Wall clock time and date at job start Mon Mar 30 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00394 * 2 1 4 4 H 1.48503 * 109.47288 * 240.00265 * 3 2 1 5 5 H 1.48503 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47176 * 120.00144 * 3 2 1 7 7 C 1.37878 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00029 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00157 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47388 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46941 * 65.00151 * 12 11 10 14 14 C 1.50368 * 110.99780 * 170.00109 * 13 12 11 15 15 C 1.47227 * 102.18191 * 144.72803 * 14 13 12 16 16 H 1.09002 * 102.30356 * 62.90053 * 15 14 13 17 17 C 1.44121 * 140.82599 * 190.68554 * 15 14 13 18 18 O 1.21227 * 127.56918 * 339.74737 * 17 15 14 19 19 N 1.35950 * 105.55957 * 160.11585 * 17 15 14 20 20 C 1.36613 * 112.54241 * 346.67501 * 19 17 15 21 21 O 1.21233 * 127.08820 * 164.06318 * 20 19 17 22 22 C 1.50365 * 105.82424 * 344.09950 * 20 19 17 23 23 H 1.09003 * 113.54851 * 274.83435 * 22 20 19 24 24 C 1.49341 * 111.00078 * 289.89363 * 13 12 11 25 25 H 0.97001 * 120.00386 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47368 * 60.00464 * 9 7 2 27 27 H 1.09001 * 109.46935 * 299.99515 * 9 7 2 28 28 H 1.09005 * 109.47008 * 59.99591 * 11 10 9 29 29 H 1.09003 * 109.46888 * 300.00422 * 11 10 9 30 30 H 1.09001 * 109.47225 * 304.99807 * 12 11 10 31 31 H 1.08998 * 109.46771 * 184.99861 * 12 11 10 32 32 H 1.09002 * 110.86169 * 26.55278 * 14 13 12 33 33 H 1.09002 * 111.03405 * 262.97520 * 14 13 12 34 34 H 0.96996 * 123.82180 * 166.83852 * 19 17 15 35 35 H 1.09005 * 110.23754 * 5.73383 * 24 13 12 36 36 H 1.08998 * 110.24126 * 127.63420 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8755 0.0000 12 6 2.6478 -5.9563 -0.0006 13 7 3.4087 -5.8877 1.2540 14 6 4.3166 -7.0776 1.3992 15 6 5.4894 -6.4934 2.0707 16 1 5.0710 -6.1594 3.0201 17 6 6.8471 -6.8167 2.4303 18 8 7.3428 -7.9184 2.5309 19 7 7.4619 -5.6230 2.6437 20 6 6.7294 -4.5666 2.1812 21 8 6.8794 -3.3959 2.4583 22 6 5.6984 -5.1552 1.2584 23 1 6.0586 -5.3023 0.2402 24 6 4.2556 -4.6585 1.2999 25 1 -0.4851 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 0.9444 -4.9828 -0.8897 29 1 0.9450 -4.9822 0.8903 30 1 3.3207 -5.7958 -0.8430 31 1 2.1817 -6.9375 -0.0897 32 1 4.5884 -7.4799 0.4233 33 1 3.8571 -7.8468 2.0200 34 1 8.3261 -5.5302 3.0742 35 1 4.0496 -4.0262 0.4362 36 1 4.0714 -4.1079 2.2223 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388087747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:13 Heat of formation + Delta-G solvation = -64.553297 kcal Electronic energy + Delta-G solvation = -20673.808673 eV Core-core repulsion = 17353.046747 eV Total energy + Delta-G solvation = -3320.761926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64847 -38.80773 -38.62314 -36.70640 -35.65331 -32.93941 -32.10433 -29.57019 -28.52231 -26.80356 -25.00272 -23.57135 -22.30249 -21.62925 -20.69528 -19.36950 -18.11125 -17.86535 -16.43453 -16.16086 -16.03042 -15.72052 -15.33260 -14.92150 -14.83689 -14.45684 -14.12457 -13.77091 -13.33158 -13.12535 -12.86727 -12.38521 -12.09651 -11.79756 -11.44217 -11.28094 -11.10895 -10.82116 -10.75840 -10.62080 -10.46310 -10.41030 -10.28972 -9.93324 -9.10758 -8.84235 -8.42843 -8.18903 -6.11063 -4.12907 1.24829 2.22252 2.41616 3.13635 3.33165 3.36036 3.40174 3.67227 3.88700 4.33996 4.46590 4.55251 4.72610 4.85872 5.03155 5.18144 5.25924 5.34898 5.42207 5.53334 5.60560 5.80938 5.93999 5.97854 6.06616 6.16312 6.28182 6.46917 6.75222 6.96512 7.00464 7.13203 7.42802 7.57406 7.78129 8.14335 8.53885 8.99588 9.52252 11.00304 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004918 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.018238 B = 5692.025854 C = 6809.978122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.395 6.395 11 C 0.064 3.936 12 C 0.052 3.948 13 N -0.515 5.515 14 C 0.083 3.917 15 C -0.183 4.183 16 H 0.114 0.886 17 C 0.580 3.420 18 O -0.479 6.479 19 N -0.706 5.706 20 C 0.549 3.451 21 O -0.452 6.452 22 C -0.154 4.154 23 H 0.135 0.865 24 C 0.057 3.943 25 H 0.264 0.736 26 H 0.004 0.996 27 H 0.006 0.994 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.415 0.585 35 H 0.118 0.882 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 -14.618 2.377 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.316 6.316 11 C -0.014 4.014 12 C -0.076 4.076 13 N -0.240 5.240 14 C -0.044 4.044 15 C -0.205 4.205 16 H 0.132 0.868 17 C 0.369 3.631 18 O -0.350 6.350 19 N -0.376 5.376 20 C 0.336 3.664 21 O -0.319 6.319 22 C -0.177 4.177 23 H 0.152 0.848 24 C -0.070 4.070 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.255 0.745 35 H 0.136 0.864 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.815 -14.370 2.938 17.648 hybrid contribution 1.082 0.949 -0.318 1.474 sum 10.897 -13.421 2.620 17.485 Atomic orbital electron populations 1.69945 1.06106 1.27261 1.50446 1.24920 0.94926 0.99377 0.95112 0.86438 0.79352 0.82052 0.78910 1.20052 1.21202 1.19934 1.21001 0.93941 0.89369 1.50991 0.91632 1.20180 0.88715 0.83456 0.95374 1.87755 1.35385 1.13159 1.95260 1.22246 0.94207 0.85252 0.99715 1.22382 0.96291 0.98840 0.90078 1.65326 1.22793 1.00408 1.35471 1.21337 0.88906 0.94269 0.99933 1.21024 0.95300 0.99908 1.04244 0.86842 1.18280 0.87160 0.82982 0.74716 1.90798 1.72856 1.23009 1.48318 1.46011 1.23935 1.08521 1.59119 1.20794 0.81530 0.84379 0.79742 1.90848 1.67602 1.15613 1.57800 1.23904 0.98616 0.95377 0.99788 0.84762 1.22891 0.84462 0.92559 1.07088 0.92616 0.97846 0.97633 0.93913 0.93388 0.93632 0.89811 0.92129 0.88488 0.74520 0.86435 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.28 55.43 0.74 -25.81 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.66 9.43 -34.44 -0.32 -14.99 16 8 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.20 5.15 5.69 36.01 0.20 5.35 16 10 O -0.40 -8.55 7.23 -35.23 -0.25 -8.81 16 11 C 0.06 1.06 6.24 37.15 0.23 1.29 16 12 C 0.05 0.66 5.24 -3.83 -0.02 0.64 16 13 N -0.52 -6.49 5.25 -233.05 -1.22 -7.71 16 14 C 0.08 0.78 6.44 -4.65 -0.03 0.75 16 15 C -0.18 -1.80 3.13 -94.81 -0.30 -2.09 16 16 H 0.11 1.16 7.23 -51.93 -0.38 0.78 16 17 C 0.58 5.94 8.14 -13.42 -0.11 5.84 16 18 O -0.48 -6.14 18.02 5.60 0.10 -6.04 16 19 N -0.71 -6.59 5.81 -12.80 -0.07 -6.66 16 20 C 0.55 6.54 8.07 -10.31 -0.08 6.46 16 21 O -0.45 -7.13 18.02 5.60 0.10 -7.03 16 22 C -0.15 -1.71 3.83 -89.41 -0.34 -2.05 16 23 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 24 C 0.06 0.81 5.50 -2.65 -0.01 0.79 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.56 8.06 -51.93 -0.42 0.15 16 31 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.06 0.51 7.86 -51.93 -0.41 0.10 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.42 3.03 8.96 -40.82 -0.37 2.67 16 35 H 0.12 2.00 5.38 -51.93 -0.28 1.73 16 36 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -32.41 304.30 -6.70 -39.11 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.77 Total: -1.89 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.88 Total: 3.55 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.56 Total: -40.19 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.41 -6.70 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388087747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.440 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds