 30.52 0.30 -2.69 16 18 C -0.12 -2.47 2.03 -52.20 -0.11 -2.57 16 19 C -0.12 -2.31 5.71 30.79 0.18 -2.14 16 20 C 0.06 1.35 6.89 72.09 0.50 1.85 16 21 O -0.40 -9.21 10.70 -148.98 -1.59 -10.80 16 22 C 0.06 1.06 6.85 72.09 0.49 1.56 16 23 C -0.11 -1.79 5.92 30.79 0.18 -1.60 16 24 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 25 H 0.40 22.27 7.35 -92.70 -0.68 21.59 16 26 H 0.41 13.25 6.30 -92.70 -0.58 12.67 16 27 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.47 6.17 -2.39 -0.01 1.45 16 31 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.12 307.43 0.93 -65.19 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: -0.14 Total: 43.26 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 4.47 Total: 22.07 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.71 Total: -102.00 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -1.71 Total: -70.96 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -66.12 0.93 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387279081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.632 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds